cluster # 12171

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Oryza sativa
cluster # 12171 cluster # 12171 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12171#0 length = 2312 sequences # 9

consensus_12171#1 length = 669 sequences # 1

consensusID : consensus_12171#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2312
fasta sequence

                              [GNGNCAACAGTAGTAGTAGTACCTGATTATCCATCCCTAACAAATCCCACTTCCCCACACACGCCAAAAGCCTCTCCTCTCCTTTCCTCCTCCTCCAGTCCTCCTCACTGTCCGTCCCAAGAACCAC-TCGGTGCAGCCGCCGCCGCCGCCGCAGCCAGTGCCATTGCAAGAATCGCGAGGGGGTATTGAGGTTGGGCGGCGAGATGAGCATGTACGGGAGGGACCCGTGGGGCGGGCCGCTGGAGATATGCCACGAC-TCGGCGACGGACGACGACCGGAGCCGGAACCTGGACCTGGACAGGGGGGCGCTGTCGCGGACGCTGGACGAGACGCAGCAGAGCTGGCTGCTGGCCGGGCCGGGGGACCAGGGCCGGAAGAAGAAGAAGTACGTCGACCTCGGCTGCCTCGTCGTCAGCCGCAAGCTCTTCGTGTGGACGGTCGGGGTGCTCCTCGCCGCCGCCGACTTCGCCGGGCTCGTCGCCGGCATCGCCAAGGCCATCCCCAGGCACCACCGCCCGCCGCCGCCGCCGGACGACTTCACCGTCGCGCTGCGCAAGGCGCTCATGTTCTTCAATGCCCAGAAATCTGGAAAGCTTCCGAAGAACAACAATGTGCATTGGCGTGGTAACTCGTGCATGAAGGACGGACTCTCGGATCCGGCAGTCGGGCGCAGCCTCGTCGGAGGGTACTACGACGCCGGCGACGCCGTCAAGTTCAACTTTCCAGCTGCCTTCTCCATGACCCTCCTCAGCTGGAGCGTCATCGAGTACAGTGCTATATACGAGGCAGTTGGGGAACTTGGCCATATCCGTGATACCATCAAGTGGGGGGGCGCGAACTTCTTGAAGACCTTCAACTCAACGGCGGATACCATTGATCGTGTCGTTATGCAGGTGGGGAGCGGTGCAACATCACCCGGTTCGACTCAACCGAACGATCACTATTGTTGGATGAGACCAGAGGACATTGACTACCCTCGCCCAGTAGTTGAGTGCCATGCTTGTTCAGATCTTGCGGCTGAGATGGCTGCATCATTGGCAGCAGCATCAATTGTGTTCAAGGACAATAAGGCGTACTCGCAGAAGCTGGTACATGGTGCTACCACCCTCTTCAAGTTTGCAAGGCAAAACCGTGGAAGATATAGTGCAGGTGGTTCCGATGCTGCAAAATTCTATAACTCAACCAGCTACTGGGATGAGTTTGTATGGGGTGGTTCATGGATGTATCTCGCAACCGGCAATTCATCGTACCTGCAGTTGGCAACACACCCCAAGCTTGCAAAGCATGCTGGTGCTTACTGGGGTGGTCCAGACTACGGTGTATTCAGCTGGGACAATAAGCTTACTGGTGCACAGGTTCTTTTGAGCCGGTTAAGGCTCTTCTTAAGTCCTGGTTATCCATATGAAGAGATCCTCAGGACATTCCACAATCAAACAAGCATTATTATGTGCTCTTATCTTCCAATTTTCAAGTCTTTCAACAGGACAAAAGGTGGTTTGATCCAGTTGAATCACGGGAGGCCACAACCTCTTCAGTATGTGGTGAACGCTGCATTCCTTGCTTCTTTGTACGGTGACTATCTTGAGGCTGCAGATACCCCTGGCTGG-TATTGTGGGCCCCATTTCTACCCAATTGAAACTCTG-CGCAATTTTGCAAGAACTC-AAATCGAATACATCTTAGGAAAAAATCCTTTG-AAGATG-AGCTATGTGGTTGGTTACGGAAACCGTTACCCTAAACGTGTTCATCAT-CGGGGTGCCTCGATCCCAAAGAATGGTGTCCACTACGGTTGCAAAGGAGGTTGGAAGTGGAGAGAAACCAAGAAACCAAACCCTAACATCATCGTCGGAGCGATGGTAGCTGGCCCTGATCGCCACGACGGCTT-CAAGGATGTTCGCAAGAATTACAACTAC-ACGGAAGCAACTCTAG-CTGGCAATGCCGGTCTAGTTGCAGCATTAGTAG-CATTGTCAGGTGAAGGCCATGGCGTGGATAAGAACACTATGTTTTCTGCCGTGCCGCCGATGTTCCCTTCGCCCCCACCGCCTCCGGCACCATGGAAACCATGATTGGCTGCCACTATC-TGATTCTGATTCATTTTGTATACGGCTTATTTAGATTAGTGTTTTTCTCCCTTGTTCTGGAAATGCTGGGGGAAACCTAACAGAAAAGAAGGCGTCAGGTTTTTATCTTTGTTTCTCCCA-TTGTTGTATACTTGTATAATCCCCATGTTATGTAACACTATTGCTGTTCTGGTATGAACCTAGTAATTAATACTATAAAAAAAAATGGATTTGTGGGAGTTAGATTTTTAAAAA]

