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Oryza sativa
cluster # 12183 cluster # 12183       Sequences # 10       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12183#0 length = 2330 sequences # 8  
 consensus_12183#1 length = 606 sequences # 1  
consensus_12183#2 length = 311 sequences # 1  
consensusID : consensus_12183#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2330
fasta sequence 
                              [TTTAGTGCTGTTGAGCGTCCAAGGGAGCGTGAAGACTTATTTGAGAGCTATCTTATGGAACTACAGAAGAAGGAAAGAGCCAGGGCTGCTGAAGAGCACAAAAGGCACATAGCAGAATATAGAGCTTTTCTCGAGTCATGTGAATTCATAAAGACAAGTACCCAGTGGAGAAAAGTTCAAGAACGTCTTGAGGATGATGAACGCTGTTCCCGACTTGAAAAGATCGATCGACTGGAGATTTTCCAAGAGTATATAAGGGATCTGGAGAAAGAAGAGGAAGAGCACAAGCGGATACATAAGGAACAAGTAAGGAGGCAAGAGCGCAAAAATCGTGATGAATTTCGCAAGATGTTGGAAGAACATGTAGCTGAAGGAATGCTTACTGCAAAAACTCGTTGGCGTGATTACTGTGCCCAGGTTAAAGATTCCTCTGTGTACTTGGCTGTGGCCTCGAACATAAGTGGTTCAATGCCAAAAGATCTGTTTGAAGATGTAATGGAGGAGCTTGAGAAACAGTATCAAGATGACAAAGCCCGAATTAAAGAAGCAGTGAAGTCTGGAAAGATTCCTATGACGACTTCATGGACACTAGAGGATTTCGAAACTGCTGTTACGGAGGATGATACTTTGAAAGGAATAACAAACATAAACATGAAGCTTATTTTTGATGATCA-AGTTGAAAGGCTCA-GGGAAAAGGAGGTAAAGGAAGCAAAGAAGCGCCAGCGTCTGGGTGAAAATTTCTCAGATCTTTTGTACTCAATCAAGGAAATATCAGCTTCTTCAACATGGGATGATTCTAAAGCACTATTCGAAGATAGCCAAGAGTACAAGGCATTGGACAGCGAAACATACTCTAGAGAGCTTTTCGAAGAGTGCGTTGTCCACTTGAAAGAAAGGTTAAAAGAGAAAGAGCGCTTGAGGGAGGAAGAAAAGGCAAGAAAAGAGAAGGAACGTGAAGAGAAAGAACGGAGGAAAGAGAAAGAAAAGAAGGAGAAAGAACGCAAAGAAAAAGAAAGAGA-CAAGGAGAAAGAAAGAGAAAAGGACAAAGGAAAGGATCGGTCGAGGAAAGATGAGATGGATATTGATGCTGTTGATGCAGATAGCCATGGCTCAAAAGACAAGAAAAGAGAAAAGGACAAGGAAAAGAAGCATAAGAGACACCACCATGACACTGCAGATGATGTGAGCTCTGAAAGGGATGAGAAGGATGACTCTAAAAAGTCTCGTAGACATAGCAGTGATCGCAAGAAATCAAGGAAGCATACCCATGCTTCGGACTCTGATAGTGAAAATCGGCACAAAAGACACAAAAAGGATCGAGATAGCTCCCGCAGAAATGGCACACGTGATGACCTTGAAGATGGTGAACTTGGAGAAGATGGGGAGATTCATTAGTCATTCGTTTCTCCGCTGAGATTTATCACAATACAGTCCCCCCTCCTGTTTTGGACATATGAAATGGTGCATTTTGTTGGCAACTATAAATGCTTTCCTCCAGAGAAGGACAATTTCTTTATGGGGATTATCTTCTTGTCTTGATCTGGCTTGTTGGAAATGGACAATAATAGCCTTCATTGTTTGGATGCTCACAATGTAGTCATGAAGGTTCTTGTACTGCAAAACTTTTGTTGCCTTTAGTTATCTTCTTATCCCCTTCCCTTTGTCAGTCTGGGTATAGGTTGTATTTGTTATAGGAGGGGGAGGGCTGTAAAGTGTTTAGTGGCTGAAAAAGATCCTTTAGAAGGTTAGGTGCGAAATGCATGCAATGCTGAGGTTTATAACTGA-ATTTCGTTGAATCATCTGTGCCCAGTGGCCACTGTATCCTGATTAGAGCTCTTGATCTACAAGACTTGTGTTTCTCCAAAAATCTCCCGTCTCCTGCATTATGTTGCCATTGAGCGGCACCTGGCTGTTGCTGTAACACCGAGGCCTGTCTGTGGGTGCATGGAATGCAAAGCACACTTGGTTGGAAGCATGGCAAGAGGCAAAGCCTGCCCAACTCACTCATTGGTCGTGCTGCTGCAGCAGTTTCATACTCGTTTTGACGTGGTTTTCACTTTGGAGTTGTTTAACATCTTGTTATTTACTATGCCATCTAACATAGTTTTCGTATGGTAGCAGTTTTGTAATAGTTTGCTGCTATTTATGGTGCTTTATAGATAGATGTACTTGCAGCTGACGCTGTTGATATTCTCATGAATACATTGATTCTGTAGGCTATGTTTGTTGGATGGCTGATACTGAAACGATAACATGATCCATCCTTGTATTATGGCTGTAGATTATTAACTTTTTTTGTTGGAAGGGAACAATTACTAACTAATCTTCAC]

