cluster # 12164

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Oryza sativa
cluster # 12164 cluster # 12164 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12164#0 length = 2695 sequences # 9

consensus_12164#1 length = 106 sequences # 1

consensusID : consensus_12164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2695
fasta sequence

                              [AGAGGGAGGGAGAGGAGTCGGAGGCAGCGGCGCGGGCGAGGCGAGGTGAGAGCGAGCGATAGAAATACGAGAGCGGGAGGAGAGGCGAGGAGAGAGAGACACAGATAAGCTCAGCCCTAACCCTAGCTCCCCGCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCACCGCTCCCCGGGGAGCGGGACGTCGCCGCCGCGGCGCCTAGGTGTGGTTGACTCAGCATATTTGTTCCGTCTGCCAGCCGCCGCCCCTAGGGATCGATGGCTGTTGTCGATCCTGTTATGTTTGACAACGACGACGAGGAAGGTCCGATCTCCTTCAAGAGGTCGAGCACCTCTGTGAAGAACAGGCCCACCCCCACAAAGCAGGAGGGCTCATCAGGGAATGCCGGACCTATTAGG-AGCCCT-AAGGCTG-TTGCTTCCAATC-AAC-AGAA-GAAT-GGGC-TGACT--GGTG-TTTCGA-GGCCTTTGC-AAC-AGAGGCCG-CAGTC-AAGC-AG-TCCAAACCCTCG-ACCTTTGGGATCAGGTCAGCCGAACAGTTCCAAAGAACATAGTAGCCATAATAGTAACTCAGTGGATAAGAGTAAATTGAAAAGACCTTTCGTGGAAGATAAGTCGGATGACTCAGAAGATGACCATAAGCCAATCGGATTAAGGAGAAAGGTCGAGGATAGAAATTTGAAGAAACCTGCTGTAGGAAGTGGGACAGCAAATGATTCAGATGATGATAAACCATTGAGTCTCAAGATAAACTCAACAAAAACGCCTTCGAGTAGTGCAAATAAGGCTATTGTACTGAAAACTACACCTAAAATTGAGCAACCTGGTGATGATTCAGAGGACGATAAACCACTGGCCAGCAGGTTG-CCAACTAATGCTGCTCTGAAAAGGGGAGGTAATGTTTCTGATGATTCAGAGGATGAGAAGCCATTGGCTGCCCGATTTTCGAAAGTTACTGGCAATGCATCTGCAAGTATCTCAAGTTCAAAGGACAAGGTCCTGTCTGCAAGTATAAAAGCAAGTTCTTCCAGCAAGATGTCTAACAATGACGCGAGCACATCACGAAATTCAATTAAAAGGCCAATTGACAATAATAATCAAACAAGTTCAGCTCTCAAGAAGGCGAGGCCTTCAGATGTTTCTGCGTCTGCAAGTGTCAAAAGAGAACCCAAGGCGGATGACAATGACAATGTACCTCTTTCACAAAGACTGAAAATGGGTGAGTCTTCAAAAAGCAAGCCACCTGCAAAGAATATCGTAAAGAAGAGTCCTTCATCTTTAAAGAAGGACAACAAGAAAATGAAAATGAAAATGAAAACAAAGAAAACAATGAAAAATTCTCAGTTCTCAAAGACAATGAAGGTCCCTCCTGGATCTGGTGGTGGACAGAAATGGACTACCTTGGTGCACAGTGGTGTTATTTTCCCCCCTCCATACAAGCCTCATGGTGTCAAGATGCTTTACAACGGGCAACCTGTTGATCTGACGCCAGAACAAGAAGAGGTTGCCACCATGTTTGCTGTGATGAAAGACACTGATTATGCATCCAAGCAAACATTCATTGACAACTTCTTCACTGATTGGAGAAAAATTCTTGGTAAAAACCATGTCATCAAGAAATTTGAGCTTTGTGATTTCACCCCGATCTATGAATGGCACCTAAGAGAGAAGGAGAAGAAGAAGCAGATGACATCTGAGGAGAAGAAAGCATTGAAGGAAGAGAAATTGAAACAAGAGGAGAAGTACATGTGGGCTATTGTAGATGGTGTTAAAGAGAAGGTTGGCAATTTCAGAGTAGAACCACCTGGCTTGTTCAGGGGGCGCGGAGAGCATCCGAAGATGGGAAAACTGAAGCGCCGCATTAAACCAAGCGATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAAGTTGGAAAGAAGTCAAACACGACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAATAAGCCAAAAAGATTTCAAGTATGTTTTCTTGGCAGCAAGCAGTGCATTAAAGGGCCAAAGTGACAAAGAGAAGTATGAGAAGTCTCGAAAATTGAAGCATCACGTACACAAAATTCGTGACACTTACACAAAGGATTTCA-GAAGCAAAGATAAGACAAAGAAACAAATTGCAGTGGCAACATACCTTATAGATAAGTTAGCCCTTAGGGCAGGCAATGAGAAGGATGAAGATGAGGCTGAAACTGTTGGTTGCTGTACACTGAAGGTTGATAATGTTACTTGTGTTCCTCCAAATAAACTGCAGTTCGACTTCCTTGGTAAAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAACTGCTTGTATACAAGGCAATTGAGGAATTCCGTGCTGGCAAGAAACCAGGACAAGATCTCTTTGACAAACTCGATACAACCAGGCTAAATGCTCATCTAAAGGACTTGATGCCTGGGCTTACCGCAAAAGTGTTCCGTACATATAATGCTTCAATCACCTTGGATGATATTTTGCACAAAGAAACAGAAGATGGAACTCTTCTTGAAAAAATTGCGGTTTATCAACGAGCCAACAAAGAGGTTGCTATAATCTGTAACCATCAGCGTAGTGTCTCAAAATCACATGATTCCCAGATGACTAGATTGAATGAGAAGATTGATGAATTGAAGGCCCAAAGGGATGAATTGAAGGCAGA]

