cluster # 12186

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Oryza sativa
cluster # 12186 cluster # 12186 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12186#0 length = 1791 sequences # 8

consensus_12186#1 length = 943 sequences # 1
consensus_12186#2 length = 488 sequences # 1

consensusID : consensus_12186#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1791
fasta sequence

                              [TCCGACTCCCCCGTCCGAAGCCCGACTCCGACCCATCCCGTCGTCCTCGTCGTCGTCCTCCTCCTTTGCTTGCCTTGCCTGCCTCGCTTCGCTCGCATCACGTGGCTCCGCCTCCTCGTCTCCCTCCCCCCGCACGCATCACCATCCTCCTCCTCCTCCTCCCTCCCGCGACCACCCCGTGAGGTGTATACGCTACATTTACAATTGATTGATCTGGCTTGTCCACCCCTCACATGAGCTCACAAGTCTCCACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTTGAGTCCCCTCACACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACCAGGATATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCTGCTGGAACCAGCAATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATCTGAAGAGTGGTGGATTTGGGATTGTTGAAATGCTGTTCCGTTGCAACATCCTTGCTCTTGTAGGTGGTGGCTCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGGATGATCACCGGAGCCATTGTATTGGAGAGTTTGCCTTCCGCTCTGATGTCCGGGCTGTAAAATTGGGGAAGGACTACATTGTCATTGTTCTTGAGCGCAAGATATACGTTTATAACTTCACAGATTTGAAGTTGCTCCATCAGATTGAGACCCAGTCCAATCCAAAAGGATTGTGCTGCCTCTCTCATCATTCCAACACTTCAGTGTTGGCCTGCCCTGGGGTGCATCAAGGGCATGTCCGGGTTGAGCATTTTGGGTTGAAGGTGACAAGGATGATTTCAGCTCATGATTCTCACATTTCTTGCATGGCATTGACAATGGATGGCCTCCTGCTGGCAACAGCAAGCATGAAGGGTACTTTGATAAGAATATTCAACACAATGGATGGTACTCGCCTGCAAGAGGTGCGCAGAGGGCTTGACAAAGCAGACATATACAGCATTGCGCTATCACCCAATGTGCAGTGGTTGGCAGTGTCCAGTGACAAAGGAACTGTTCATATTTTCAGTTTAAGAGTGAGAGTTGCAGGGGAAGATGCTAGTAATGAACAGCGCAGTCTTGAAGGTCCACGGATGGATCACCAGAACTCTTCTAGTTCTATAGATCCTCTTATTCAAACGAACACT-GGATCCAATGCTAGCTCATCATTGTCATTCATGAAAGGGATTCTGCCGAAGTATTTCAGTTCAGAGTGGTCATTTGCTCAGTTCCATTTACCAGAAGTCACACGTTACATAGTAGCGTTTGGTGCTCAAAACACTGTCATGATGGTTGGCCTGGATGGCAGCTTCTACAGGTGCAGCTTTGACCAGGTTAATGGCGGGCAGATGCTGCAGAAGGAATATTTCCGGTTTATCAAGGCTGACCTCACCCCCCTGAGGACCTCGGCCCCCTGAACTGCGTGACGAAATCATATCACCTTGATAACTTGTATATATAAAGGTTGTGCTCAGTCCATTGTATATAAATGCCGTCCTCTCGCCGGCAAAGTTCTAGGTAGCCGGAATAAGGAGAGCTGGGTGTTCGATCGCAACCTACTTCCACCCTCATTCTGAAGCATTTGTCCCCCCGTCGAAATTGCAGCTAGTTGATTTTAGTTTTCTTTCCTTTCGATGAACACAACTTTTCACTG--------ATATATATATATGACATAAAAGCTCAAGAATGAAATACAAATCTGAGCTTATATTGTAGTTCTACTTC]