[+] EMBL AK105807             [TTTAGTGCTGTTGAGCGTCCAAGGGAGCGTGAAGACTTATTTGAGAGCTATCTTATGGAACTACAGAAGAAGGAAAGAGCCAGGGCTGCTGAAGAGCACAAAAGGCACATAGCAGAATATAGAGCTTTTCTCGAGTCATGTGAATTCATAAAGACAAGTACCCAGTGGAGAAAAGTTCAAGAACGTCTTGAGGATGATGAACGCTGTTCCCGACTTGAAAAGATCGATCGACTGGAGATTTTCCAAGAGTATATAAGGGATCTGGAGAAAGAAGAGGAAGAGCACAAGCGGATACATAAGGAACAAGTAAGGAGGCAAGAGCGCAAAAATCGTGATGAATTTCGCAAGATGTTGGAAGAACATGTAGCTGAAGGAATGCTTACTGCAAGAACTCGTTGGCGTGATTACTGTGCCCAGGTTAAAGATTCCTCTGTGTACTTGGCTGTGGCCTCGAACATAAGTGGTTCAATGCCAAAAGATCTGTTTGAAGATGTAATGGAGGAGCTTGAGAAACAGTATCAAGATGACAAAGCCCGAATTAAAGAAGCAGTGAAGTCTGGAAAGATTCCTATGACGACTTCATGGACACTAGAGGATTTCGAAACTGCTGTTACGGAGGATGATACTTTGAAAGGAATAACAAACATAAACATGAAGCTTATTTTTGATGATCA AGTTGAAAGGCTCA GGGAAAAGGAGGTAAAGGAAGCAAAGAAGCGCCAGCGTCTGGGTGAAAATTTCTCAGATCTTTTGTACTCAATCAAGGAAATATCAGCTTCTTCAACATGGGATGATTCTAAAGCACTATTCGAAGATAGCCAAGAGTACAAGGCATTGGACAGCGAAACATACTCTAGAGAGCTTTTCGAAGAGTGCGTTGTCCACTTGAAAGAAAGGTTAAAAGAGAAAGAGCGCTTGAGGGAGGAAGAAAAGGCAAGAAAAGAGAAGGAACGTGAAGAGAAAGAACGGAGGAAAGAGAAAGAAAAGAAGGAGAAAGAACGCAAAGAAAAAGAAAGAGA CAAGGAGAAAGAAAGAGAAAAGGACAAAGGAAAGGATCGGTCGAGGAAAGATGAGATGGATATTGATGCTGTTGATGCAGATAGCCATGGCTCAAAAGACAAGAAAAGAGAAAAGGACAAGGAAAAGAAGCATAAGAGACACCACCATGACACTGCAGATGATGTGAGCTCTGAAAGGGATGAGAAGGATGACTCTAAAAAGTCTCGTAGACATAGCAGTGATCGCAAGAAATCAAGGAAGCATACCCATGCTTCGGACTCTGATAGTGAAAATCGGCACAAAAGACACAAAAAGGATCGAGATAGCTCCCGCAGAAATGGCACACGTGATGACCTTGAAGATGGTGAACTTGGAGAAGATGGGGAGATTCATTAGTCATTCGTTTCTCCGCTGAGATTTATCACAATACAGTCCCCCCTCCTGTTTTGGACATATGAAATGGTGCATTTTGTTGGCAACTATAAATGCTTTCCTCCAGAGAAGGACAATTTCTTTATGGGGATTATCTTCTTGTCTTGATCTGGCTTGTTGGAAATGGACAATAATAGCCTTCATTGTTTGGATGCTCACAATGTAGTCATGAAGGTTCTTGTACTGCAAAACTTTTGTTGCCTTTAGTTATCTTCTTATCCCCTTCCCTTTGTCAGTCTGGGTATAGGTTGTATTTGCTATAGGAGGGGGAGGGCTGTAAAGTGTTTAGTGGCTGAAAAAGATCCTTTAGAAGGTTAGGTGCGAAATGCATGCAATGCTGAGGTTTATAACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK070288             [                                                                                                                                                   ATAAAGACAAGTACCCAGTGGAGAAAAGTTCAAGAACGTCTTGAGGATGATGAACGCTGTTCCCGACTTGAAAAGATCGATCGACTGGAGATTTTCCAAGAGTATATAAGGGATCTGGAGAAAGAAGAGGAAGAGCACAAGCGGATACATAAGGAACAAGTAAGGAGGCAAGAGCGCAAAAATCGTGATGAATTTCGCAAGATGTTGGAAGAACATGTAGCTGAAGGAATGCTTACTGCAAAAACTCGTTGGCGTGATTACTGTGCCCAGGTTAAAGATTCCTCTGTGTACTTGGCTGTGGCCTCGAACATAAGTGGTTCAATGCCAAAAGATCTGTTTGAAGATGTAATGGAGGAGCTTGAGAAACAGTATCAAGATGACAAAGCCCGAATTAAAGAAGCAGTGAAGTCTGGAAAGATTCCTATGACGACTTCATGGACACTAGAGGATTTCGAAACTGCTGTTACGGAGGATGATACTTTGAAAGGAATAACAAACATAAACATGAAGCTTATTTTTGATGATCA AGTTGAAAGGCTCA GGGAAAAGGAGGTAAAGGAAGCAAAGAAGCGCCAGCGTCTGGGTGAAAATTTCTCAGATCTTTTGTACTCAATCAAGGAAATATCAGCTTCTTCAACATGGGATGATTCTAAAGCACTATTCGAAGATAGCCAAGAGTACAAGGCATTGGACAGCGAAACATACTCTAGAGAGCTTTTCGAAGAGTGCGTTGTCCACTTGAAAGAAAGGTTAAAAGAGAAAGAGCGCTTGAGGGAGGAAGAAAAGGCAAGAAAAGAGAAGGAACGTGAAGAGAAAGGACGGAGGAAAGAGAAAGAAAAGAAGGAGAAAGAACGCAAAGAAAAAGAAAGAGA CAAGGAGAAAGAAAGAGAAAAGGACAAAGGAAAGGATCGGTCGAGGAAAGATGAGATGGATATTGATGCTGTTGATGCAGATAGCCATGGCTCAAAAGACAAGAAAAGAGAAAAGGACAAGGAAAAGAAGCATAAGAGACACCACCATGACACTGCAGATGATGTGAGCTCTGAAAGGGATGAGAAGGATGACTCTAAAAAGTCTCGTAGACATAGCAGTGATCGCAAGAAATCAAGGAAGCATACCCATGCTTCGGACTCTGATAGTGAAAATCGGCACAAAAGACACAAAAAGGATCGAGATAGCTCCCGCAGAAATGGCACACGTGATGACCTTGAAGATGGTGAACTTGGAGAAGATGGGGAGATTCATTAGTCATTCGTTTCTCCGCTGAGATTTATCACAATACAGTCCCCCCTCCTGTTTTGGACATATGAAATGGTGCATTTTGTTGGCAACTATAAATGCTTTCCTCCAGAGAAGGACAATTTCTTTATGGGGATTATCTTCTTGTCTTGATCTGGCTTGTTGGAAATGGACAATAATAGCCTTCATTGTTTGGATGCTCACAATGTAGTCATGAAGGTTCTTGTACTGCAAAACTTTTGTTGCCTTTAGTTATCTTCTTATCCCCTTCCCTTTGTCAGTCTGGGTATAGGTTGTATTTGTTATAGGAGGGGGAGGGCTGTAAAGTGTTTAGTGGCTGAAAAAGATCCTTTAGAAGGTTAGGTGCGAAATGCATGCAATGCTGAGGTTTATAACTGA ATTTCGTTGAATCATCTGTGCCCAGTGGCCACTGTATCCTGATTAGAGCTCTTGATCTACAAGACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA764368             [                                                                                                                                                                                                                                                                                   GGACGAG ACAAGGGGATACATAAGGAACAAGTAAGGAGGCAAGAGCGCAAAAATCGTGATGAATTTCGCAAGATGTTGGAAGAACATGTAGCTGAAGGAATGCTTACTGCAAAAACTCGTTGGCGTGATTACTGTGCCCAGGTTAAAGATTCCTCTGTGTACTTGGCTGTGGCCTCGAACATAAGTGGTTCAATGCCAAAAGATCTGTTTGAAGATGTAATGGAGGAGCTTGAGAAACAGTATCAAGATGACAAAGCCCGAATTAAAGAAGCAGTGAAGTCTGGAAAGATTCCTATGACGACTTCATGGACACTTGAGGATTTCGAAACTGCTGTTACGGAGGATGATACTTTGAAAGGAATAACAAACATAAACATGAAGCTTATTTTTGATGATCA AGTTGAAAGGCTCA GGGAAAAGGAGGTAAAGGAAGCAAAGAAGCGCCAGCGTCTGGGTGAAAATTTCTCAGATCTTTTGTACTCAATCAAGGAAATATCAGCTTCTTCAACATGGGATGATTCTAAAGCACTATTCGAAGATAGCCAAGAGTACAAGGCATTGGACAGCGAAACATACTCTAGAGAGCTTTTCGAAGAGTGCGTTGTCCACTTGAAAGAAAGGTTAAAAGAGAAAGAGCGCTTGAGGGAGGAAGAAAAGGCAAGAAAAGAGAAGGAACGTGAAGAGAAAGAACGGAGGAAAGAG AAG AAAGAAGGAG AAGAACGCAAAGAAAAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB096495             [                                                                                                                                                                                                                                                                                                           GGAACAAGTAAGGAGGCAAGAGCGCAAAAATCGTGATGAATTTCGCAAGATGTTGGAAGAACATGTAGCTGAAGGAATGCTTACTGCAAAAACTCGTTGGCGTGATTACTGTGCCCAGGTTAAAGATTCCTCTGTGTACTTGGCTGTGGCCTCGAACATAAGTGGTTCAATGCCAAAAGATCTGTTTGAAGATGTAATGGAGGAGCTTGAGAAACAGTATCAAGATGACAAAGCCCGAATTAAAGAAGCAGTGAAGTCTGGAAAGATTCCTATGACGACTTCATGGACACTAGAGGATTTCGAAACTGCTGTTACGGAGGATGATACTTTGAAAGGAATAACAAACATAAACATGAAGCTTATTTTTGATGATCA AGTTGAAAGGCTCA GGGAAAAGGAGGTAAAGGAAGCAAAGAAGCGCCAGCGTCTGGGTGAAAATTTCTCAGATCTTTTGTACTCAATCAAGGAAATATCAGCTTCTTCAACATGGGATGATTCTAAAGCACTATTCGAAGATAGCCAAGAGTACAAGGCATTGGACAGCGAAACATACTCTAGAGAGCTTTTCGAAGAGTGCGTTGTCCACTTGAAAGAAAGGTT AAAGAGAAAGAGCGCTTGAGGGAGGAAGAAAAGGCCAG AAAGAGAAGG ACGTGAAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI809279             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAAAGATTCCTATGACGACTTCATGGACACTAGAGGATTTCGAAACTGCTGTTACGGAGGATGATACTTTGAAAGGAATAACACAC T AACATGAAGCTTATTTTTGATGATCACAGTTGAAAGGCTCACGGGAAAAGGAGGTAAAGGAAGC AAGAAGCGCCAGCGTCTGGGTGAAAATTTCTCAGATCTTTTGTACTC ATCAAGGAAATATCAGCTTCTTC ACATGGGATGATTCTAAAGCACTATTCGAAGATAGCCCAGAGTACCAGGCATTGGACAGCGAAACATACTCTAGAGAGCTTTTCGAAGAGTGCGTTGTCCACTTGAAAGAAAGGTTAAAAGAGAAAGAGCGCTTGAGGGAGGAAGAAAAGGCCAGAAAAGAGAAGGAACGTGAAGAGAAAGAACGGAGGAAAGAGAAAGAAAAGAAGGAGAAAGAACGCCAAGAAAAAGAAAGAGACCCAGGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BI813805             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TAGTCATTCGTTTCTCCGCTGAGATTTATCACAATACAGTCCCCCCTCCTGTTTTGGACATATGAAATGGTGCATTTTGTT GCAACTATAAATGCTTTCCTCCAGAGAAGGACAATTTCTTTATGGGGATTATCTTCTTGTCTTGATCTGGCTTGTTGGAAATGGACAATAATAGCCTTCATTGTTTGGATGCTCACAATGTAGTCATGAAGGTTCTTGTACTGCAAAACTTTTGTTGCCTTTAGCTATCTTCTTATCCCCTTCCCTTTGTCAGTCTGGGTATA GTTGTATTTGTTATAGGAGGGGGAGCTCTGTAAAGTGTTTAGTGGCTGAAAAAGATCCTTTAGAAGGTTAGGTGTGAAATGCATGC ATGCTGAGGTTTATAACTGACATTTCGTTGAATCATCTGTGCCCAGTGGCCACTGTATCCTGATTAGAGCTCTTGATCTACAAGACTTGTGTTTCTCCAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB633430             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCTTCTTGTCTTGATCTGGCTTGTTGGAAATGGACAATAATAGCCTTCATTGTTTGGATGCTCACAATGTAGTCATGAAGGTTCTTGTACTGCAAAACTTTTGTTGCCTTTAGCTATCTTCTTATCCCCTTCCCTTTGTCAGTCTGGGTATAGGTTGTATTTGTTATAGGAGGGGGAGGGCTGTAAAGTGTTTAGTGGCTGAAAAAGATCCTTTAGAAGGTTAGGTGCGAAATGCATGCAATGCTGAGGTTTATAACTGA ATTTCGTTGAATCATCTGTGCCCAGTGGCCACTGTATCCTGATTAGAGCTCTTGATCTACAAGACTTGTGTTTCTCCATGGATCTCCCGTCTCCTGCATTATGTTGCCATTGAGCGGCACCTGGCTGTTGCTGTAACACCGAGGCCTGTCTGTGGGTGCATGGAATGCAAAGCACACTTGGTTGGAAGCATGGCAAGAGGCAAAGCCTGCCCAACTCACTCATTGGTCGTGCTGCTGCAGCAGTTTCATACTCGTTTTGACGTGGTTTTCACTTTGGAGTTGTTTAACATCTTGTTATTTACTATGCCATCTAACATAGTTTTCGTATGGTAGCAGTTTTGTAATAGTTTGCTGCTATTTATGGTGCTTTATAGATAGATGTACTTGCAGCTGACGCTGTTGATATTCTCATGAATACATTGATTCTGTAGGCTATGTTTGTTGGATGGCTGATACTGAAACGATAACATGATCCATCCTTGTATTATGGCTGTAGATTATTAACTTTTTTTGTTGGAAGGGAACAATTACTAACTAATCTTCAC]
[-] EMBL D42625               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ggTGGAGCAGTTTCATACTGGTTTTGACGTGGTTTTGACTTTGGAGTTGTCTAACCTCTTGTTATTTACTATGCCATCTAACATAGTTTTGGTATGGTAGCAGTTTTGTAATAG                                                                                                                                                                                                      ]