[+] EMBL OSC111711            [GNGNCAACAGTAGTAGTAGTACCTGATTATCCATCCCTAACAAATCCCACTTCCCCACACACGCCAAAAGCCTCTCCTCTCCTTTCCTCCTNCTCCAGTCCTCCTCACTGTCCGTCCCAAGAACCAC TCGGTGCAGCAGCCGCCGCCGCCGCAGCCAGTGCCATTGCAAGATTCGCGAGGGGGTATTGAGGTTGGGCGGCGAGATGAGCATGTACGGGAGGGACCCGTGGGGNGGGCCGCTNGAGATATGCCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C27053               [                                                                  AAAGCCTCTCCTCTCCTTTCCTCCTCCTCCAGTCCTCCTCACNGTCCGTCCCAAGAACCAC TCGGTGCAGCCNCCGCCGCCGCCGCAGCCAGTGCCATTGCAAGAATCGCGAGGGGGTATTGAGGTTGGNCNGCGAGATGAGCATGTACGGGAGGGACCCGTGGGGNGGGCCGCTGGAGATATGCCACGAC TCGGCGACGGACGACGACCNGAGCCGGNACCTGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB661172             [                                                                                CCTTTCCTCCTCCTCCAGGCCTCCTCACTGTCCGTCCCAAGAACCACATCGGTGCAGCCGCCGCCGCCGCCGCAGCCAGTGCCATTGCAAGAATCGCGAGGGGGTATTGAGGTTGGGCGGCGAGATGACCATGTACGGGAGGGACCCGGGGGGCGGGCCGCTGGAGATATGCCACGAC TCGGCGACGGACGACGACCGGAGCCGGAACCTGGACCTGGACAGGGGGGCGCTGTCGCGGACGCTGGACGAGACGCAGCAGAGCTGGCTGCTGGCCGGGCCGGGGGACCAGGGCCGGAAGAAGAAGAAGTACGTCGACCTCGGCTGCCTCGTCGTCAGCCGCAAGCTCTTCGTGTGGACGGTCGGGGTGCTCCTCGCCGCCGCCGACTTCGCCGGGCTCGTCGCCGGCATCGCCAAGGCCATCCCCAGGCACCACCGCCCGCCGCCGCCGCCGGACGACTTCACCGTCGCGCTGCGCAAGGCGCTCATGTTCTTCAATGCCCAGAAATCTGGAAAGCTTCCGAAGAACAACAATGTGCATTGGCGTGGTAACTCGTGCATGAAGGACGGACTCTCGGATCCGGCAGTCGGGCGCAGCCTCGTCGGAGGGTACTACGACGCCGGCGACGCCGTCAAGTTCAACTTTCCAGCTGCCTTCTCCATGACCCTCCTCAGCTGGAGCGTCATCGAGTACAGTGCTATATACGAGGCAGTTGGGGAACTTGGCCATATCCGTGATACCATCAAGTGGGGGGGCGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK102748             [                                                                                                        TCACTGTCCGTCCCAAGAACCAC TCGGTGCAGCCGCCGCCGCCGCCGCAGCCAGTGCCATTGCAAGAATCGCGAGGGGGTATTGAGGTTGGGCGGCGAGATGAGCATGTACGGGAGGGACCCGTGGGGCGGGCCGCTGGAGATATGCCACGAC TCGGCGACGGACGACGACCGGAGCCGGAACCTGGACCTGGACAGGGGGGCGCTGTCGCGGACGCTGGACGAGACGCAGCAGAGCTGGCTGCTGGCCGGGCCGGGGGACCAGGGCCAGAAGAAGAAGAAGTACGTCGACCTCGGCTGCCTCGTCGTCAGCCGCAAGCTCTTCGTGTGGACGGTCGGGGTGCTCCTCGCCGCCGCCGTCTTCGCCGGGCTCGTCGCCGGCATCGCCAAGGCCATCCCCAGGCACCACCGCCCGCCGCCGCCGCCGGACGACTTCACCGTCGCGCTGCGCAAGGCGCTCATGTTCTTCAATGCCCAGAAATCTGGAAAGCTTCCGAAGAACAACAATGTGCATTGGCGTGGTAACTCGTGCATGAAGGACGGACTCTCGGATCCGGCAGTCGGGCGCAGCCTCGTCGGAGGGTACTACGACGCCGGCGACGCCGTCAAGTTCAACTTTCCAGCTGCCTTCTCCATGACCCTCCTCAGCTGGAGCGTCATCGAGTACAGTGCTAAATACGAGGCAGTTGGGGAACTTGGCCATATCCGTGATACCATCAAGTGGGGGGCCGATTACTTCTTGAAGACCTTCAACTCAACGGCGGATACCATTGATCGTGTCGTTATGCAGGTGGGGAGCGGTGCAACATCACCCGGTTCGACTCAACCGAACGATCACTATTGTTGGATGAGACCAGAGGACATTGACTACCCTCGCCCAGTAGTTGAGTGCCATGCTTGTTCAGATCTTGCGGCTGAGATGGCTGCATCATTGGCAGCAGCATCAATTGTGTTCAAGGACAATAAGGCGTACTCGCAGAAGCTGGTACATGGTGCTACCACCCTCTTCAAGTTTGCAAGGCAAAACCGTGGAAGATATAGTGCAGGTGGTTCCGATGCTGCAAAATTCTATAACTCAACCAGCTACTGGGATGAGTTTGTATGGGGTGGTTCATGGATGTATCTCGCAACCGGCAATTCATCGTACCTGCAGTTGGCAACACACCCCAAGCTTGCAAAGCATGCTGGTGCTTACTGGGGTGGTCCAGACTACGGTGTATTCAGCTGGGACAATAAGCTTACTGGTGCACAGGTTCTTTTGAGCCGGTTAAGGCTCTTCTTAAGTCCTGGTTATCCATATGAAGAGATCCTCAGGACATTCCACAATCAAACAAGCATTATTATGTGCTCTTATCTTCCAATTTTCAAGTCTTTCAACAGGACAAAAGGTGGTTTGATCCAGTTGAATCACGGGAGGCCACAACCTCTTCAGTATGTGGTGAACGCTGCATTCCTTGCTTCTTTGTACGGTGACTATCTTGAGGCTGCAGATACCCCTGGCTGG TATTGTGGGCCCCATTTCTACCCAATTGAAACTCTG CGCAATTTTGCAAGAACTC AAATCGAATACATCTTAGGAAAAAATCCTTTG AAGATG AGCTATGTGGTTGGTTACGGAAACCGTTACCCTAAACGTGTTCATCAT CGGGGTGCCTCGATCCCAAAGAATGGTGTCCACTACGGTTGCAAAGGAGGTTGGAAGTGGAGAGAAACCAAGAAACCAAACCCTAACATCATCGTCGGAGCGATGGTAGCTGGCCCTGATCGCCACGACGGCTT CAAGGATGTTCGCAAGAATTACAACTAC ACGGAAGCAACTCTAG CTGGCAATGCCGGTCTAGTTGCAGCATTAGTAG CATTGTCAGGTGAAGGCCATGGCGTGGATAAGAACACTATGTTTTCTGCCGTGCCGCCGATGTTCCCTTCGCCCCCACCGCCTCCGGCACCATGGAAACCATGATTGGCTGCCACTATC TGATTCTGATTCATTTTGTATACGGCTTATTTAGATTAGTGTTTTTCTCCCTTGTTCTGGAAATGCTGGGGGAAACCTAACAGAAAAGAAGGCGTCAGGTTTTTATCTTTGTTTCTCCCA TTGTTGTATACTTGTATAATCCCCATGTTATGTAACACTATTGCTGTTCTGGTATGAACCTAGTAATTAATACTAT                                      ]