[+] EMBL AK070325             [AGAGGGAGGGAGAGGAGTCGGAGGCAGCGGCGCGGGCGAGGCGAGGTGAGAGCGAGCGATAGAAATACGAGAGCGGGAGGAGAGGCGAGGAGAGAGAGACACAGATAAGCTCAGCCCTAACCCTAGCTCCCCGCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCACCGCTCCCCGGGGAGCGGGACGTCGCCGCCGCGGCGCCTAGGTGTGGTTGACTCAGCATATTTGTTCCGTCTGCCAGCCGCCGCCCCTAGGGATCGATGGCTGTTGTCGATCCTGTTATGTTTGACAACGACGACGAGGAAGGTCCGATCTCCTTCAAGAGGTCGAGCACCTCTGTGAAGAACAGGCCCACCCCCACAAAGCAGGAGGGCTCATCAGGGAATGCCGGACCTATTAGG AGCCCT AAGGCTG TTGCTTCCAATC AAC AGAA GAAT GGGC TGACT  GGTG TTTCGA GGCCTTTGC AAC AGAGGCCG CAGTC AAGC AG TCCAAACCCTCG ACCTTTGGGATCAGGTCAGCCGAACAGTTCCAAAGAACATAGTAGCCATAATAGTAACTCAGTGGATAAGAGTAAATTGAAAAGACCTTTCGTGGAAGATAAGTCGGATGACTCAGAAGATGACCATAAGCCAATCGGATTAAGGAGAAAGGTCGAGGATAGAAATTTGAAGAAACCTGCTGTAGGAAGTGGGACAGCAAATGATTCAGATGATGATAAACCATTGAGTCTCAAGATAAACTCAACAAAAACGCCTTCGAGTAGTGCAAATAAGGCTATTGTACTGAAAACTACACCTAAAATTGAGCAACCTGGTGATGATTCAGAGGACGATAAACCACTGGCCAGCAGGTTG CCAACTAATGCTGCTCTGAAAAGGGGAGGTAATGTTTCTGATGATTCAGAGGATGAGAAGCCATTGGCTGCCCGATTTTCGAAAGTTACTGGCAATGCATCTGCAAGTATCTCAAGTTCAAAGGACAAGGTCCTGTCTGCAAGTATAAAAGCAAGTTCTTCCAGCAAGATGTCTAACAATGACGCGAGCACATCACGAAATTCAATTAAAAGGCCAATTGACAATAATAATCAAACAAGTTCAGCTCTCAAGAAGGCGAGGCCTTCAGATGTTTCTGCGTCTGCAAGTGTCAAAAGAGAACCCAAGGCGGATGACAATGACAATGTACCTCTTTCACAAAGACTGAAAATGGGTGAGTCTTCAAAAAGCAAGCCACCTGCAAAGAATATCGTAAAGAAGAGTCCTTCATCTTTAAAGAAGGACAACAAGAAAATGAAAATGAAAATGAAAACAAAGAAAACAATGAAAAATTCTCAGTTCTCAAAGACAATGAAGGTCCCTCCTGGATCTGGTGGTGGACAGAAATGGACTACCTTGGTGCACAGTGGTGTTATTTTCCCCCCTCCATACAAGCCTCATGGTGTCAAGATGCTTTACAACGGGCAACCTGTTGATCTGACGCCAGAACAAGAAGAGGTTGCCACCATGTTTGCTGTGATGAAAGACACTGATTATGCATCCAAGCAAACATTCATTGACAACTTCTTCACTGATTGGAGAAAAATTCTTGGTAAAAACCATGTCATCAAGAAATTTGAGCTTTGTGATTTCACCCCGATCTATGAATGGCACCTAAGAGAGAAGGAGAAGAAGAAGCAGATGACATCTGAGGAGAAGAAAGCATTGAAGGAAGAGAAATTGAAACAAGAGGAGAAGTACATGTGGGCTATTGTAGATGGTGTTAAAGAGAAGGTTGGCAATTTCAGAGTAGAACCACCTGGCTTGTTCAGGGGGCGCGGAGAGCATCCGAAGATGGGAATACTGAAGCGCCGCATTAAACCAAGCGATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAAGTTGGAAAGAAGTCAAACACGACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAATAAGCCAAAAAGATTTCAAGTATGTTTTCTTGGCAGCAAGCAGTGCATTAAAGGGCCAAAGTGACAAAGAGAAGTATGAGAAGTCTCGAAAATTGAAGCATCACGTACACAAAATTCGTGACACTTACACAAAGGATTTCA GAAGCAAAGATAAGACAAAGAAACAAATTGCAGTGGCAACATACCTTATAGATAAGTTAGCCCTTAGGGCAGGCAATGAGAAGGATGAAGATGAGGCTGAAACTGTTGGTTGCTGTACACTGAAGGTTGATAATGTTACTTGTGTTCCTCCAAATAAACTGCAGTTCGACTTCCTTGGTAAAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAACTGCTTGTATACAAGGCAATTGAGGAATTCCGTGCTGGCAAGAAACCAGGACAAGATCTCTTTGACAAACTCGATACAACCAGGCTAAATGCTCATCTAAAGGACTTGATGCCTGGGCTTACCGCAAAAGTGTTCCGTACATATAATGCTTCAATCACCTTGGATGATATTTTGCACAAAGAAACAGAAGATGGAACTCTTCTTGAAAAAATTGCGGTTTATCAACGAGCCAACAAAGAGGTTGCTATAATCTGTAACCATCAGCGTAGTGTCTCAAAATCACATGATTCCCAGATGACTAGATTGAATGAGAAGATTGATGAATTGAAGGCCCAAAGGGATGAATTGAAGGCAG ]