>consensus_12183#0
TTTAGTGCTGTTGAGCGTCCAAGGGAGCGTGAAGACTTATTTGAGAGCTATCTTATGGAA
CTACAGAAGAAGGAAAGAGCCAGGGCTGCTGAAGAGCACAAAAGGCACATAGCAGAATAT
AGAGCTTTTCTCGAGTCATGTGAATTCATAAAGACAAGTACCCAGTGGAGAAAAGTTCAA
GAACGTCTTGAGGATGATGAACGCTGTTCCCGACTTGAAAAGATCGATCGACTGGAGATT
TTCCAAGAGTATATAAGGGATCTGGAGAAAGAAGAGGAAGAGCACAAGCGGATACATAAG
GAACAAGTAAGGAGGCAAGAGCGCAAAAATCGTGATGAATTTCGCAAGATGTTGGAAGAA
CATGTAGCTGAAGGAATGCTTACTGCAAAAACTCGTTGGCGTGATTACTGTGCCCAGGTT
AAAGATTCCTCTGTGTACTTGGCTGTGGCCTCGAACATAAGTGGTTCAATGCCAAAAGAT
CTGTTTGAAGATGTAATGGAGGAGCTTGAGAAACAGTATCAAGATGACAAAGCCCGAATT
AAAGAAGCAGTGAAGTCTGGAAAGATTCCTATGACGACTTCATGGACACTAGAGGATTTC
GAAACTGCTGTTACGGAGGATGATACTTTGAAAGGAATAACAAACATAAACATGAAGCTT
ATTTTTGATGATCAAGTTGAAAGGCTCAGGGAAAAGGAGGTAAAGGAAGCAAAGAAGCGC
CAGCGTCTGGGTGAAAATTTCTCAGATCTTTTGTACTCAATCAAGGAAATATCAGCTTCT
TCAACATGGGATGATTCTAAAGCACTATTCGAAGATAGCCAAGAGTACAAGGCATTGGAC
AGCGAAACATACTCTAGAGAGCTTTTCGAAGAGTGCGTTGTCCACTTGAAAGAAAGGTTA
AAAGAGAAAGAGCGCTTGAGGGAGGAAGAAAAGGCAAGAAAAGAGAAGGAACGTGAAGAG
AAAGAACGGAGGAAAGAGAAAGAAAAGAAGGAGAAAGAACGCAAAGAAAAAGAAAGAGAC
AAGGAGAAAGAAAGAGAAAAGGACAAAGGAAAGGATCGGTCGAGGAAAGATGAGATGGAT
ATTGATGCTGTTGATGCAGATAGCCATGGCTCAAAAGACAAGAAAAGAGAAAAGGACAAG
GAAAAGAAGCATAAGAGACACCACCATGACACTGCAGATGATGTGAGCTCTGAAAGGGAT
GAGAAGGATGACTCTAAAAAGTCTCGTAGACATAGCAGTGATCGCAAGAAATCAAGGAAG
CATACCCATGCTTCGGACTCTGATAGTGAAAATCGGCACAAAAGACACAAAAAGGATCGA
GATAGCTCCCGCAGAAATGGCACACGTGATGACCTTGAAGATGGTGAACTTGGAGAAGAT
GGGGAGATTCATTAGTCATTCGTTTCTCCGCTGAGATTTATCACAATACAGTCCCCCCTC
CTGTTTTGGACATATGAAATGGTGCATTTTGTTGGCAACTATAAATGCTTTCCTCCAGAG
AAGGACAATTTCTTTATGGGGATTATCTTCTTGTCTTGATCTGGCTTGTTGGAAATGGAC
AATAATAGCCTTCATTGTTTGGATGCTCACAATGTAGTCATGAAGGTTCTTGTACTGCAA
AACTTTTGTTGCCTTTAGTTATCTTCTTATCCCCTTCCCTTTGTCAGTCTGGGTATAGGT
TGTATTTGTTATAGGAGGGGGAGGGCTGTAAAGTGTTTAGTGGCTGAAAAAGATCCTTTA
GAAGGTTAGGTGCGAAATGCATGCAATGCTGAGGTTTATAACTGAATTTCGTTGAATCAT
CTGTGCCCAGTGGCCACTGTATCCTGATTAGAGCTCTTGATCTACAAGACTTGTGTTTCT
CCAAAAATCTCCCGTCTCCTGCATTATGTTGCCATTGAGCGGCACCTGGCTGTTGCTGTA
ACACCGAGGCCTGTCTGTGGGTGCATGGAATGCAAAGCACACTTGGTTGGAAGCATGGCA
AGAGGCAAAGCCTGCCCAACTCACTCATTGGTCGTGCTGCTGCAGCAGTTTCATACTCGT
TTTGACGTGGTTTTCACTTTGGAGTTGTTTAACATCTTGTTATTTACTATGCCATCTAAC
ATAGTTTTCGTATGGTAGCAGTTTTGTAATAGTTTGCTGCTATTTATGGTGCTTTATAGA
TAGATGTACTTGCAGCTGACGCTGTTGATATTCTCATGAATACATTGATTCTGTAGGCTA
TGTTTGTTGGATGGCTGATACTGAAACGATAACATGATCCATCCTTGTATTATGGCTGTA
GATTATTAACTTTTTTTGTTGGAAGGGAACAATTACTAACTAATCTTCAC