[+] EMBL C28145               [                                                                                                                                                                                              GGTTGGGCGGCGAGATGAGCATGTACGGGAGGGACCCGTGGGGCGGGCCGCTGGAGATATGCCACGACTTTTGCGACGGACGACGACCGGAGCCGGAACCTGGACCTGGACAGGGGGGCGCTGTCGCGGACGCTGGACGAGACGCAGCAGAGCTGGCTGCTGGCCGGGCCGGGGGACCAGGGCCNNAAGAAGAAGAAGTACGTCGACCTCGGCTGCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU065486             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCAACTCAACGGCGGATACCATTGATCGTNTCGTTATGCAGGTGGGGAGCGGTGCAACATCACCCGGTTCGACTCAACCGAACGATCACTATTGTTGGATGAGACCAGAGGACATTGACTACCCTCGCCCAGTAGTTGAGTGCCATGCTTGTTCAGATCTTGCGGCTGAGATGGCTGCATCATTGGCAGCAGCATCAATTGTNTTCAAGGACAATAAGGCGTACTCGCAGAAGCTGGTACATGGTGCTACCACCCTCTTCAAGTTTTCAAGGCAAAACCGTGGAAGATATAGTGCAGGTGGTTCCGATGCTGC AAATTCTATAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C97417               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACCCCTGGNTGGTTATTGTGGGCCCCATTTCTCCCCAATTGAANCTCTGCCCCAATTTTGC AGAACTCAAAATCGAATACATCTTAGGAAAAATCCCTTTGAAAGATGTAGCTATGTGGTTGGTTACGGAAACCGTTACCCTAAACGTGTTCATCATCCGGGGTGCCTCGATCCCAAAGAATGGTGTCCACTACGGTTGCAAAGGAGGTTGGAAGTGGAGAGAAACCAAGAAACCAAA CCTAACATCATCGTCGGAGCGATGGTAGCTGGCCCTGATCGCCACGACGGCTTCCAAGGATGTTCGCAAGAATTACAACTAC ACGGAAGCAACTCTAGTCTGGCAATGCCGGTCTAGTTGCAGCATTAGTAGCCATTGTCAGGTGAAGGCCATGGCGTGGATAAGAACACTATGTTTTCTGCCGTGCCGCCGATGTT CCTTCGCCCCCANC CCTCCGGCACCATGGAAACCATGATTGGCTGCCACTATC TGATTCTGATTCATTTTGTATACGGCTTATTTAGATTAGTGTTTTTCTCCCTTGTTCTGGAAATGCTGGGGGAAACCTAACAGAAAAGAAGGCGTCAGGTTTTTATCTTTGTTTCTCCCA TTGTTGTATACTTGTATAATCCCCATGTTATGTAACACTATTGCTGTTCTGGTATGAACCTAGTAATTAATNCTAAAAAAAAAAA                             ]
[-] EMBL CB661173             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGCTGG TATTGTGGGCCCCATTTTTACCCAATTGAAACTCTG CGCAATTTTGCAAGAACTT AAATTGAATTCATTTTAGGAAAAAATCCTTTG AAGATG AGCTATGGGGTTGGTTAGGGAAACCGTTACCCTAAACGTGTTCATCAT GGGGGTGCCTTGATCCCAAAGAATGGTGTCCAATTCGGTTGCAAAGGAGGTTGGAAGGGGGGAGAAACCAAGAAACCAACCCCTAACATCATCGTTGGAGCGATGGTAGATGGCCCTTATCTCCCCGACGGCTT CAAGGATGTTTGCAAGAATTTCAAATAC ACGGAAGCAACTCTAG ATGGCAATTCCGGTTTAGTTGCAGCATTAGTAG CATTGTCAGGGGAAGGCCATGGGGTGGATAAGAACCCTATGTTTTCTGCCGTGCCGCCGATGTTCCCTTGGCCCCCCCCGCCTCCGGCCCCATGGAAACCATGATTGGCTGCCACTATT TGATTTTGATTCATTTTGTATACGGCTTATTTAGATTAGGGTTTTTTTCCCTTGTTTTGGAAATGCTGGGGGAAACCTAACAGAAAAGAAGGGGTCAGGTTTTTATCTTTGTTTTTCCCACTTGTTGTAT                                                                                                         ]
[+] EMBL BI799164             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gtTTGGAAGTGGAGAGAAACCAAGAAACCTAACCCTAACATCATCGTCGGAGCGATGGTAGCTGGCCCTGATCGCCACGACGGCTT CAAGGATGTTCGCAAGAATTACAACTACGACGGAAGCAACTCTAG CTGGCAATGCCGGTCTAGTTGCAGCATTAGTAG CATTGTCAGGTGAAGGCCATGGCGTGGATAAGAACACTATGTTTTCTGCCGTGCCGCCGATGTTCCCTTCGCCCCCACCGCCTCCGGCACCATGGAAACCATGATTGGCTGCCACTATCATGATTCTGATTCATTTTGTATACGGCTTATTTAGATTAGTGTTTTTCTCCCTTGTTCTGGAAATGCTGGGGGAAACCTAACAGAAAAGAAGGCGTCAGGTTTTTATCTTTGTTTCTCCCA TTGTTGTATACTTGTATAATCCCCATGTTATGTAACACTATTGCTATTCTGGTATGAACCTAGTAATTAATACTATCTTTCCTCGTGGATTTGTGGGAGTTAGATTTTTAAAAA]




