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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1614 fasta sequence
[AAAAGAGAGAAGGTGAGCTGAGCTGAGCTGAGGTGAAGTGGTGCTGAGGCGAGTGACTGGGGGGCAATGGCAGCGGCGTGGGTGCTGGCCGCGGCGGCGGCGTTGGCGCTGTGGGCGGCGGCGGCGGAGGGGGCAAGGTCGCCGGCGGCGAGGGTGCACCGGCACCTCAAGAGGCTCAACAAGCCGGCCGTCAAGAGCATCGAGAGCCCAGATGGAGACATCATCGACTGCGTGCATCTCTCTCACCAACCAGCATTTGATCATCCCCTACTCAAGAACCATACTCTCCAGATGAGGCCGGCCTACCACCCTGAAGGCTTGTATGATGATGACAAGAGAAGCGTGGCCTCTGACAATGCCGGCGAGAAGCCGATGCTCCAGCTATGGCATCAAAAGGGGAGGTGCCCGGA---CTCC-NCNCGA-TCAGGAGAACGAAGAAGGATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGAAACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTCACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGCCACCATTAATGTGT-GGGAGCCCAAGATTCAGCAGCCTAACGAGTT-CAGCC-TGTCCCAGCTCTGGATC-TTGGGGGGTTCATTTGGTGAGGATCTCAACAGCATCGAGGCCGGGTGGCAGGTCAGCCCAGACCTCTATGGAGATAATAACACTAGGCTGTTCACATACTGGACTAGTGATGCTTACCAAGCAACAGGGTGCTACAACATATTGTGCTCCGGATTCATTCAGATCAACAGCGAGATCGCCATGGGCGCGAGCATCTTCCCCATCTCGAACATCGCCGGCTCACAGTATGATATCAGTATTCTGATCTGGAAGGACCCAAAGGAAGGAAACTGGTGGATGCAGTTCGGCAGGGAGTATGTCCTCGGCTACTGGCCGTCCTTCCTCTTCTCCTACCTCGTCGACAGTGCGTCGATGGTCGAGTGGGGCGGGGAGGTGGTGAACTCGGAGCCCGACGGCACGCACACGTCGACGCAGATGGGGAGCGGGCGGTTCCCGGAGGAAGGGTTCGGCAAGGCGAGCTACTTCAAGAACATCCAGGTGGTGGACAGCAGCAACCAGCTGAAGGCCCCCAAGGGGGTGGGCACCTACACCGAGCAGTCCAATTGCTACGATGTTCAGAACGGCAACAATGGCGAC-TGGGGCACCTAC-TTCTACTATGGCGGCCCGGGGAAGAAC-TCGAATTGCCCATGAATTTGGTGATGAAGAAGCTGATGATATATATATATTTATATATATATATATAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATCATGTGTGGAATACAGATTGATCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTTTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCTGATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGATGATGACAATTGATTTGTGGGTAATTTGCAAGTCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK103449 [AAAAGAGAGAAGGTGAGCTGAGCTGAGCTGAGGTGAAGTGGTGCTGAGGCGAGTGACTGGGGGGCAATGGCAGCGGCGTGGGTGCTGGCCGCGGCGGCGGCGTTGGCGCTGTGGGCGGCGGCGGCGGAGGGGGCAAGGTCGCCGGCGGCGAGGGTGCACCGGCACCTCAAGAGGCTCAACAAGCCGGCCGTCAAGAGCATCGAGAGCCCAGATGGAGACATCATCGACTGCGTGCATCTCTCTCACCAACCAGCATTTGATCATCCCCTACTCAAGAACCATACTCTCCAGATGAGGCCGGCCTACCACCCTGAAGGCTTGTATGATGATGACAAGAGAAGCGTGGCCTCTGACAATGCCGGCGAGAAGCCGATGCTCCAGCTATGGCATCAAAAGGGGAGGTGCCCGGAGGGCACCGTCCCGA TCAGGAGAACGAAGAAGGATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGAAACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTCACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGCCACCATTAATGTGT GGGAGCCCAAGATTCAGCAGCCTAACGAGTT CAGCC TGTCCCAGCTCTGGATC TTGGGGGGTTCATTTGGTGAGGATCTCAACAGCATCGAGGCCGGGTGGCAGGTCAGCCCAGACCTCTATGGAGATAATAACACTAGGCTGTTCACATACTGGACTAGTGATGCTTACCAAGCAACAGGGTGCTACAACATATTGTGCTCCGGATTCATTCAGATCAACAGCGAGATCGCCATGGGCGCGAGCATCTTCCCCATCTCGAACATCGCCGGCTCACAGTATGATATCAGTATTCTGATCTGGAAGGACCCAAAGGAAGGAAACTGGTGGATGCAGTTCGGCAGGGAGTATGTCCTCGGCTACTGGCCGTCCTTCCTCTTCTCCTACCTCGTCGACAGTGCGTCGATGGTCGAGTGGGGCGGGGAGGTGGTGAACTCGGAGCCCGACGGCACGCACACGTCGACGCAGATGGGGAGCGGGCGGTTCCCGGAGGAAGGGTTCGGCAAGGCGAGCTACTTCAAGAACATCCAGGTGGTGGACAGCAGCAACCAGCTGAAGGCCCCCAAGGGGGTGGGCACCTACACCGAGCAGTCCAATTGCTACGATGTTCAGAACGGCAACAATGGCGAC