[+] EMBL CB632538             [                GTCGGAGGCAGCGGCGCGGGCGAGGCGAGGTGAGAGCGAGCGATAGAAATACGAGAGCGGGAGGAGAGGCGAGGAGAGAGAG  ACAGATAAGCTCAGCCCTAACCCTAGCTCCCCGCCT   CGCCGCCGCCGCCGCCGCCGCCGCACCGCTCCCCGGGGAGCGGGACGTCGCCACCGCGGCGCCTAGGTGTGGTTGACTCAGCATATTTGTTCCGTCTGCCAGCCGCCGCCCCTAGGGATCGATGGCTGTTGTCGATCCTGTTATGTTTGACAACGACGACGAGGAAGGTCCGATCTCCTTCAAGAGGTCGAGCACCTCTGTGAAGAACAGGCCCACCCCCACAAAGCAGGAGGGCTCATCAGGGAATGCCGGACCTATTAGG AGCCCT AAGGCTG TTGCTTCCAATC AAC AGAA GAAT GGGC TGACT  GGTG TTTCGA GGCCTTTGC AAC AGAGGCCG CAGTC AAGC AG TCCAAACCCTCG ACCTTTAGGATCAGGTCAGCCGAACAGTTCCAAAGAACATAGTAGCCATAATAGTAACTCAGTGGATAAGAGTAAATTGAAAAGACCTTTCGTGGAAGATAAGTCGGATGACTCAGAAGATGACCATAAGCCAATCGGATTAAGGAGAAAGGTCGAGGATAGAAATTTGAAGAAACCTGCTGTAGGAAGTGGGACAGCAAATGATTCAGATGATGATAAACCATTGAGTCTCAAGATAAACTCAACAAAAACGCCTTCGAGTAGTGCAAATAAGGCTATTGTACTGAAAACTACACCTAGAATTGAGCAACCTGGTGATGATTCAGAGGACGATAAACCACTGGCCAGCAGGGTGCCCAACT ATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK099134             [                    GAGGCAGCGGCGCGGGCGAGGCGAGGTGAGAGCGAGCGATAGAAATACGAGAGCGGGAGGAGAGGCGAGGAGAGAGAGACACAGATAAGCTCAGCCCTAACCCTAGCTCCCCGCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCACCGCTCCCCGGGGAGCGGGACGTCGCCGCCGCGGCGCCTAGGTGTGGTTGACTCAGCATATTTGTTCCGTCTGCCAGCCGCCGCCCCTAGGGATCGATGGCTGTTGTCGATCCTGTTATGTTTGACAACGACGACGAGGAAGGTCCGATCTCCTTCAAGAGGTCGAGCACCTCTGTGAAGAACAGGCCCACCCCCACAAAGCAGGAGGGCTCATCAGGGAATGCCGGACCTATTAGG AGCCCT AAGGCTG TTGCTTCCAATC AAC AGAA GAAT GGGC TGACT  GGTG TTTCGA GGCCTTTGC AAC AGAGGCCG CAGTC AAGC AG TCCAAACCCTCG ACCTTTGGGATCAGGTCAGCCGAACAGTTCCAAAGAACATAGTAGCCATAATAGTAACTCAGTGGATAAGAGTAAATTGAAAAGACCTTTCGTGGAAGATAAGTCGGATGACTCAGAAGATGACCATAAGCCAATCGGATTAAGGAGAAAGGTCGAGGATAGAAATTTGAAGAAACCTGCTGTAGGAAGTGGGACAGCAAATGATTCAGATGATGATAAACCATTGAGTCTCAAGATAAACTCAACAAAAACGCCTTCGAGTAGTGCAAATAAGGCTATTGTACTGAAAACTACACCTAAAATTGAGCAACCTGGTGATGATTCAGAGGACGATAAACCACTGGCCAGCAGGTTG CCAACTAATGCTGCTCTGAAAAGGGGAGGTAATGTTTCTGATGATTCAGAGGATGAGAAGCCATTGGCTGCCCGATTTTCGAAAGTTACTGGCAATGCATCTGCAAGTATCTCAAGTTCAAAGGACAAGGTCCTGTCTGCAAGCATAAAAGCAAGTTCTTCCAGCAAGATGTCTAACAATGACGCGAGCACATCACGAAATTCAATTAAAAGGCCAATTGACAATAATAATCAAACAAGTTCAGCTCTCAAGAAGGCGAGGCCTTCAGATGTTTCTGCGTCTGCAAGTGTCAAAAGAGAACCCAAGGCGGATGACAATGACAATGTACCTCTTTCACAAAGACTGAAAATGGGTGAGTCTTCAAAAAGCAAGCCACCTGCAAAGAATATCGTAAAGAAGAGTCCTTCATCTTTAAAGAAGGACAACAAGAAAATGAAAATGAAAATGAAAACAAAGAAAACAATGAAAAATTCTCAGTTCTCAAAGACAATGAAGGTCCCTCCTGGATCTGGTGGTGGACAGAAATGGACTACCTTGGTGCACAGTGGTGTTATTTTCCCCCCTCCATACAAGCCTCATGGTGTCAAGATGCTTTACAACGGGCAACCTGTTGATCTGACGCCAGAACAAGAAGAGGTTGCCACCATGTTTGCTGTGATGAAAGACACTGATTATGCATCCAAGCAAACATTCATTGACAACTTCTTCACTGATTGGAGAAAAATTCTTGGTAAAAACCATGTCATCAAGAAATTTGAGCTTTGTGATTTCACCCCGATCTATGAATGGCACCTAAGAGAGAAGGAGAAGAAGAAGCAGATGACATCTGAGGAGAAGAAAGCATTGAAGGAAGAGAAATTGAAACAAGAGGAGAAGTACATGTGGGCTATTGTAGATGGTGTTAAAGAGAAGGTTGGCAATTTCAGAGTAGAACCACCTGGCTTGTTCAGGGGGCGCGGAGAGCATCCGAAGATGGGAAAACTGAAGCGCCGCATTAAACCAAGCGATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAAGTTGGAAAGAAGTCAAACACGACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAATAAGCCAAAAAGATTTCAAGTATGTTTTCTTGGCAGC