[+] EMBL CB620150             [TCCGACTCCCCCGTCCGAAGCCCGACTCCGACCCATCCCGTCGTCCTCGTCGTCGTCCTCCTCCTTTGCTTGCCTTGCCTGCCTCGCTTCGCTCGCATCACGTGGCTCCGCCTCCTCGTCTCCCTCCCCCCGCACGCATCACCATCCTCCTCCTCCTCCTCCCTCCCGCGACCACCCCGTGAGGTGTATACGCTACATTTACAATTGATTGATCTGGCTTGTCCACCCCTCACATGAGCTCACAAGTCTCCACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTTGAGTCCCCTCACACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACCAGGATATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCTGCTGGAACCAGCAATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATCTGAAGAGTGGTGGATTTGGGATTGTTGAAATGCTGTTCCGTTGCAACATCCTTGCTCTTGTAGGTGGTGGCTCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGGATGATCACCGGAGCCATTGTATTGGAGAGTTTGCCTTCCGCTCTGATGTCCGGGCTGTAAAATTGGGGAAGGACTACATTGTCATTGTTCTTGAGCGCAAGATATACGTTTATAACTTCACAGATTTGAAGTTGCTCCATCAGATTGAGACCCAGTCCAATCCAAAAGGATTGTGCTGCCTCTCTCATCATTCCAACACTTCAGTGTTGGCCTGCCCTGGGGTGCATCAAGGGCATGTCCGGGTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK072657             [                                                                               TGCCTCGCTTCGCTCGCATCACGTGGCTCCGCCTCCTCGTCTCCCTCCCCCCGCACGCATCACCATCCTCCTCCTCCTCCTCCCTCCCGCGACCACCCCGTGAGGTGTATACGCTACATTTACAATTGATTGATCTGGCTTGTCCACCCCTCACATGAGCTCACAAGTCTCCACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTTGAGTCCCCTCACACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACCAGGATATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCTGCTGGAACCAGCAATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATCTGAAGAGTGGTGGATTTGGGATTGTTGAAATGCTGTTCCGTTGCAACATCCTTGCTCTTGTAGGTGGTGGCTCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGGATGATCACCGGAGCCATTGTATTGGAGAGTTTGCCTTCCGCTCTGATGTCCGGGCTGTAAAATTGGGGAAGGACTACATTGTCATTGTTCTTGAGCGCAAGATATACGTTTATAACTTCACAGATTTGAAGTTGCTCCATCAGATTGAGACCCAGTCCAATCCAAAAGGATTGTGCTGCCTCTCTCATCATTCCAACACTTCAGTGTTGGCCTGCCCTGGGGTGCATCAAGGGCATGTCCGGGTTGAGCATTTTGGGTTGAAGGTGACAAGGATGATTTCAGCTCATGATTCTCACATTTCTTGCATGGCATTGACAATGGATGGCCTCCTGCTGGCAACAGCAAGCATGAAGGGTACTTTGATAAGAATATTCAACACAATGGATGGTACTCGCCTGCAAGAGGTGCGCAGAGGGCTTGACAAAGCAGACATATACAGCATTGCGCTATCACCCAATGTGCAGTGGTTGGCAGTGTCCAGTGACAAAGGAACTGTTCATATTTTCAGTTTAAGAGTGAGAGTTGCAGGGGAAGATGCTAGTAATGAACAGCGCAGTCTTGAAGGTCCACGGATGGATCACCAGAACTCTTCTAGTTCTATAGATCCTCTTATTCAAACGAACACT GGATCCAATGCTAGCTCATCATTGTCATTCATGAAAGGGATTCTGCCGAAGTATTTCAGTTCAGAGTGGTCATTTGCTCAGTTCCATTTACCAGAAGTCACACGTTACATAGTAGCGTTTGGTGCTCAAAACACTGTCATGATGGTTGGCCTGGATGGCAGCTTCTACAGGTGCAGCTTTGACCAGGTTAATGGCGGGCAGATGCTGCAGAAGGAATATTTCCGGTTTATCAAGGCTGACCTCACCCCCCTGAGGACCTCGGCCCCCTGAACTGCGTGACGAAATCATATCACCTTGATAACTTGTATATATAAAGGTTGTGCTCAGTCCATTGTATATAAATGCCGTCCTCTCGCCGGCAAAGTTCTAGGTAGCCGGAATAAGGAGAGCTGGGTGTTCGATCGCAACCTACTTCCACCCTCATTCTGAAGCATTTGTCCCCCCGTCGAAATTGCAGCTAGTTGATTTTAGTTTTCTTTCCTTTCGATGAACACAACTTTTCACTG        ATATATATATATGACATAAAAGCTCAAGAATGAAATACAAATCTGAGCTTATATTGTAGTTCTACTTC]
[+] EMBL CF305835             [                                                                                                      TGGCTCCGCCTCCTCGTCTCCCTCCCCCCGCACGCATCACCATCCTCCTCCTCCTCCTCCCTCCCGCGACCACCCCGTGAGGTGTATACGCTACATTTACAATTGATTGATCTGGCTTGTCCACCCCTCACATGAGCTCACTTTTCTCCACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTTGAGTCCCCTCACACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACCAGGATATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCTGCTGGAACCAGCAATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATCTGAAGAGTGGTGGATTTGGGATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF305733             [                                                                                                                                                  