>consensus_12171#0
GNGNCAACAGTAGTAGTAGTACCTGATTATCCATCCCTAACAAATCCCACTTCCCCACAC
ACGCCAAAAGCCTCTCCTCTCCTTTCCTCCTCCTCCAGTCCTCCTCACTGTCCGTCCCAA
GAACCACTCGGTGCAGCCGCCGCCGCCGCCGCAGCCAGTGCCATTGCAAGAATCGCGAGG
GGGTATTGAGGTTGGGCGGCGAGATGAGCATGTACGGGAGGGACCCGTGGGGCGGGCCGC
TGGAGATATGCCACGACTCGGCGACGGACGACGACCGGAGCCGGAACCTGGACCTGGACA
GGGGGGCGCTGTCGCGGACGCTGGACGAGACGCAGCAGAGCTGGCTGCTGGCCGGGCCGG
GGGACCAGGGCCGGAAGAAGAAGAAGTACGTCGACCTCGGCTGCCTCGTCGTCAGCCGCA
AGCTCTTCGTGTGGACGGTCGGGGTGCTCCTCGCCGCCGCCGACTTCGCCGGGCTCGTCG
CCGGCATCGCCAAGGCCATCCCCAGGCACCACCGCCCGCCGCCGCCGCCGGACGACTTCA
CCGTCGCGCTGCGCAAGGCGCTCATGTTCTTCAATGCCCAGAAATCTGGAAAGCTTCCGA
AGAACAACAATGTGCATTGGCGTGGTAACTCGTGCATGAAGGACGGACTCTCGGATCCGG
CAGTCGGGCGCAGCCTCGTCGGAGGGTACTACGACGCCGGCGACGCCGTCAAGTTCAACT
TTCCAGCTGCCTTCTCCATGACCCTCCTCAGCTGGAGCGTCATCGAGTACAGTGCTATAT
ACGAGGCAGTTGGGGAACTTGGCCATATCCGTGATACCATCAAGTGGGGGGGCGCGAACT
TCTTGAAGACCTTCAACTCAACGGCGGATACCATTGATCGTGTCGTTATGCAGGTGGGGA
GCGGTGCAACATCACCCGGTTCGACTCAACCGAACGATCACTATTGTTGGATGAGACCAG
AGGACATTGACTACCCTCGCCCAGTAGTTGAGTGCCATGCTTGTTCAGATCTTGCGGCTG
AGATGGCTGCATCATTGGCAGCAGCATCAATTGTGTTCAAGGACAATAAGGCGTACTCGC
AGAAGCTGGTACATGGTGCTACCACCCTCTTCAAGTTTGCAAGGCAAAACCGTGGAAGAT
ATAGTGCAGGTGGTTCCGATGCTGCAAAATTCTATAACTCAACCAGCTACTGGGATGAGT
TTGTATGGGGTGGTTCATGGATGTATCTCGCAACCGGCAATTCATCGTACCTGCAGTTGG
CAACACACCCCAAGCTTGCAAAGCATGCTGGTGCTTACTGGGGTGGTCCAGACTACGGTG
TATTCAGCTGGGACAATAAGCTTACTGGTGCACAGGTTCTTTTGAGCCGGTTAAGGCTCT
TCTTAAGTCCTGGTTATCCATATGAAGAGATCCTCAGGACATTCCACAATCAAACAAGCA
TTATTATGTGCTCTTATCTTCCAATTTTCAAGTCTTTCAACAGGACAAAAGGTGGTTTGA
TCCAGTTGAATCACGGGAGGCCACAACCTCTTCAGTATGTGGTGAACGCTGCATTCCTTG
CTTCTTTGTACGGTGACTATCTTGAGGCTGCAGATACCCCTGGCTGGTATTGTGGGCCCC
ATTTCTACCCAATTGAAACTCTGCGCAATTTTGCAAGAACTCAAATCGAATACATCTTAG
GAAAAAATCCTTTGAAGATGAGCTATGTGGTTGGTTACGGAAACCGTTACCCTAAACGTG
TTCATCATCGGGGTGCCTCGATCCCAAAGAATGGTGTCCACTACGGTTGCAAAGGAGGTT
GGAAGTGGAGAGAAACCAAGAAACCAAACCCTAACATCATCGTCGGAGCGATGGTAGCTG
GCCCTGATCGCCACGACGGCTTCAAGGATGTTCGCAAGAATTACAACTACACGGAAGCAA
CTCTAGCTGGCAATGCCGGTCTAGTTGCAGCATTAGTAGCATTGTCAGGTGAAGGCCATG
GCGTGGATAAGAACACTATGTTTTCTGCCGTGCCGCCGATGTTCCCTTCGCCCCCACCGC
CTCCGGCACCATGGAAACCATGATTGGCTGCCACTATCTGATTCTGATTCATTTTGTATA
CGGCTTATTTAGATTAGTGTTTTTCTCCCTTGTTCTGGAAATGCTGGGGGAAACCTAACA
GAAAAGAAGGCGTCAGGTTTTTATCTTTGTTTCTCCCATTGTTGTATACTTGTATAATCC
CCATGTTATGTAACACTATTGCTGTTCTGGTATGAACCTAGTAATTAATACTATAAAAAA
AAATGGATTTGTGGGAGTTAGATTTTTAAAAA