AGCAGTGCATTAAAGGGCCAAAGTGACAAAGAGAAGTATGAGAAGTCTCGAAAATTGAAGCATCACGTACACAAAATTCGTGACACTTACACAAAGGATTTCA GAAGCAAAGATAAGACAAAGAAACAAATTGCAGTGGCAACATACCTTATAGATAAGTTAGCCCTTAGGGCAGGCAATGAGAAGGATGAAGATGAGGCTGAAACTGTTGGTTGCTGTACACTGAAGGTTGATAATGTTACTTGTGTTCCTCCAAATAAACTGCAGTTCGACTTCCTTGGTAAAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAACTGCTTGTATACAAGGCAATTGAGGAATTCCGTGCTGGCAAGAAACCAGGACAAGATCTCTTTGACAAACTCGATACAACCAGGCTAAATGCTCATCTAAAGGACTTGATGCCTGGGCTTACCGCAAAAGTGTTCCGTACATATAATGCTTCAATCACCTTGGATGATATTTTGCACAAAGAAACAGAAGATGGAACTCTTCTTGAAAAAATTGCGGTTTATCAACGAGCCAACAAAGAGGTTGCTATAATCTGTAACCATCAGCGTAGTGTCTCAAAATCACATGATTCCCAGATGACTAGATTGAATGAGAAGATTGATGAATTGAAGGCCCAAAGGGATGAATTGAAGGCAG ]
[+] EMBL OSC386               [                                                                                                                                   ggagTCGCCGCCGCCGCCGCCGCCGCCGCCGCACCGCTCCCCGGGGAGCGGGACGTCGCCGCCGCGGCGCCTAGGTGTGGTTGACTCAGCATATTTNTTCCGTCTGCCAGCCGCCGNCCCTAGGGATCGATGGCTGTTGTCGATCCTGTTATGTTTGACAACGACGACGAGGAAGGTCCGATCTCCTTCAAGAGGTCGAGCACCTCTNTGAAGAACAGGCCCACCCCCACAAAGCAGGAGGGCTCATCAGGGAATGCCGGACCTATTAGGAAGCCCTAAAGGCTGTTTGCTTCCAATCAAACAAGAAGGAATGGGGCTTGACTTGGGTGTTTTCGAGGGCCTTTGCAAACAANAGGCCGNAAGTCAAAGCAAGTTCAAAACCCTTGNACCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB664086             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGACCTTTCGTGGAAGATAAGTCGGATGACTCAGAAGATGACCATAAGCCAATCGGATTAAGGAGAAAGGTCGAGGATAGAAATTTGAAGAAACCTGCTGTAGGAAGTGGGACAGCAAATGATTCAGATGATGATAAACCATTGAGTCTCAAGATAAACTCAACAAAAACGCCTTCGAGTAGTGCAAATAAGGCTATTGTACTGAAAACTACACCTAAAATTGAGCAACCTGGTGATGATTCAGAGGACGATAAACCACTGGCCAGCAGGTTG CCAACTAATGCTGCTCTGAAAAGGGGAGGTAATGTTTCTGATGATTCAGAGGATGAGAAGCCATTGGCTGCCCGATTTTCGAAAGTTACTGGCAATGCATCTGCAAGTATCTCAAGTTCAAAGGACAAGGTCCTGTCTGCAAGTATAAAAGCAAGTTCTTCCAGCAAGATGTCTAACAATGACGCGAGCACATCACGAAATTCAATTAAAAGGCCAATTGACAATAATAATCAAACAAGTTCAGCTCTCAAGAAGGCGAGGCCTTCAGATGTTTCTGCGTCTGNCAGTGTCAAAAGAGAACCCAAGGCGGATGACAATGACAATGTACCTCTTTCACAAAGACTGAAAATGGGTGAGTCTTCAAAAAGCAAGCCACCTGCAAAGAATATCGTAAAGAAGAGTCCTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB662493             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTGACAACTTCTTCACTGATTGGAGAAAAATTCTTGGTAAAAACCATGTCATCAAGAAATTTGAGCTTTGTGATTTCACCCCGATCTATGAATGGCACCTAAGAGAGAAGGAGAAGAAGAAGCAGATGACATCTGAGGAGAAGAAAGCATTGAAGGAAGAGAAATTGAAACAAGAGGAGAAGTACATGTGGGCTATTGTAGATGGTGTTAAAGAGAAGGTTGGCAATTTCAGAGTAGAACCACCTGGCTTGTTCAGGGGGCGCGGAGAGCATCCGAAGATGGGAAAACTGAAGCGCCGCATTAAACCAAGCGATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAAGTTGGAAAGAAGTCAAACACGACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAATAAGCCAAAAAGATTTCAAGTATGTTTTCTTGGCAGCAAGCAGTGCATTAAAGGGCCAAAGTGACAAAGAGAAGTATGAGAAGTCTCGAAAATTGAAGCATCACGTACACAAAATTCGTGACACTTACACAAAGGATTTCA