CTCCTCCTCCTCCTCCCTCCCGCGACCACCCCGTGAGGTGTATACGCTACATTTACAATTGATTGATCTGGCTTGTCCACCCCTCACATGAGCTCACAAGTCTCCACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTTGAGTCCCCTCACACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACCAGGATATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCTGCTGGAACCAGCAATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATCTGAAGAGTGGTGGATTTGGGATTGTTGAAATGCTGTTCCGTTGCAACATCCTTGCTCTTGTAGGTGGTGGCTCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGGATGATCACCGGAGCCATTGTATTGGAGAGTTTGCCTTCCGCTCTGATGTGCGGGCTGTAAAATTGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB657807             [                                                                                                                                                                                                                                                                                              GACATTTGAGTCCCCTCACACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACCAGGATATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCTGCTGGAACCAGCAATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATCTGAAGAGTGGTGGATTTGGGATTGTTGAAATGCTGTTCCGTTGCAACATCCTTGCTCTTGTAGGTGGTGGCTCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGGATGATCACCGGAGCCATTGTATTGGAGAGTTTGCCTTCCGCTCTGATGTCCGGGCTGTAAAATTGGGGAAGGACTACATTGTCATTGTTCTTGAGCGCAAGATATACGTTTATAACTTCACAGATTTGAAGTTGCTCCATCAGATTGAGACCCAGTCCAATCCAAAAGGATTGTGCTGCCTCTCTCATCATTCCAACACTTCAGTGTTGGCCTGCCCTGGGGTGCATCAAGGGCATGTCCGGGTTGAGCATTTTGGGTTGAAGGTGACAAGGATGATTTCAGCTCATGATTCTCACATTTCTTGCATGGCATTGACAATGGATGGCCTCCTGCTGGCAACAGCAAGCATGAAGGGTACTTTGATAAGAATATTCAACACAATGGATGGTACTCGCCTGCAAGAGGTGCGCAGAGGGCTTGACAAAGCAGACATATACAGCATTGCGCTATCACCCCATGTGCAGTGGTTGGCAGTGTCCAGTGACAAAAGAACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB657808             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GACAAAGCAGACATATACAGCATTGCGCTATCACCCAATGTGCAGTGGTTGGCAGTGTCCAGTGACAAAGGAACTGTTCATATTTTCAGTTTAAGAGTGAGAGTTGCAGGGGAAGATGCTAGTAATGAACAGCGCAGTCTTGAAGGTCCACGGATGGATCACCAGAACTCTTCTAGTTCTATAGATCCTCTTATTCAAACGAACACT GGATCCAATGCTAGCTCATCATTGTCATTCATGAAAGGGATTCTGCCGAAGTATTTCAGTTCAGAGTGGTCATTTGCTCAGTTCCATTTACCAGAAGTCACACGTTACATAGTAGCGTTTGGTGCTCAAAACACTGTCATGATGGTTGGCCTGGATGGCAGCTTCTACAGGTGCAGCTTTGACCAGGTTAATGGCGGGCAGATGCTGCAGAAGGAATATTTCCGGTTTATCAAGGCTGACCTCACCCCCCTGAGGACCTCGGCCCCCTGAACTGCGTGACGAAATCATATCACCTTGATAACTTGTATATATAAAGGTTGTGCTCAGTCCATTGTATATAAATGCCGTCCTCTCGCCGGCAAAGTTTTAGGTAGCCGGAATAAGGAGAGCTGGGTGTTCGATCGCAACCTACTTCCACCCTCATTCTGAAGCATTTGTCCCCCCGTCGAAATTGCAGCTAGTTGATTTTAGTTTTCTTTCCTTTCGATGAACACAACTTTTCACTG        ATATATATATATGACATAAAAGCTCAAGAATGAAATACAAATCTGAGCTTATAT              ]
[+] EMBL CA767501             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGCATTGCGCTATCACCCAATGTGCAGTGGTTGGCAGTGTCCAGTGACAAAGGAACTGTTCATATTTTCAGTTTAAGAGTGAGAGTTGCAGGGGAAGATGCTAGTAATGAACAGCGCAGTCTTGAAGGTCCACGGATGGATCACCAGAACTCTTCTAGTTCTATAGATCCTCTTATTCAAACGAACACTCNGATCCAATGCTAGTTCATCATTGTCATTCATGAAAGGGATTCTGCCGAAGTATTTCAGTTCAGAGTGGTCATTTGCTCAGTTCCATTTACCANAAGTCACACGTTACATAGTAGCGTTTGGTGCTCAAAACACTGTCATGATGGTTGGCCTGGATGGCAGCTTCTACAGGTGCAGCTTTGACCAGGTTAATGGCGGGCAGATGCTGCAGAAGGAATATTTCCGGTTTATCAAGGCTGACCTCACCCCCCTGAGGACCTCGGCCCCCTGAACTGCGTGACGAAATCATATCACCTTGATAACTTGTATATATAAAGGTTGTGCTCAGTCCATTGTATATAAATGCCGTCCTCTCGCCGGCAAAGTTCTAGGTAGCCGGAATAAGGAGAGCTGGGTGTTCGATCGCAACCTACTTCCACCCTCATTCTGAAGCATTTGTCCCCCCGTCGAAATTGCAGCTAGNTGATTTTAGTTTTCTTTCCTTTCGATGAACACAACTTTTCACTGAT      ATATATATATATGACATAAAAGCTCAAGAATGAAATACAAATCTGgagg                   ]
[+] EMBL BI804216             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATTCTCCCGAAGTATTTCAGTTCAGAGTGGTCATTTGCTCAGTTCCATTTACCAGAAGTCACACGTTACATAGTAGCGTTTGGTGCTCAAAACACTGTCATGATGGTTGGCCTGGAT GCAGCTTCTACAGGTGCAGCTTTGACCAGGTTAATGGCGGGCAGATGCTGCAGAAGGAATATTTCCGGTTTATCAAGGCTGACCTCACCCCCCTGAGGACCTCGGCCCCCTGAACTGCGTGACGAAATCATATCACCTTGATAACTTGTATATATAAAGGTTGTGCTCAGTCCATTGTATATAAATGCCGTCCTCTCGCCGGC AAGTTCTAGGTAGCCGGAATAAGGAGAGCTGGGTGTTCGATCGC ACCTACTTCCACCCTCATTCTGAAGCATTTGTCCCCCCGTCGAAATTGCAGCTAGTTGATTTTAGTTTTCTTTCCTTTCGATGAACACAACTTTTCACTGATATATATATATATATATATGACATAAAAGCTCAAGAATGAAATACAAATCTGAGCTTATATTGTAaaaaaaaaa ]




