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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1046 fasta sequence
[CCTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTGGCTCTGATTTTTGCACACACCGAAAAATA-TCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCACTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTTGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAAACCATAGAAGAGAGCAAAAATGTTTTAGGGAAGCACAATGTGGTTATATAATATTATAGGTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTTGCCTGCTGATGAATACCTTCGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTAATTTACTTCGTTATGTAATCTATTGTGTTTTTGGTCGGTTTGAACCCACANTTACCTTCTTGCTGTNAATGCTGCATCATTAAGCAAGNCTGCAAATTTGACGNTCGAGTTCAAAAAAAAAAAAAANANNAAAAAAAAAAAAAGGGCGGNCCCCA]
[+] EMBL CF313357 [CCTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTGGCTCTGA TTTTGCACACACCGAAAAATA TCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAA ]
[+] EMBL CF296558 [CCTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTGGCTCTGATTTTTGCACACACCGAAAAATA TCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCCTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTG ]
[+] EMBL AK065132 [ CTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTGGCTCTGATTTTTGCACACACCGAAAAATA TCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCACTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTTGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAAACCATAGAAGAGAGCAAAAATGTTTTAGGGAAGCACAATGTGGTTATATAATATTATAGGTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTTGCCTGCTGATGAATACCTTCGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTAATTTACTTCGTTATGTAATCTATTGTGTTTTTGGTCG ]
[+] EMBL CB666651 [ CTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTGGCTCTGATTTTTGCACACACCGAAAAATA TCCGGATGAGCCTCCGCTTTTGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCACTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTTGATGAAGACTTCGATGATGACGAAGAAGACATGCT ]
[+] EMBL AU065490 [ CTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAG GNGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTTGCTCTGATTTTTGCACACACCGNAAAATATTCCGGATGAGCCTCCGTTTTTGAATGTCAAAAGTGTACGAGGGATTGAATCAG AGATCTTGCATCTTTG AAGAAAAG TTTAGCAAGngcact ]
[+] EMBL BP184915 [ acgAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAGCACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTCGGCTTATGTGCCAGTCCAACTGGCTCTGATTTTTGCACACACCGAAAAATA TCCGGATGAGCCTCCGCTTATGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAA ]
[-] EMBL CB666652 [ AAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTTGAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCTTGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCCCTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTTGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAAACCATAGAAGAGAGCAAAAATGTTTTAGGGAAGCACAATGTGGTTATATAATATTATAGGTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTTGCCTGCTGATGAATACCTTCGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGAGGGTGCGTAATTTACT ]
[-] EMBL CF296559 [ CAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCACTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTTGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAAACCATAGAAGAGAGCAAAAAT TTTTAGGGAAGCACAATG GGTTATATAATA TATAGGT AAGCCT CCAaaaaa ]
[+] EMBL OSS10801A [ GCAAAAATGTTTTAGGGAAGCACAATGTGGTTATATAATATTATAGGTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTTGCCTGCTGATGAATACCTTCGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTAATTTACTTCGNTATGNAATCTATTGTGTTTTTGGNCGGTTTGAACCCACANTTACCTTCTTGCTGTNAATGCTGCATCATTAAGCAAGNCTGCAAATTTGACGNTCGAGTTCAAAAAAAAAAAAAANANNAAAAAAAAAAAAAGGGCGGNCCCCA]
consensusID : consensus_12169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[AGGGGGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGGGAGATCGTTTTGAAGCTGAATTGGCGCTACAGTGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAGGGCATGCAATGAAAGGAGCAAGTACCCCTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTCGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAGACCATAGAAGAGGACACTTTGAGCAAAAATGTTTTAGGGAAGCTCAATGTGGTTATATAATATTATAGGTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTGCCTGCTGGTGAGTACCTTCGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTAATTTACTTCGTTATGTAAAAAAAAAAAAAA]