consensusID : consensus_12171#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [AATTTTGCAAGAACTCAAATCGAATACATCTTAGGAAAAAATCCTTTGAAGATGAGCTATGTGGTTGGTTACGGAAACCGTTACCCTAAACGTGTTCATTATCGGGGTGCCTCGATCCCAAAGAATGGTGTCCACTACGGTTGCAAAGGAGGTTGGAAGTGGAGAGAAACCAAGAAACCAAAACCCTAACATTATTGTCGGAGCGATGGTAGCTGGCCCTGATCGCCACGACGGCTTCAAGGATGTTCGCAAGAATTACAACTACACGGAAGCAACTCTAGCTGGCAATGCCGGTCTAGTTGCAGCATTAGTAGCATTGTCAGGTGAAGGCCATGGCGTGGATAAGAACACTATGTTTTCTGCCGTGCCGCCGATGTTCCCTTCGCCCCCACCGCCTCCGGCACCATGGAAACCATGATTGGCTGCCACTATCTGATTTTGATTCATTTTGTATACGGCTTATTTAGATTAGTGTTTTTCTCCCTTGTTCCGGAGATGCTGGGGGAAACCTAACAGAAAAGAAGGCGTCAGGTTTTTATCTTTGTTTCTCCCATTGTTGTATACTTGTATAATCCCCATGTTATGTAACACTATTGCTATTTTGGTATGAACCTAGTAATTAATACTATCTTTCCTCGTGGATTTGTGGGAGTTAAAAAAAAAAAAAAA]