>consensus_12186#0
TCCGACTCCCCCGTCCGAAGCCCGACTCCGACCCATCCCGTCGTCCTCGTCGTCGTCCTC
CTCCTTTGCTTGCCTTGCCTGCCTCGCTTCGCTCGCATCACGTGGCTCCGCCTCCTCGTC
TCCCTCCCCCCGCACGCATCACCATCCTCCTCCTCCTCCTCCCTCCCGCGACCACCCCGT
GAGGTGTATACGCTACATTTACAATTGATTGATCTGGCTTGTCCACCCCTCACATGAGCT
CACAAGTCTCCACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTTGAGTCCC
CTCACACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACC
AGGATATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCTGCTGGAA
CCAGCAATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATC
TGAAGAGTGGTGGATTTGGGATTGTTGAAATGCTGTTCCGTTGCAACATCCTTGCTCTTG
TAGGTGGTGGCTCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGGATGATCACC
GGAGCCATTGTATTGGAGAGTTTGCCTTCCGCTCTGATGTCCGGGCTGTAAAATTGGGGA
AGGACTACATTGTCATTGTTCTTGAGCGCAAGATATACGTTTATAACTTCACAGATTTGA
AGTTGCTCCATCAGATTGAGACCCAGTCCAATCCAAAAGGATTGTGCTGCCTCTCTCATC
ATTCCAACACTTCAGTGTTGGCCTGCCCTGGGGTGCATCAAGGGCATGTCCGGGTTGAGC
ATTTTGGGTTGAAGGTGACAAGGATGATTTCAGCTCATGATTCTCACATTTCTTGCATGG
CATTGACAATGGATGGCCTCCTGCTGGCAACAGCAAGCATGAAGGGTACTTTGATAAGAA
TATTCAACACAATGGATGGTACTCGCCTGCAAGAGGTGCGCAGAGGGCTTGACAAAGCAG
ACATATACAGCATTGCGCTATCACCCAATGTGCAGTGGTTGGCAGTGTCCAGTGACAAAG
GAACTGTTCATATTTTCAGTTTAAGAGTGAGAGTTGCAGGGGAAGATGCTAGTAATGAAC
AGCGCAGTCTTGAAGGTCCACGGATGGATCACCAGAACTCTTCTAGTTCTATAGATCCTC
TTATTCAAACGAACACTGGATCCAATGCTAGCTCATCATTGTCATTCATGAAAGGGATTC
TGCCGAAGTATTTCAGTTCAGAGTGGTCATTTGCTCAGTTCCATTTACCAGAAGTCACAC
GTTACATAGTAGCGTTTGGTGCTCAAAACACTGTCATGATGGTTGGCCTGGATGGCAGCT
TCTACAGGTGCAGCTTTGACCAGGTTAATGGCGGGCAGATGCTGCAGAAGGAATATTTCC
GGTTTATCAAGGCTGACCTCACCCCCCTGAGGACCTCGGCCCCCTGAACTGCGTGACGAA
ATCATATCACCTTGATAACTTGTATATATAAAGGTTGTGCTCAGTCCATTGTATATAAAT
GCCGTCCTCTCGCCGGCAAAGTTCTAGGTAGCCGGAATAAGGAGAGCTGGGTGTTCGATC
GCAACCTACTTCCACCCTCATTCTGAAGCATTTGTCCCCCCGTCGAAATTGCAGCTAGTT
GATTTTAGTTTTCTTTCCTTTCGATGAACACAACTTTTCACTGATATATATATATGACAT
AAAAGCTCAAGAATGAAATACAAATCTGAGCTTATATTGTAGTTCTACTTC