consensusID : consensus_12183#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence 
                              [AGTTATCTTCTTATCCCCTTCCCTTTGTCAGTCTGGGTATAGGTTGTATTTGTTATAGGAGGGGGAGGGCTGTAAAGTGTTTAGTGGCTGAAAAAGATCCTTTAGAAGGTTAGGTGCGAAATGCATGCAATGCTGAGGTTTATAACTGAATTTCGTTGAATCATCTGTGCCCAGTGGCCACTGTATCCTGATTAGAGCTCTTGATCTACTGAGACATTTGTGGTTTCTTCCAATGGGAATCTTTCCCCGGCCTTCCCTGGGAATTTTAATGGTTTGGCGCCCCCCTTTTTTAAAAAAAAGGGGCGGGGCCGCNCCGNCGNNCNNNTCTNNCCNCCCCCCCAGGGTCNCCCTCTTGCCCCCCCCTCCTTCTCCGTCTTTGCTCGCGCTTCGGGGGGTCGGCGGCGGCAGGGGCACTGACCCGGGCTCGCGCGGGGTGTGCGCCCCTCCACATTGCTACTGCTAGCCTCCCTGCTGGGTAGGGGTCTAGGGTGTGGGTTGCGCGTTCGCCTGCCCGCGTGTTGGCTGCCCGTCGCGCCTGGAGGCTCGGACCTCCCCTCCCTCCGAGCGGCGACTGTCCCCGTGCCGGTGTGGGGTCCCTCCCCCCGC]