[-] EMBL CA759902             [AATTTTGCAAGAACTCAAATCGAATACATCTTAGGAAAAAATCCTTTGAAGATGAGCTATGTGGTTGGTTACGGAAACCGTTACCCTAAACGTGTTCATTATCGGGGTGCCTCGATCCCAAAGAATGGTGTCCACTACGGTTGCAAAGGAGGTTGGAAGTGGAGAGAAACCAAGAAACCAAAACCCTAACATTATTGTCGGAGCGATGGTAGCTGGCCCTGATCGCCACGACGGCTTCAAGGATGTTCGCAAGAATTACAACTACACGGAAGCAACTCTAGCTGGCAATGCCGGTCTAGTTGCAGCATTAGTAGCATTGTCAGGTGAAGGCCATGGCGTGGATAAGAACACTATGTTTTCTGCCGTGCCGCCGATGTTCCCTTCGCCCCCACCGCCTCCGGCACCATGGAAACCATGATTGGCTGCCACTATCTGATTTTGATTCATTTTGTATACGGCTTATTTAGATTAGTGTTTTTCTCCCTTGTTCCGGAGATGCTGGGGGAAACCTAACAGAAAAGAAGGCGTCAGGTTTTTATCTTTGTTTCTCCCATTGTTGTATACTTGTATAATCCCCATGTTATGTAACACTATTGCTATTTTGGTATGAACCTAGTAATTAATACTATCTTTCCTCGTGGATTTGTGGGAGTTAAAAAAAAAAAAAAA]