consensusID : consensus_12186#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 943
fasta sequence

                              [CCCCCCGCACGCATCACCATCCTCCTCCTCCTCCTCCCTCCCGCGACCACCCCGTGAGGTGTATACGCTACATTTACAATTGATTGATCTGGCTTGTCCACCCCTCACATGAGCTCACAAGTCTCCACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTTGAGTCCCCTCACACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACCAGGATATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCTGCTGGAACCAGCAATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATCTGAAGAGTGGTGGATTTGGGATTGTTGAAATGCTGTTCCGTTGCAACATCCTTGCTCTTGTAGGTGGTGGCTCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGAATGATCACNNCGAGCCATTGTATTGGAGAGTTTGCCTTCCGCTCTGATGTCCCGGCTGTANAATTGNGGAAGGACTACATTGTCATTGTTCTTGAGCGCANGATATACGTTTATAACTTTCACAGATTTGAAGTGCTCATCAGATGAGACCAGTCCCATCAANAGGATGTGCTGCTNTCTATCATTCACCACTCATGTGGCCTGCCCTGNGTGCATANGGCTTGTCGGTTGACATTTTGGTTAAGGTACAGGATGATCAGCTATGATTCAATTCTTGCATGATTGACATGATGCTTCTGTGCAACACAACTTAAGGTCTTGTTNAATTAAACATGAAGAATGGTGTACTCTCAAGGAGGCGAGTGGTAAAAATATATATTTCTCTCACCACGGGGGTGGAGCGACAAGCATTATTTTCTGTTTTTTGAGAAGAGGAGGTGGGGAAGAAATATGACGCTGGCGGATTTTTTAACTACA]

[+] EMBL AW155223             [CCCCCCGCACGCATCACCATCCTCCTCCTCCTCCTCCCTCCCGCGACCACCCCGTGAGGTGTATACGCTACATTTACAATTGATTGATCTGGCTTGTCCACCCCTCACATGAGCTCACAAGTCTCCACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTTGAGTCCCCTCACACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACCAGGATATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCTGCTGGAACCAGCAATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATCTGAAGAGTGGTGGATTTGGGATTGTTGAAATGCTGTTCCGTTGCAACATCCTTGCTCTTGTAGGTGGTGGCTCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGAATGATCACNNCGAGCCATTGTATTGGAGAGTTTGCCTTCCGCTCTGATGTCCCGGCTGTANAATTGNGGAAGGACTACATTGTCATTGTTCTTGAGCGCANGATATACGTTTATAACTTTCACAGATTTGAAGTGCTCATCAGATGAGACCAGTCCCATCAANAGGATGTGCTGCTNTCTATCATTCACCACTCATGTGGCCTGCCCTGNGTGCATANGGCTTGTCGGTTGACATTTTGGTTAAGGTACAGGATGATCAGCTATGATTCAATTCTTGCATGATTGACATGATGCTTCTGTGCAACACAACTTAAGGTCTTGTTNAATTAAACATGAAGAATGGTGTACTCTCAAGGAGGCGAGTGGTAAAAATATATATTTCTCTCACCACGGGGGTGGAGCGACAAGCATTATTTTCTGTTTTTTGAGAAGAGGAGGTGGGGAAGAAATATGACGCTGGCGGATTTTTTAACTACA]