[+] EMBL CA755982             [AGTTATCTTCTTATCCCCTTCCCTTTGTCAGTCTGGGTATAGGTTGTATTTGTTATAGGAGGGGGAGGGCTGTAAAGTGTTTAGTGGCTGAAAAAGATCCTTTAGAAGGTTAGGTGCGAAATGCATGCAATGCTGAGGTTTATAACTGAATTTCGTTGAATCATCTGTGCCCAGTGGCCACTGTATCCTGATTAGAGCTCTTGATCTACTGAGACATTTGTGGTTTCTTCCAATGGGAATCTTTCCCCGGCCTTCCCTGGGAATTTTAATGGTTTGGCGCCCCCCTTTTTTAAAAAAAAGGGGCGGGGCCGCNCCGNCGNNCNNNTCTNNCCNCCCCCCCAGGGTCNCCCTCTTGCCCCCCCCTCCTTCTCCGTCTTTGCTCGCGCTTCGGGGGGTCGGCGGCGGCAGGGGCACTGACCCGGGCTCGCGCGGGGTGTGCGCCCCTCCACATTGCTACTGCTAGCCTCCCTGCTGGGTAGGGGTCTAGGGTGTGGGTTGCGCGTTCGCCTGCCCGCGTGTTGGCTGCCCGTCGCGCCTGGAGGCTCGGACCTCCCCTCCCTCCGAGCGGCGACTGTCCCCGTGCCGGTGTGGGGTCCCTCCCCCCGC]