GAAGCAAAGATAAGACAAAGAAACAAATTGCAGTGGCAACATACCTTATAGATAAGTTAGCCCTTAGGGCAGGCAATGAGAAGGATGAAGATGAGGCTGANACTGTTGGTTGCTGTACACTGAAGGTTGATAATGTTACTTGTGTTCCTCCAAATAAACTGCAGTTCGACTTCCTTGGTAAAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAACT                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB677759             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            attcttCAAGCGATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAAGTTGGAAAGAAGTCAAACACGACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAATAAGCCAAAAAGATTTCAAGTATGTTTTCTTGGCAGCAAGCAGTGCATTAAAGGGCCAAAGTGACAAAGAGAAGTATGAGAAGTCTCGAAAATTGAAGCATCACGTACACAAAATTCGTGACACTTACACAAAGGATTTCA GAAGCAAAGATAAGACAAAGAAACAAATTGCAGTGGCAACATACCTTATAGATAAGTTAGCCCTTAGGGCAGGCAATGAGAAGGATGAAGATGAGGCTGAAACTGTTGGTTGCTGTACACTGAAGGTTGATAATGTTACTTGTGTTCCTCCAAATAAACTGCAGTTCGACTTCCTTGGTAAAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAACTGCTTGTATACAAGGCAATTGAGGAATTCCGTGCTGGCAAGAAACCAGGACAAGATCTCTTTGACAAACTCGATACAACCAGGCTAAATGCTCATCTAAAGGACTTGATGCCTGGGCTTACCGCAAAAGTGTTCCGTACATATAATGCTTCAATCACCTTGGATGATATTTTGCACAAAGAAACAGAAGATGGAACTCTTCTTGAAAAAATTGCGGTTTATCAACGAGCCAACAAAGAGGTTGCTATAATCTGTAACCATCAGCGTAGTGTCTCAAAtc                                                                            ]
[+] EMBL CB677728             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            attcttCAAGCGATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAAGTTGGAAAGAAGTCAGACACGACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAATAAGCCAAAAAGATTTCGAGGATGTTTTCTTGGCAGCAAGCAGTGCATTAAAGGGCCAAAGTGACAAACAGAAGTATGAGAAGTCTCGAAAATTGAAGCATCACGGACACAAAATTCGTGACACTTACACAAAGGATTTCATGAAGCAAAGATAAGAGAAAGAAACAAATTGCAGTGGCAACATACCTTATAGATAAGTTAGCCCTTAGGGCATGCAATGAGAAGGATGAAGATGAGGCTGAAACTGTTGGTTGCTGTACACTGAAGGCTGATAATGTTACTTGTGTTCCTCCAAATAAACTGCAGCTCGACTTCCTTGGTAGAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAACTGCTTGTATACAAGGCAATTGACGAATTCCGAGCTGGCAAGAAACCAGGACAAGATCTCTTTGACAAACTCGATACAACCAGGCTAAATGCTCATCTAAAGGACTTGATGCCTGGGCTTACCGCAAAAGTGTTCCGTACATATAATGCTTCAATCACCTTGGATGATATTTTGCACAAAGAAACAGAAGATGGAACTCTTCTTGATAAAATTGCG                                                                                                                                            ]
[-] EMBL CB669314             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGACTAGATTGAATGAGAAGATTGATGAATTGAAGGCCCAAAGGGATGAATTGAAGGCAGA]




>consensus_12164#0
AGAGGGAGGGAGAGGAGTCGGAGGCAGCGGCGCGGGCGAGGCGAGGTGAGAGCGAGCGAT
AGAAATACGAGAGCGGGAGGAGAGGCGAGGAGAGAGAGACACAGATAAGCTCAGCCCTAA
CCCTAGCTCCCCGCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCACCGCTCCCCGGGGAGC
GGGACGTCGCCGCCGCGGCGCCTAGGTGTGGTTGACTCAGCATATTTGTTCCGTCTGCCA
GCCGCCGCCCCTAGGGATCGATGGCTGTTGTCGATCCTGTTATGTTTGACAACGACGACG
AGGAAGGTCCGATCTCCTTCAAGAGGTCGAGCACCTCTGTGAAGAACAGGCCCACCCCCA
CAAAGCAGGAGGGCTCATCAGGGAATGCCGGACCTATTAGGAGCCCTAAGGCTGTTGCTT
CCAATCAACAGAAGAATGGGCTGACTGGTGTTTCGAGGCCTTTGCAACAGAGGCCGCAGT
CAAGCAGTCCAAACCCTCGACCTTTGGGATCAGGTCAGCCGAACAGTTCCAAAGAACATA