>consensus_12186#1
CCCCCCGCACGCATCACCATCCTCCTCCTCCTCCTCCCTCCCGCGACCACCCCGTGAGGT
GTATACGCTACATTTACAATTGATTGATCTGGCTTGTCCACCCCTCACATGAGCTCACAA
GTCTCCACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTTGAGTCCCCTCAC
ACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACCAGGAT
ATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCTGCTGGAACCAGC
AATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATCTGAAG
AGTGGTGGATTTGGGATTGTTGAAATGCTGTTCCGTTGCAACATCCTTGCTCTTGTAGGT
GGTGGCTCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGAATGATCACNNCGAG
CCATTGTATTGGAGAGTTTGCCTTCCGCTCTGATGTCCCGGCTGTANAATTGNGGAAGGA
CTACATTGTCATTGTTCTTGAGCGCANGATATACGTTTATAACTTTCACAGATTTGAAGT
GCTCATCAGATGAGACCAGTCCCATCAANAGGATGTGCTGCTNTCTATCATTCACCACTC
ATGTGGCCTGCCCTGNGTGCATANGGCTTGTCGGTTGACATTTTGGTTAAGGTACAGGAT
GATCAGCTATGATTCAATTCTTGCATGATTGACATGATGCTTCTGTGCAACACAACTTAA
GGTCTTGTTNAATTAAACATGAAGAATGGTGTACTCTCAAGGAGGCGAGTGGTAAAAATA
TATATTTCTCTCACCACGGGGGTGGAGCGACAAGCATTATTTTCTGTTTTTTGAGAAGAG
GAGGTGGGGAAGAAATATGACGCTGGCGGATTTTTTAACTACA

consensusID : consensus_12186#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [CCGCCGGCAAGGTACTCCTCGCAAAGGTGCGCAGAGGGTTGACAAGCAAACATATCAGCAATGCGCTATCACCAATTGGCAGTGTTGGCAGTGTCAAGTGACAAGGAACTGTTCATATTTCAGTTTTAGAGTGAGAGTTGCAGGGGAAGATGCTAGTAATGAACAGCGCAGTCTTGAAGGTCCACGGATGGATCACCAGAACTCTTCTAGTTCTATAGATCCTCTTATTCAAACGAACACTGGATCCAATGCTAGCTCATCATTGTCATTCATGAAAGGGATTCTGCCGAAGTATTTCAGTTCAGAGTGGTCATTTGCTCAGTTCCATTTACCAGAAGTCACACGTTACATAGTAGCGTTTGGTGCTCAAAACACTGTCATGATGGTTGGCCTGGATGGCAGCTTCTACAGGTGCAGCTTTGACCAGGTTAATGGCGGGCAGATGCTGCAGAAGGAATATTTCCGGTTTATCAAGGCTGACCTCACCC]

[-] EMBL AW069960             [CCGCCGGCAAGGTACTCCTCGCAAAGGTGCGCAGAGGGTTGACAAGCAAACATATCAGCAATGCGCTATCACCAATTGGCAGTGTTGGCAGTGTCAAGTGACAAGGAACTGTTCATATTTCAGTTTTAGAGTGAGAGTTGCAGGGGAAGATGCTAGTAATGAACAGCGCAGTCTTGAAGGTCCACGGATGGATCACCAGAACTCTTCTAGTTCTATAGATCCTCTTATTCAAACGAACACTGGATCCAATGCTAGCTCATCATTGTCATTCATGAAAGGGATTCTGCCGAAGTATTTCAGTTCAGAGTGGTCATTTGCTCAGTTCCATTTACCAGAAGTCACACGTTACATAGTAGCGTTTGGTGCTCAAAACACTGTCATGATGGTTGGCCTGGATGGCAGCTTCTACAGGTGCAGCTTTGACCAGGTTAATGGCGGGCAGATGCTGCAGAAGGAATATTTCCGGTTTATCAAGGCTGACCTCACCC]