TGGGGCACCTAC TTCTACTATGGCGGCCCGGGGAAGAAC TCGAATTGCCCATGAATTTGGTGATGAAGAAGCTGATGATATATATATATTTATATATATATATATAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATCATGTGTGGAATACAGATTGATCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTTTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCTGATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGATGATGACAATTGATTTGTGGGTAA ]
[+] EMBL OSS4271A [ AAGCGTGGCCTCTGACAATGCCGGCGAGAAGCCGATGCTCCAGCTATGGCATCAAAAGGGGAGGTGCCCGGA CTCC NCNCGANTCAGGAGAACGAAGAAGGATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGAAACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTCACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGNCACCATTAATGTGT GGGGGNCCAAGATTCAGCAGNCTTACGGGTTNAAGCCTTTTCCCAGTTTTGGATCTTTGGGGGGTT ]
[+] EMBL OSS2826A [ AAGCGTGGCCTCTGACAATGCCGGCGAGAAGCCGATGCTCCAGCTATGGCATCAAAAGGGGAGGTGCCCGGA CTNC NCNNGANTCAGGAGAACGAAGAAGGATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGAAACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTCACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGCCACCATTAATGTGTGGGGAGCCCAAGATTCAGCAGCCTAACGAGTT CAGCC TGTCCCAGCTC ]
[+] EMBL OSS15575A [ AGGATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGAAACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTCACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGCCACCATTAATGTGT GGGAGCCCAAGATTCAGCAGCCTAACGAGTT CAGCC TGTCCCAGCTCTGGATC TTGGGGGGTTCATTTGGTGAGGATCTCAACAGCATCGAGGCCGGGTGGCAGGTCAGCCCAGACCTCTATGGAGATAATAACACTAGGCTGTTCACATACTGGACTAGTGATGCTTACCAAGCAACAGGGTGCTACAACATATTGTGCTCCGGATTCATTCAGATCAACAGCGAGATCGCCATGGGNGCGAGATTCTTNCCCATCTCGGACATCGCCGGNTCACAGTATGGTATCAGTATTCTGATCT ]
[+] EMBL C74751 [ ATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGAAACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTCACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGCCACCATTAATGTGT GGGAGCCCAAGATTCAGCAGCCTAACGAGTT CAGCC TGTCCCAGCTCTGGATC TTGGGGGGTTCATTTGGTGAGGATCTCAACAGCATCGAGGCCGGGTGGCAGGTCAGCCCAGACCTCTATGGAGATAATAACACTAGGCTGTTCACATACTGGACTAGTGATGCTTACCAAGCAACANGGTGCTACAACATATTGTGCTCCGGA TCATTCAG ]
[+] EMBL AU198077 [ TTCATTCAGATCAACAGCGAGATCGCCATGGGCGCGAGCATCTTCCCCATCTCGAACATCGCCGGCTCACAGTATGATATCAGTATTCTGATCTGGAAGGACCCAAAGGAAGGAAACTGGTGGATGCAGTTCGGCAGGGAGTATGTCCTCGGCTACTGGCCGTCCTTCCTCTTCTCCTACCTCGTCGACAGTGCGTCGATGGTCGAGTGGGGCGGGGAGGTGGTGAACTCGGAGCCCGACGGCACGCACACGTCGACGCAGATGGGGAGCGGGCGGTTCCCGGAGGAAGGGTTCGGCAAGGCGAGCTACTTCAAGAACATCCAGGTGGTGGACAGCAGCAACCAGCTGAAGGCCCCCAAGGGGGTGGGCACCTACACCGAGCAGTCCAATTGCTACGATGTTCAGAACGGCAACAATGGCGAC TGGGGCACCTAC Tc ]
[+] EMBL AU064337 [ TCGATGGTCGAGTGGGGCGGGGAGGTGGTGAACTCGGAGCCCGACGGCACGCACACGTCGACGCAGATGGGGAGCGGGCGGTTCCCGGAGGAAGGGTTCGGCAAGGCGAGCTACTTCAAGAACATCCAGGTGGTGGACAGCAGCAACCAGCTGAAGGCCCCCAAGGGGGTGGGCACCTACACCGAGCAGTCCAATTGCTACGATGTTCAGAACGGCAACAATGGCGACTTGGGGCAACTACTTTCTACTATGGCGGCCCGGGGAAGAACTTCGATTTGCCCATGA ]