GTAGCCATAATAGTAACTCAGTGGATAAGAGTAAATTGAAAAGACCTTTCGTGGAAGATA
AGTCGGATGACTCAGAAGATGACCATAAGCCAATCGGATTAAGGAGAAAGGTCGAGGATA
GAAATTTGAAGAAACCTGCTGTAGGAAGTGGGACAGCAAATGATTCAGATGATGATAAAC
CATTGAGTCTCAAGATAAACTCAACAAAAACGCCTTCGAGTAGTGCAAATAAGGCTATTG
TACTGAAAACTACACCTAAAATTGAGCAACCTGGTGATGATTCAGAGGACGATAAACCAC
TGGCCAGCAGGTTGCCAACTAATGCTGCTCTGAAAAGGGGAGGTAATGTTTCTGATGATT
CAGAGGATGAGAAGCCATTGGCTGCCCGATTTTCGAAAGTTACTGGCAATGCATCTGCAA
GTATCTCAAGTTCAAAGGACAAGGTCCTGTCTGCAAGTATAAAAGCAAGTTCTTCCAGCA
AGATGTCTAACAATGACGCGAGCACATCACGAAATTCAATTAAAAGGCCAATTGACAATA
ATAATCAAACAAGTTCAGCTCTCAAGAAGGCGAGGCCTTCAGATGTTTCTGCGTCTGCAA
GTGTCAAAAGAGAACCCAAGGCGGATGACAATGACAATGTACCTCTTTCACAAAGACTGA
AAATGGGTGAGTCTTCAAAAAGCAAGCCACCTGCAAAGAATATCGTAAAGAAGAGTCCTT
CATCTTTAAAGAAGGACAACAAGAAAATGAAAATGAAAATGAAAACAAAGAAAACAATGA
AAAATTCTCAGTTCTCAAAGACAATGAAGGTCCCTCCTGGATCTGGTGGTGGACAGAAAT
GGACTACCTTGGTGCACAGTGGTGTTATTTTCCCCCCTCCATACAAGCCTCATGGTGTCA
AGATGCTTTACAACGGGCAACCTGTTGATCTGACGCCAGAACAAGAAGAGGTTGCCACCA
TGTTTGCTGTGATGAAAGACACTGATTATGCATCCAAGCAAACATTCATTGACAACTTCT
TCACTGATTGGAGAAAAATTCTTGGTAAAAACCATGTCATCAAGAAATTTGAGCTTTGTG
ATTTCACCCCGATCTATGAATGGCACCTAAGAGAGAAGGAGAAGAAGAAGCAGATGACAT
CTGAGGAGAAGAAAGCATTGAAGGAAGAGAAATTGAAACAAGAGGAGAAGTACATGTGGG
CTATTGTAGATGGTGTTAAAGAGAAGGTTGGCAATTTCAGAGTAGAACCACCTGGCTTGT
TCAGGGGGCGCGGAGAGCATCCGAAGATGGGAAAACTGAAGCGCCGCATTAAACCAAGCG
ATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAA
GTTGGAAAGAAGTCAAACACGACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAA
TAAGCCAAAAAGATTTCAAGTATGTTTTCTTGGCAGCAAGCAGTGCATTAAAGGGCCAAA
GTGACAAAGAGAAGTATGAGAAGTCTCGAAAATTGAAGCATCACGTACACAAAATTCGTG
ACACTTACACAAAGGATTTCAGAAGCAAAGATAAGACAAAGAAACAAATTGCAGTGGCAA
CATACCTTATAGATAAGTTAGCCCTTAGGGCAGGCAATGAGAAGGATGAAGATGAGGCTG
AAACTGTTGGTTGCTGTACACTGAAGGTTGATAATGTTACTTGTGTTCCTCCAAATAAAC
TGCAGTTCGACTTCCTTGGTAAAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAAC
TGCTTGTATACAAGGCAATTGAGGAATTCCGTGCTGGCAAGAAACCAGGACAAGATCTCT
TTGACAAACTCGATACAACCAGGCTAAATGCTCATCTAAAGGACTTGATGCCTGGGCTTA
CCGCAAAAGTGTTCCGTACATATAATGCTTCAATCACCTTGGATGATATTTTGCACAAAG
AAACAGAAGATGGAACTCTTCTTGAAAAAATTGCGGTTTATCAACGAGCCAACAAAGAGG
TTGCTATAATCTGTAACCATCAGCGTAGTGTCTCAAAATCACATGATTCCCAGATGACTA
GATTGAATGAGAAGATTGATGAATTGAAGGCCCAAAGGGATGAATTGAAGGCAGA

consensusID : consensus_12164#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 106
fasta sequence

                              [GTGAGTCTTCAAAAAGCAAGCCACCTGNAAAGAATATCGTAAAGAAGAGTCCTTCATCTTTAAAGAAGGACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C99168               [GTGAGTCTTCAAAAAGCAAGCCACCTGNAAAGAATATCGTAAAGAAGAGTCCTTCATCTTTAAAGAAGGACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12164#1
GTGAGTCTTCAAAAAGCAAGCCACCTGNAAAGAATATCGTAAAGAAGAGTCCTTCATCTT
TAAAGAAGGACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12164#0      AGAGGGAGGGAGAGGAGTCGGAGGCAGCGGCGCGGGCGAGGCGAGGTGAGAGCGAGCGAT 60
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      AGAAATACGAGAGCGGGAGGAGAGGCGAGGAGAGAGAGACACAGATAAGCTCAGCCCTAA 120