>consensus_12186#2
CCGCCGGCAAGGTACTCCTCGCAAAGGTGCGCAGAGGGTTGACAAGCAAACATATCAGCA
ATGCGCTATCACCAATTGGCAGTGTTGGCAGTGTCAAGTGACAAGGAACTGTTCATATTT
CAGTTTTAGAGTGAGAGTTGCAGGGGAAGATGCTAGTAATGAACAGCGCAGTCTTGAAGG
TCCACGGATGGATCACCAGAACTCTTCTAGTTCTATAGATCCTCTTATTCAAACGAACAC
TGGATCCAATGCTAGCTCATCATTGTCATTCATGAAAGGGATTCTGCCGAAGTATTTCAG
TTCAGAGTGGTCATTTGCTCAGTTCCATTTACCAGAAGTCACACGTTACATAGTAGCGTT
TGGTGCTCAAAACACTGTCATGATGGTTGGCCTGGATGGCAGCTTCTACAGGTGCAGCTT
TGACCAGGTTAATGGCGGGCAGATGCTGCAGAAGGAATATTTCCGGTTTATCAAGGCTGA
CCTCACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12186#0      TCCGACTCCCCCGTCCGAAGCCCGACTCCGACCCATCCCGTCGTCCTCGTCGTCGTCCTC 60
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      CTCCTTTGCTTGCCTTGCCTGCCTCGCTTCGCTCGCATCACGTGGCTCCGCCTCCTCGTC 120
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      TCCCTCCCCCCGCACGCATCACCATCCTCCTCCTCCTCCTCCCTCCCGCGACCACCCCGT 180
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      GAGGTGTATACGCTACATTTACAATTGATTGATCTGGCTTGTCCACCCCTCACATGAGCT 240
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      CACAAGTCTCCACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTTGAGTCCC 300
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      CTCACACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACC 360
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      AGGATATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCTGCTGGAA 420
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      CCAGCAATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATC 480
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      TGAAGAGTGGTGGATTTGGGATTGTTGAAATGCTGTTCCGTTGCAACATCCTTGCTCTTG 540
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      TAGGTGGTGGCTCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGGATGATCACC 600
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      GGAGCCATTGTATTGGAGAGTTTGCCTTCCGCTCTGATGTCCGGGCTGTAAAATTGGGGA 660
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      AGGACTACATTGTCATTGTTCTTGAGCGCAAGATATACGTTTATAACTTCACAGATTTGA 720
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      AGTTGCTCCATCAGATTGAGACCCAGTCCAATCCAAAAGGATTGTGCTGCCTCTCTCATC 780
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      ATTCCAACACTTCAGTGTTGGCCTGCCCTGGGGTGCATCAAGGGCATGTCCGGGTTGAGC 840
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ------------------------------------------------------------
                                                                                   

consensus_12186#0      ATTTTGGGTTGAAGGTGACAAGGATGATTTCAGCTCATGATTCTCACATTTCTTGCATGG 900
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      --CCCCCCGCACGCATCACCATCCTCCTCCTCCTCCTCCCTCCCGCGACCACCCCGTGAG 58
                                                                                   

consensus_12186#0      CATTGACAATGGATGGCCTCCTGCTGGCAACAGCAAGCATGAAGGGTACTTTGATAAGAA 960
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      GTGTATACGCTACATTTACAATTGATTGATCTGGCTTGTCCACCCCTCACATGAGCTCAC 118
                                                                                   

consensus_12186#0      TATTCAACACAATGGATGGTACTCGCCTGCAAGAGGTGCGCAGAGGGCTTGACAAAGCAG 1020
consensus_12186#2      ------CCGCCG-GCAAGGTACTC-CTCGCAA-AGGTGCGCAGAGGG-TTGACAA-GCAA 49
consensus_12186#1      AAGTCTCCACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTTGAGTCCCCTC 178
                              * *       ***   * *   * *     **   *     ****     *  

consensus_12186#0      ACATATA-CAGCATTGCGCTATCACCCAATGTGCAGTGGTTGGCAGTGTCCAGTGACAAA 1079
consensus_12186#2      ACATAT--CAGCAATGCGCTATCACC-AATTGGCAGTG-TTGGCAGTGTCAAGTGACAA- 104
consensus_12186#1      ACACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACCAGG 238
                       *** **  **    *  * *   **       ** *    *** **   * *    **  

consensus_12186#0      GGAACTGTTCATATTTTCAGTTTAAGAGTGAGAGTTGCAGGGGAAGATGCTAGTAATGAA 1139
consensus_12186#2      GGAACTGTTCATATTT-CAGTTTTAGAGTGAGAGTTGCAGGGGAAGATGCTAGTAATGAA 163
consensus_12186#1      ATATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTT-GGTTGCTTCGCTGCTGG-AAC 296
                         * * *    *  *     * *  ** * **   *   **       ***  *    * 

consensus_12186#0      CAGCGCAGTCTTGAAGGTCCACGGATGGATCACC----AGAACTCTTCTAGT-----TCT 1190
consensus_12186#2      CAGCGCAGTCTTGAAGGTCCACGGATGGATCACC----AGAACTCTTCTAGT-----TCT 214
consensus_12186#1      CAGCAATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATCT 356
                       ****   * *** * * **      **   * *     ** *  ***  **      ***