>consensus_12171#1
AATTTTGCAAGAACTCAAATCGAATACATCTTAGGAAAAAATCCTTTGAAGATGAGCTAT
GTGGTTGGTTACGGAAACCGTTACCCTAAACGTGTTCATTATCGGGGTGCCTCGATCCCA
AAGAATGGTGTCCACTACGGTTGCAAAGGAGGTTGGAAGTGGAGAGAAACCAAGAAACCA
AAACCCTAACATTATTGTCGGAGCGATGGTAGCTGGCCCTGATCGCCACGACGGCTTCAA
GGATGTTCGCAAGAATTACAACTACACGGAAGCAACTCTAGCTGGCAATGCCGGTCTAGT
TGCAGCATTAGTAGCATTGTCAGGTGAAGGCCATGGCGTGGATAAGAACACTATGTTTTC
TGCCGTGCCGCCGATGTTCCCTTCGCCCCCACCGCCTCCGGCACCATGGAAACCATGATT
GGCTGCCACTATCTGATTTTGATTCATTTTGTATACGGCTTATTTAGATTAGTGTTTTTC
TCCCTTGTTCCGGAGATGCTGGGGGAAACCTAACAGAAAAGAAGGCGTCAGGTTTTTATC
TTTGTTTCTCCCATTGTTGTATACTTGTATAATCCCCATGTTATGTAACACTATTGCTAT
TTTGGTATGAACCTAGTAATTAATACTATCTTTCCTCGTGGATTTGTGGGAGTTAAAAAA
AAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12171#0      GNGNCAACAGTAGTAGTAGTACCTGATTATCCATCCCTAACAAATCCCACTTCCCCACAC 60
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      ACGCCAAAAGCCTCTCCTCTCCTTTCCTCCTCCTCCAGTCCTCCTCACTGTCCGTCCCAA 120
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      GAACCACTCGGTGCAGCCGCCGCCGCCGCCGCAGCCAGTGCCATTGCAAGAATCGCGAGG 180
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      GGGTATTGAGGTTGGGCGGCGAGATGAGCATGTACGGGAGGGACCCGTGGGGCGGGCCGC 240
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      TGGAGATATGCCACGACTCGGCGACGGACGACGACCGGAGCCGGAACCTGGACCTGGACA 300
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      GGGGGGCGCTGTCGCGGACGCTGGACGAGACGCAGCAGAGCTGGCTGCTGGCCGGGCCGG 360
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      GGGACCAGGGCCGGAAGAAGAAGAAGTACGTCGACCTCGGCTGCCTCGTCGTCAGCCGCA 420
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      AGCTCTTCGTGTGGACGGTCGGGGTGCTCCTCGCCGCCGCCGACTTCGCCGGGCTCGTCG 480
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      CCGGCATCGCCAAGGCCATCCCCAGGCACCACCGCCCGCCGCCGCCGCCGGACGACTTCA 540
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      CCGTCGCGCTGCGCAAGGCGCTCATGTTCTTCAATGCCCAGAAATCTGGAAAGCTTCCGA 600
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      AGAACAACAATGTGCATTGGCGTGGTAACTCGTGCATGAAGGACGGACTCTCGGATCCGG 660
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      CAGTCGGGCGCAGCCTCGTCGGAGGGTACTACGACGCCGGCGACGCCGTCAAGTTCAACT 720
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      TTCCAGCTGCCTTCTCCATGACCCTCCTCAGCTGGAGCGTCATCGAGTACAGTGCTATAT 780
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      ACGAGGCAGTTGGGGAACTTGGCCATATCCGTGATACCATCAAGTGGGGGGGCGCGAACT 840
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      TCTTGAAGACCTTCAACTCAACGGCGGATACCATTGATCGTGTCGTTATGCAGGTGGGGA 900
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      GCGGTGCAACATCACCCGGTTCGACTCAACCGAACGATCACTATTGTTGGATGAGACCAG 960
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      AGGACATTGACTACCCTCGCCCAGTAGTTGAGTGCCATGCTTGTTCAGATCTTGCGGCTG 1020
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      AGATGGCTGCATCATTGGCAGCAGCATCAATTGTGTTCAAGGACAATAAGGCGTACTCGC 1080
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      AGAAGCTGGTACATGGTGCTACCACCCTCTTCAAGTTTGCAAGGCAAAACCGTGGAAGAT 1140
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      ATAGTGCAGGTGGTTCCGATGCTGCAAAATTCTATAACTCAACCAGCTACTGGGATGAGT 1200
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      TTGTATGGGGTGGTTCATGGATGTATCTCGCAACCGGCAATTCATCGTACCTGCAGTTGG 1260
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      CAACACACCCCAAGCTTGCAAAGCATGCTGGTGCTTACTGGGGTGGTCCAGACTACGGTG 1320
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      TATTCAGCTGGGACAATAAGCTTACTGGTGCACAGGTTCTTTTGAGCCGGTTAAGGCTCT 1380
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      TCTTAAGTCCTGGTTATCCATATGAAGAGATCCTCAGGACATTCCACAATCAAACAAGCA 1440
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      TTATTATGTGCTCTTATCTTCCAATTTTCAAGTCTTTCAACAGGACAAAAGGTGGTTTGA 1500
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      TCCAGTTGAATCACGGGAGGCCACAACCTCTTCAGTATGTGGTGAACGCTGCATTCCTTG 1560
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      CTTCTTTGTACGGTGACTATCTTGAGGCTGCAGATACCCCTGGCTGGTATTGTGGGCCCC 1620
consensus_12171#1      ------------------------------------------------------------
                                                                                   