>consensus_12183#1
AGTTATCTTCTTATCCCCTTCCCTTTGTCAGTCTGGGTATAGGTTGTATTTGTTATAGGA
GGGGGAGGGCTGTAAAGTGTTTAGTGGCTGAAAAAGATCCTTTAGAAGGTTAGGTGCGAA
ATGCATGCAATGCTGAGGTTTATAACTGAATTTCGTTGAATCATCTGTGCCCAGTGGCCA
CTGTATCCTGATTAGAGCTCTTGATCTACTGAGACATTTGTGGTTTCTTCCAATGGGAAT
CTTTCCCCGGCCTTCCCTGGGAATTTTAATGGTTTGGCGCCCCCCTTTTTTAAAAAAAAG
GGGCGGGGCCGCNCCGNCGNNCNNNTCTNNCCNCCCCCCCAGGGTCNCCCTCTTGCCCCC
CCCTCCTTCTCCGTCTTTGCTCGCGCTTCGGGGGGTCGGCGGCGGCAGGGGCACTGACCC
GGGCTCGCGCGGGGTGTGCGCCCCTCCACATTGCTACTGCTAGCCTCCCTGCTGGGTAGG
GGTCTAGGGTGTGGGTTGCGCGTTCGCCTGCCCGCGTGTTGGCTGCCCGTCGCGCCTGGA
GGCTCGGACCTCCCCTCCCTCCGAGCGGCGACTGTCCCCGTGCCGGTGTGGGGTCCCTCC
CCCCGC

consensusID : consensus_12183#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence 
                              [AATGGAGGAGCCTGAGAAACAGTATCAAGATGACAAAGCCCGAATTAAAGAAGCAGNNAAGTCTGGAAAGATTCCCATGACGACNNCATGGACACTAGAGGATTTCGAAACTNCTGTTACGGAGGATGATACTTTGAAAGGAATAACAAACATAAACANGAAGCTTATTTTTTGATGNTCAAGTTGAAAGGCTCAGGGAAAAGGAGGTAAAGGAAGCAAAGAAGCGCCACGTCTTGGGTNAAANTTTCTCAGATCTTTTGTACTCAANCAAGGNNNNNTCAGCTTCTTCANCNTGGGTTGTTTTCTATAGT]