consensus_12186#0      ATAGATCCTCTTATTCAAACGAACACTGGA-TCCAATGCTAGCTCATCATTGTCATTCAT 1249
consensus_12186#2      ATAGATCCTCTTATTCAAACGAACACTGGA-TCCAATGCTAGCTCATCATTGTCATTCAT 273
consensus_12186#1      GAAGAGTGGTGGATTTGG--GATTGTTGAAATGCTGTTCCGTTGCAACATCCTTGCTCTT 414
                         ***       ***     **    ** * * *  * *     ** ***  *   ** *

consensus_12186#0      GAAAGGGATTCTGCCGAAGTATTTCAGTT------CAGAGTGGTCATTTG---------C 1294
consensus_12186#2      GAAAGGGATTCTGCCGAAGTATTTCAGTT------CAGAGTGGTCATTTG---------C 318
consensus_12186#1      GTAGGTGGTGGCTCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGAATGATCAC 474
                       * * * * *    ** * * *  * *         **  **  * ** **         *

consensus_12186#0      TCAGTTCCATT-TACCAGAAGTCACACGTTACATAGTAGCGTTTGGTGCTCAAAACACTG 1353
consensus_12186#2      TCAGTTCCATT-TACCAGAAGTCACACGTTACATAGTAGCGTTTGGTGCTCAAAACACTG 377
consensus_12186#1      NNCGAGCCATTGTATTGGAGAGTTTGCCTTCCGCTCTGATGTCCCGGCTGTANAATTGNG 534
                          *  ***** **   **       * ** *    *   **   *     * **    *

consensus_12186#0      T--------CATGATGGTTGGCCTGGATGGCAGCTTCTACAGGTGCAGCTTTGACCAGGT 1405
consensus_12186#2      T--------CATGATGGTTGGCCTGGATGGCAGCTTCTACAGGTGCAGCTTTGACCAGGT 429
consensus_12186#1      GAAGGACTACATTGTCATTGTTCTTGAGCGCANGATATACGTTTATAACTTTCACAGATT 594
                                ***  *  ***  ** **  ***   * ***   *  * **** **    *

consensus_12186#0      TAA--TGGCGGGCAGATG-------CTGCAGAAGGAATATTTCCGGTTTATCAAGGCTGA 1456
consensus_12186#2      TAA--TGGCGGGCAGATG-------CTGCAGAAGGAATATTTCCGGTTTATCAAGGCTGA 480
consensus_12186#1      TGAAGTGCTCATCAGATGAGACCAGTCCCATCAANAGGATGTGCTGCTNTCTATCATTCA 654
                       * *  **     ******          **  *  *  ** * * * *    *    * *

consensus_12186#0      CCTCACCCCCCTGAGGACCTCGGCCCCCTGAACTGCGTGACGAAATCATATCACCTTGAT 1516
consensus_12186#2      CCTCACCC---------------------------------------------------- 488
consensus_12186#1      CCACTCATGTGGCCTGCCCTGNGTGCATANGGCTTGTCGGTTGACATTTTGGTTAAGGTA 714
                       ** * *                                                      

consensus_12186#0      AACTTGTATATATAAAGGTTGTGCTCAGTCCATTGTATATAAATGCCGTCCTCTCGCCGG 1576
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      CAGGATGATCAGCTATGATTCAATTCTTGCATGATTGACATGATGCTTCTGTGCAACACA 774
                                                                                   

consensus_12186#0      CAAAGTTCTAGGTAGCCGGAATAAGGAGAGCTGGGTGTTCGATCGCAACCTACTTCCACC 1636
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      ACTTAAGGTCTTGTTNAATTAAACATGAAGAATGGTGTACTCTCAAGGAGGCGAGTGGTA 834
                                                                                   

consensus_12186#0      CTCATTCTGAAGCATTTGTCCCCCCGTCGAAATTGCAGCTAGTTGATTTTAGTTTTCTTT 1696
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      AAAATATATATTTCTCTCACCACGGGGGTGGAGCGACAAGCATTATTTTCTGTTTTTTGA 894
                                                                                   

consensus_12186#0      CCTTTCGATGAACACAACTTTTCACTGATATATATATATGACATAAAAGCTCAAGAATGA 1756
consensus_12186#2      ------------------------------------------------------------
consensus_12186#1      GAAGAGGAGGTGGGGAAGAAATATGACGCTGGCGGATTTTTTAACTACA----------- 943
                                                                                   

consensus_12186#0      AATACAAATCTGAGCTTATATTGTAGTTCTACTTC 1791
consensus_12186#2      -----------------------------------
consensus_12186#1      -----------------------------------