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      CCCTAGCTCCCCGCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCACCGCTCCCCGGGGAGC 180
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      GGGACGTCGCCGCCGCGGCGCCTAGGTGTGGTTGACTCAGCATATTTGTTCCGTCTGCCA 240
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      GCCGCCGCCCCTAGGGATCGATGGCTGTTGTCGATCCTGTTATGTTTGACAACGACGACG 300
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      AGGAAGGTCCGATCTCCTTCAAGAGGTCGAGCACCTCTGTGAAGAACAGGCCCACCCCCA 360
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      CAAAGCAGGAGGGCTCATCAGGGAATGCCGGACCTATTAGGAGCCCTAAGGCTGTTGCTT 420
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      CCAATCAACAGAAGAATGGGCTGACTGGTGTTTCGAGGCCTTTGCAACAGAGGCCGCAGT 480
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      CAAGCAGTCCAAACCCTCGACCTTTGGGATCAGGTCAGCCGAACAGTTCCAAAGAACATA 540
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      GTAGCCATAATAGTAACTCAGTGGATAAGAGTAAATTGAAAAGACCTTTCGTGGAAGATA 600
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      AGTCGGATGACTCAGAAGATGACCATAAGCCAATCGGATTAAGGAGAAAGGTCGAGGATA 660
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      GAAATTTGAAGAAACCTGCTGTAGGAAGTGGGACAGCAAATGATTCAGATGATGATAAAC 720
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      CATTGAGTCTCAAGATAAACTCAACAAAAACGCCTTCGAGTAGTGCAAATAAGGCTATTG 780
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      TACTGAAAACTACACCTAAAATTGAGCAACCTGGTGATGATTCAGAGGACGATAAACCAC 840
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      TGGCCAGCAGGTTGCCAACTAATGCTGCTCTGAAAAGGGGAGGTAATGTTTCTGATGATT 900
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      CAGAGGATGAGAAGCCATTGGCTGCCCGATTTTCGAAAGTTACTGGCAATGCATCTGCAA 960
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      GTATCTCAAGTTCAAAGGACAAGGTCCTGTCTGCAAGTATAAAAGCAAGTTCTTCCAGCA 1020
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      AGATGTCTAACAATGACGCGAGCACATCACGAAATTCAATTAAAAGGCCAATTGACAATA 1080
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      ATAATCAAACAAGTTCAGCTCTCAAGAAGGCGAGGCCTTCAGATGTTTCTGCGTCTGCAA 1140
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      GTGTCAAAAGAGAACCCAAGGCGGATGACAATGACAATGTACCTCTTTCACAAAGACTGA 1200
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      AAATGGGTGAGTCTTCAAAAAGCAAGCCACCTGCAAAGAATATCGTAAAGAAGAGTCCTT 1260
consensus_12164#1      ------GTGAGTCTTCAAAAAGCAAGCCACCTGNAAAGAATATCGTAAAGAAGAGTCCTT 54
                             *************************** **************************

consensus_12164#0      CATCTTTAAAGAAGGACAACAAGAAAATGAAAATGAAAATGAAAACAAAGAAAACAATGA 1320
consensus_12164#1      CATCTTTAAAGAAGGACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------- 106
                       ********************** ****  ****  ****  **** *** **        

consensus_12164#0      AAAATTCTCAGTTCTCAAAGACAATGAAGGTCCCTCCTGGATCTGGTGGTGGACAGAAAT 1380