[+] EMBL OSC24251             [AATGGAGGAGCCTGAGAAACAGTATCAAGATGACAAAGCCCGAATTAAAGAAGCAGNNAAGTCTGGAAAGATTCCCATGACGACNNCATGGACACTAGAGGATTTCGAAACTNCTGTTACGGAGGATGATACTTTGAAAGGAATAACAAACATAAACANGAAGCTTATTTTTTGATGNTCAAGTTGAAAGGCTCAGGGAAAAGGAGGTAAAGGAAGCAAAGAAGCGCCACGTCTTGGGTNAAANTTTCTCAGATCTTTTGTACTCAANCAAGGNNNNNTCAGCTTCTTCANCNTGGGTTGTTTTCTATAGT]




>consensus_12183#2
AATGGAGGAGCCTGAGAAACAGTATCAAGATGACAAAGCCCGAATTAAAGAAGCAGNNAA
GTCTGGAAAGATTCCCATGACGACNNCATGGACACTAGAGGATTTCGAAACTNCTGTTAC
GGAGGATGATACTTTGAAAGGAATAACAAACATAAACANGAAGCTTATTTTTTGATGNTC
AAGTTGAAAGGCTCAGGGAAAAGGAGGTAAAGGAAGCAAAGAAGCGCCACGTCTTGGGTN
AAANTTTCTCAGATCTTTTGTACTCAANCAAGGNNNNNTCAGCTTCTTCANCNTGGGTTG
TTTTCTATAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12183#0      TTTAGTGCTGTTGAGCGTCCAAGGGAGCGTGAAGACTTATTTGAGAGCTATCTTATGGAA 60
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      CTACAGAAGAAGGAAAGAGCCAGGGCTGCTGAAGAGCACAAAAGGCACATAGCAGAATAT 120
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      AGAGCTTTTCTCGAGTCATGTGAATTCATAAAGACAAGTACCCAGTGGAGAAAAGTTCAA 180
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      GAACGTCTTGAGGATGATGAACGCTGTTCCCGACTTGAAAAGATCGATCGACTGGAGATT 240
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      TTCCAAGAGTATATAAGGGATCTGGAGAAAGAAGAGGAAGAGCACAAGCGGATACATAAG 300
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      GAACAAGTAAGGAGGCAAGAGCGCAAAAATCGTGATGAATTTCGCAAGATGTTGGAAGAA 360
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      CATGTAGCTGAAGGAATGCTTACTGCAAAAACTCGTTGGCGTGATTACTGTGCCCAGGTT 420
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      -----------------------------------------------------------A 1
                                                                                   

consensus_12183#0      AAAGATTCCTCTGTGTACTTGGCTGTGGCCTCGAACATAAGTGGTTCAATGCCAAAAGAT 480
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      GTTATCTTCTTATCCCCTTCCCTTTGTCAGTCTGGGTATAGGTTGTATTTGTTATAGGAG 61
                                                                                   

consensus_12183#0      CTGTTTGAAGATGTAATGGA-GGAGCTTGAGAAACAGTATCAAGATGACAAAGCCCGAAT 539
consensus_12183#2      --------------AATGGA-GGAGCCTGAGAAACAGTATCAAGATGACAAAGCCCGAAT 45
consensus_12183#1      GGGGAGGGCTGTAAAGTGTTTAGTGGCTGAAAAAGATCCTTTAGAAGGTTAGGTGCGAAA 121
                                     * **    * *  *** *** *   *  *** *   * *  **** 

consensus_12183#0      TAAA-GAAGCAGTGAAGTCTGGAA--AGATTCCTATGACGACTTCATGGACACTAGAGGA 596
consensus_12183#2      TAAA-GAAGCAGNNAAGTCTGGAA--AGATTCCCATGACGACNNCATGGACACTAGAGGA 102
consensus_12183#1      TGCATGCAATGCTGAGGTTTATAACTGAATTTCGTTGA----ATCATCTGTGCCCAGTGG 177
                       *  * * *      * ** *  **    *** *  ***      ***     *     * 

consensus_12183#0      TTTCGAAACTGCTGTTACGGAGGATGATACTTTGAAAGGAATAACAAACATAAACATGAA 656
consensus_12183#2      TTTCGAAACTNCTGTTACGGAGGATGATACTTTGAAAGGAATAACAAACATAAACANGAA 162
consensus_12183#1      CCACTGTATCCTGATTAGAGCTCTTGATCTACTGAGACATTTGTGGTTTCTTCCAATGGG 237
                          *   *      ***  *    ****    *** *    *        *    * *  

consensus_12183#0      GCTTATTTTT-GATGATC------AAGTTGAAAGGCTCAGGGAAAAGGAGGTAAAGGAAG 709
consensus_12183#2      GCTTATTTTTTGATGNTC------AAGTTGAAAGGCTCAGGGAAAAGGAGGTAAAGGAAG 216
consensus_12183#1      AATCTTTCCCCGGCCTTCCCTGGGAATTTTAATGGTTTGGCGCCCCCCTTTTTTAAAAAA 297
                         *  **    *    **      ** ** ** ** *  * *         *  *  ** 

consensus_12183#0      CAAAGA-AGCGCCAGCGTCTGGGTGAAAATTTCTCAGATCTTTTGTA-CTCAATCAAGGA 767
consensus_12183#2      CAAAGA-AGCGCCACGTCTTGGGTNAAANTTTCTCAGATCTTTTGTA-CTCAANCAAGGN 274
consensus_12183#1      AAGGGGCGGGGCCGCNCCGNCGNNCNNNTCTNNCCNCCCCCCCAGGGTCNCCCTCTTGCC 357
                        *  *   * ***        *        *   *    *    *   * *   *  *  