consensus_12171#0      ATTTCTACCCAATTGAAACTCTGCGCAATTTTGCAAGAACTCAAATCGAATACATCTTAG 1680
consensus_12171#1      --------------------------AATTTTGCAAGAACTCAAATCGAATACATCTTAG 34
                                                 **********************************

consensus_12171#0      GAAAAAATCCTTTGAAGATGAGCTATGTGGTTGGTTACGGAAACCGTTACCCTAAACGTG 1740
consensus_12171#1      GAAAAAATCCTTTGAAGATGAGCTATGTGGTTGGTTACGGAAACCGTTACCCTAAACGTG 94
                       ************************************************************

consensus_12171#0      TTCATCATCGGGGTGCCTCGATCCCAAAGAATGGTGTCCACTACGGTTGCAAAGGAGGTT 1800
consensus_12171#1      TTCATTATCGGGGTGCCTCGATCCCAAAGAATGGTGTCCACTACGGTTGCAAAGGAGGTT 154
                       ***** ******************************************************

consensus_12171#0      GGAAGTGGAGAGAAACCAAGAAACCAAA-CCCTAACATCATCGTCGGAGCGATGGTAGCT 1859
consensus_12171#1      GGAAGTGGAGAGAAACCAAGAAACCAAAACCCTAACATTATTGTCGGAGCGATGGTAGCT 214
                       **************************** ********* ** ******************

consensus_12171#0      GGCCCTGATCGCCACGACGGCTTCAAGGATGTTCGCAAGAATTACAACTACACGGAAGCA 1919
consensus_12171#1      GGCCCTGATCGCCACGACGGCTTCAAGGATGTTCGCAAGAATTACAACTACACGGAAGCA 274
                       ************************************************************

consensus_12171#0      ACTCTAGCTGGCAATGCCGGTCTAGTTGCAGCATTAGTAGCATTGTCAGGTGAAGGCCAT 1979
consensus_12171#1      ACTCTAGCTGGCAATGCCGGTCTAGTTGCAGCATTAGTAGCATTGTCAGGTGAAGGCCAT 334
                       ************************************************************

consensus_12171#0      GGCGTGGATAAGAACACTATGTTTTCTGCCGTGCCGCCGATGTTCCCTTCGCCCCCACCG 2039
consensus_12171#1      GGCGTGGATAAGAACACTATGTTTTCTGCCGTGCCGCCGATGTTCCCTTCGCCCCCACCG 394
                       ************************************************************

consensus_12171#0      CCTCCGGCACCATGGAAACCATGATTGGCTGCCACTATCTGATTCTGATTCATTTTGTAT 2099
consensus_12171#1      CCTCCGGCACCATGGAAACCATGATTGGCTGCCACTATCTGATTTTGATTCATTTTGTAT 454
                       ******************************************** ***************

consensus_12171#0      ACGGCTTATTTAGATTAGTGTTTTTCTCCCTTGTTCTGGAAATGCTGGGGGAAACCTAAC 2159
consensus_12171#1      ACGGCTTATTTAGATTAGTGTTTTTCTCCCTTGTTCCGGAGATGCTGGGGGAAACCTAAC 514
                       ************************************ *** *******************

consensus_12171#0      AGAAAAGAAGGCGTCAGGTTTTTATCTTTGTTTCTCCCATTGTTGTATACTTGTATAATC 2219
consensus_12171#1      AGAAAAGAAGGCGTCAGGTTTTTATCTTTGTTTCTCCCATTGTTGTATACTTGTATAATC 574
                       ************************************************************

consensus_12171#0      CCCATGTTATGTAACACTATTGCTGTTCTGGTATGAACCTAGTAATTAATACTATAAAAA 2279
consensus_12171#1      CCCATGTTATGTAACACTATTGCTATTTTGGTATGAACCTAGTAATTAATACTATCTTTC 634
                       ************************ ** ***************************     

consensus_12171#0      AAAATGGATTTGTGGGAGTTAGATTTTTAAAAA-- 2312
consensus_12171#1      CTCGTGGATTTGTGGGAGTTAAAAAAAAAAAAAAA 669
                           ***************** *     *****