[-] EMBL CA760088 [AGGGGGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGAATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGGGAGATCGTTTTGAAGCTGAATTGGCGCTACAGTGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTATTTTGAAAGTGGAGGGCATGCAATGAAAGGAGCAAGTACCCCTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACTTCGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAGACCATAGAAGAGGACACTTTGAGCAAAAATGTTTTAGGGAAGCTCAATGTGGTTATATAATATTATAGGTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTGCCTGCTGGTGAGTACCTTCGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTAATTTACTTCGTTATGTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12169#0 CCTGCAGGCCATCCTCATGGACGACATCAAGGAGATCGACCCCAGCGAGAGCGGGCTCAG 60
consensus_12169#1 ------------------------------------------------------------
consensus_12169#0 CACCACGGCTCGCTGCTTCCAGATCGTGCTCTCCCCTCAGGATGATGATTTCGATGAGTC 120
consensus_12169#1 ------------------------------------------------------------
consensus_12169#0 GGCTTATGTGCCAGTCCAACTGGCTCTGATTTTTGCACACACCGAAAAATATCCGGATGA 180
consensus_12169#1 ------------------------------------------------------------
consensus_12169#0 GCCTCCGCTTTTGAATGTCAAAAGTGTACGAGGAATGAAATCAGAAGATCTTGCATCCTT 240
consensus_12169#1 ------------------------------------------------------------
consensus_12169#0 GAAAGAAAAGCTTGAGCAAGAGGCAACTGAAAATCTCGGCATGGCTATGGTCTATACTCT 300
consensus_12169#1 ------------------------------------------------------------
consensus_12169#0 TGTCACATCGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGA 360
consensus_12169#1 ----AGGGGGGCACAAGATTGGTTAAGTGAGAAATATGGACAGAATGCTGGAGATGGGGA 56
* ***************************************************
consensus_12169#0 ATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTAC 420
consensus_12169#1 ATCTGAAGAAAATGAGGCAGAAGAAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTAC 116
************************************************************
consensus_12169#0 TGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAATTGGCGCTACAGCGTGC 480
consensus_12169#1 TGTAGAGAGCTTTCTGGCTTGGGGAGATCGTTTTGAAGCTGAATTGGCGCTACAGTGTGC 176
********************** ******************************** ****
consensus_12169#0 CAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACA 540
consensus_12169#1 CAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACA 236
************************************************************
consensus_12169#0 GTATTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCACTGCTGACGAAGAGGA 600
consensus_12169#1 GTATTTTGAAAGTGGAGGGCATGCAATGAAAGGAGCAAGTACCCCTGCTGACGAAGAGGA 296
**************** ***** ******************** ****************
consensus_12169#0 GGAAGAAGAGGAAGACATCGACTTTGATGAAGACTTCGATGATGACGAAGAGGACATGCT 660
consensus_12169#1 GGAAGAAGAGGAAGACATCGACTTCGATGAAGACTTCGATGATGACGAAGAGGACATGCT 356
************************ ***********************************
consensus_12169#0 TGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAAACCATAGA 720
consensus_12169#1 TGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAAGGCTTCAAGACCATAGA 416
*************************************************** ********
consensus_12169#0 AGAG---------AGCAAAAATGTTTTAGGGAAGCACAATGTGGTTATATAATATTATAG 771
consensus_12169#1 AGAGGACACTTTGAGCAAAAATGTTTTAGGGAAGCTCAATGTGGTTATATAATATTATAG 476
**** ********************** ************************
consensus_12169#0 GTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTTTGCCTGCTGATGAATACCTT 831
consensus_12169#1 GTGAAGCCTACCATTTTGTGCGTTTTCCCATGAATTGGTT-GCCTGCTGGTGAGTACCTT 535
**************************************** ******** *** ******
consensus_12169#0 CGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTA 891
consensus_12169#1 CGAGAGGTTATCATCAATCTGATTTGAGTGTATTAAAGATGAACATACAGCGGCTGCGTA 595
************************************************************
consensus_12169#0 ATTTACTTCGTTATGTAATCTATTGTGTTTTTGGTCGGTTTGAACCCACANTTACCTTCT 951
consensus_12169#1 ATTTACTTCGTTATGTAAAAAAAAAAAAAA------------------------------ 625
****************** *
consensus_12169#0 TGCTGTNAATGCTGCATCATTAAGCAAGNCTGCAAATTTGACGNTCGAGTTCAAAAAAAA 1011
consensus_12169#1 ------------------------------------------------------------
consensus_12169#0 AAAAAANANNAAAAAAAAAAAAAGGGCGGNCCCCA 1046
consensus_12169#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||