consensus_12183#0      AATATCAGCTTCTTCAACATGGGATGATT-CTAAAGCACTATTCGAAGATAGCCAAGAGT 826
consensus_12183#2      NNNNTCAGCTTCTTCANCNTGGGTTGTTTTCTATAGT----------------------- 311
consensus_12183#1      CCCCCCTCCTTCTCCGTCTTTGCTCGCGCTTCGGGGGGTCGGCGGCGGCAGGGGCACTGA 417
                            *  ***** *  * * *   *         *                        

consensus_12183#0      ACAAGGCATTGGACAGCGAAACATACTCTAGAGAGCTTTTCGAAGAGTGCGTTGTCCACT 886
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      CCCGGGCTCGCGCGGGGTGTGCGCCCCTCCACATTGCTACTGCTAGCCTCCCTGCTGGGT 477
                                                                                   

consensus_12183#0      TGAAAGAAAGGTTAAAAGAGAAAGAGCGCTTGAGGGAGGAAGAAAAGGCAAGAAAAGAGA 946
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      AGGGGTCTAGGGTGTGGGTTGCGCGTTCGCCTGCCCGCGTGTTGGCTGCCCGTCGCGCCT 537
                                                                                   

consensus_12183#0      AGGAACGTGAAGAGAAAGAACGGAGGAAAGAGAAAGAAAAGAAGGAGAAAGAACGCAAAG 1006
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      GGAGGCTCGGACCTCCCCTCCCTCCGAGCGGCGACTGTCCCCGTGCCGGTGTGGGGTCCC 597
                                                                                   

consensus_12183#0      AAAAAGAAAGAGACAAGGAGAAAGAAAGAGAAAAGGACAAAGGAAAGGATCGGTCGAGGA 1066
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      TCCCCCCGC--------------------------------------------------- 606
                                                                                   

consensus_12183#0      AAGATGAGATGGATATTGATGCTGTTGATGCAGATAGCCATGGCTCAAAAGACAAGAAAA 1126
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      GAGAAAAGGACAAGGAAAAGAAGCATAAGAGACACCACCATGACACTGCAGATGATGTGA 1186
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      GCTCTGAAAGGGATGAGAAGGATGACTCTAAAAAGTCTCGTAGACATAGCAGTGATCGCA 1246
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      AGAAATCAAGGAAGCATACCCATGCTTCGGACTCTGATAGTGAAAATCGGCACAAAAGAC 1306
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      ACAAAAAGGATCGAGATAGCTCCCGCAGAAATGGCACACGTGATGACCTTGAAGATGGTG 1366
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      AACTTGGAGAAGATGGGGAGATTCATTAGTCATTCGTTTCTCCGCTGAGATTTATCACAA 1426
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      TACAGTCCCCCCTCCTGTTTTGGACATATGAAATGGTGCATTTTGTTGGCAACTATAAAT 1486
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      GCTTTCCTCCAGAGAAGGACAATTTCTTTATGGGGATTATCTTCTTGTCTTGATCTGGCT 1546
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      TGTTGGAAATGGACAATAATAGCCTTCATTGTTTGGATGCTCACAATGTAGTCATGAAGG 1606
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      TTCTTGTACTGCAAAACTTTTGTTGCCTTTAGTTATCTTCTTATCCCCTTCCCTTTGTCA 1666
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      GTCTGGGTATAGGTTGTATTTGTTATAGGAGGGGGAGGGCTGTAAAGTGTTTAGTGGCTG 1726
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      AAAAAGATCCTTTAGAAGGTTAGGTGCGAAATGCATGCAATGCTGAGGTTTATAACTGAA 1786
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      TTTCGTTGAATCATCTGTGCCCAGTGGCCACTGTATCCTGATTAGAGCTCTTGATCTACA 1846
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      AGACTTGTGTTTCTCCAAAAATCTCCCGTCTCCTGCATTATGTTGCCATTGAGCGGCACC 1906
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      TGGCTGTTGCTGTAACACCGAGGCCTGTCTGTGGGTGCATGGAATGCAAAGCACACTTGG 1966
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      TTGGAAGCATGGCAAGAGGCAAAGCCTGCCCAACTCACTCATTGGTCGTGCTGCTGCAGC 2026
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      AGTTTCATACTCGTTTTGACGTGGTTTTCACTTTGGAGTTGTTTAACATCTTGTTATTTA 2086
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      CTATGCCATCTAACATAGTTTTCGTATGGTAGCAGTTTTGTAATAGTTTGCTGCTATTTA 2146
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      TGGTGCTTTATAGATAGATGTACTTGCAGCTGACGCTGTTGATATTCTCATGAATACATT 2206
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      GATTCTGTAGGCTATGTTTGTTGGATGGCTGATACTGAAACGATAACATGATCCATCCTT 2266
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      GTATTATGGCTGTAGATTATTAACTTTTTTTGTTGGAAGGGAACAATTACTAACTAATCT 2326
consensus_12183#2      ------------------------------------------------------------
consensus_12183#1      ------------------------------------------------------------
                                                                                   

consensus_12183#0      TCAC 2330
consensus_12183#2      ----
consensus_12183#1      ----


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)