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      GGACTACCTTGGTGCACAGTGGTGTTATTTTCCCCCCTCCATACAAGCCTCATGGTGTCA 1440
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      AGATGCTTTACAACGGGCAACCTGTTGATCTGACGCCAGAACAAGAAGAGGTTGCCACCA 1500
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      TGTTTGCTGTGATGAAAGACACTGATTATGCATCCAAGCAAACATTCATTGACAACTTCT 1560
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      TCACTGATTGGAGAAAAATTCTTGGTAAAAACCATGTCATCAAGAAATTTGAGCTTTGTG 1620
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      ATTTCACCCCGATCTATGAATGGCACCTAAGAGAGAAGGAGAAGAAGAAGCAGATGACAT 1680
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      CTGAGGAGAAGAAAGCATTGAAGGAAGAGAAATTGAAACAAGAGGAGAAGTACATGTGGG 1740
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      CTATTGTAGATGGTGTTAAAGAGAAGGTTGGCAATTTCAGAGTAGAACCACCTGGCTTGT 1800
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      TCAGGGGGCGCGGAGAGCATCCGAAGATGGGAAAACTGAAGCGCCGCATTAAACCAAGCG 1860
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      ATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAA 1920
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      GTTGGAAAGAAGTCAAACACGACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAA 1980
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      TAAGCCAAAAAGATTTCAAGTATGTTTTCTTGGCAGCAAGCAGTGCATTAAAGGGCCAAA 2040
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      GTGACAAAGAGAAGTATGAGAAGTCTCGAAAATTGAAGCATCACGTACACAAAATTCGTG 2100
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      ACACTTACACAAAGGATTTCAGAAGCAAAGATAAGACAAAGAAACAAATTGCAGTGGCAA 2160
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      CATACCTTATAGATAAGTTAGCCCTTAGGGCAGGCAATGAGAAGGATGAAGATGAGGCTG 2220
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      AAACTGTTGGTTGCTGTACACTGAAGGTTGATAATGTTACTTGTGTTCCTCCAAATAAAC 2280
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      TGCAGTTCGACTTCCTTGGTAAAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAAC 2340
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      TGCTTGTATACAAGGCAATTGAGGAATTCCGTGCTGGCAAGAAACCAGGACAAGATCTCT 2400
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      TTGACAAACTCGATACAACCAGGCTAAATGCTCATCTAAAGGACTTGATGCCTGGGCTTA 2460
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      CCGCAAAAGTGTTCCGTACATATAATGCTTCAATCACCTTGGATGATATTTTGCACAAAG 2520
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      AAACAGAAGATGGAACTCTTCTTGAAAAAATTGCGGTTTATCAACGAGCCAACAAAGAGG 2580
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      TTGCTATAATCTGTAACCATCAGCGTAGTGTCTCAAAATCACATGATTCCCAGATGACTA 2640
consensus_12164#1      ------------------------------------------------------------
                                                                                   

consensus_12164#0      GATTGAATGAGAAGATTGATGAATTGAAGGCCCAAAGGGATGAATTGAAGGCAGA 2695
consensus_12164#1      -------------------------------------------------------