[+] EMBL AU097375 [ TAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATCATGTGTGGAATACAGATTGATCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTTTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCTGATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGATGATGACAATTGATTTGTGGGTAATTTGCAAGTCAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence
[TATATTTATATATATATATATAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATCATGTGTGGAATACAGATTGATCTNCATNTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTTTCTTTTTNNTCTCTTCATTAGTTTTTTCTTCTNCTTTTTCTNATGTGCCATNTAAAAGTTTNTNAANNGANGCNTGGNTTGNGGTGGTGGTNCAGGGGTGGTNATGACAATTGATTTGTNGGTAATTTGCAATGTNNAAANNAAAANAAATATAAAAA]
[+] EMBL AU097207 [TATATTTATATATATATATATAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATCATGTGTGGAATACAGATTGATCTNCATNTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTTTCTTTTTNNTCTCTTCATTAGTTTTTTCTTCTNCTTTTTCTNATGTGCCATNTAAAAGTTTNTNAANNGANGCNTGGNTTGNGGTGGTGGTNCAGGGGTGGTNATGACAATTGATTTGTNGGTAATTTGCAATGTNNAAANNAAAANAAATATAAAAA]
consensusID : consensus_12196#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence
[CAAGCATTAATCATGTGTGGAATACAGATTGANCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTNTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCTGATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGATGATGACAAAAAAAAAAAAAAAACAAAAAAAAAAAA]
[+] EMBL AU164249 [CAAGCATTAATCATGTGTGGAATACAGATTGANCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTNTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCTGATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGATGATGACAAAAAAAAAAAAAAAACAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12196#0 AAAAGAGAGAAGGTGAGCTGAGCTGAGCTGAGGTGAAGTGGTGCTGAGGCGAGTGACTGG 60
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 GGGGCAATGGCAGCGGCGTGGGTGCTGGCCGCGGCGGCGGCGTTGGCGCTGTGGGCGGCG 120
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 GCGGCGGAGGGGGCAAGGTCGCCGGCGGCGAGGGTGCACCGGCACCTCAAGAGGCTCAAC 180
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 AAGCCGGCCGTCAAGAGCATCGAGAGCCCAGATGGAGACATCATCGACTGCGTGCATCTC 240
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 TCTCACCAACCAGCATTTGATCATCCCCTACTCAAGAACCATACTCTCCAGATGAGGCCG 300
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 GCCTACCACCCTGAAGGCTTGTATGATGATGACAAGAGAAGCGTGGCCTCTGACAATGCC 360
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 GGCGAGAAGCCGATGCTCCAGCTATGGCATCAAAAGGGGAGGTGCCCGGACTCCNCNCGA 420
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 TCAGGAGAACGAAGAAGGATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGA 480
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 AACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTC 540
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 ACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGCCACCATTA 600
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 ATGTGTGGGAGCCCAAGATTCAGCAGCCTAACGAGTTCAGCCTGTCCCAGCTCTGGATCT 660
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 TGGGGGGTTCATTTGGTGAGGATCTCAACAGCATCGAGGCCGGGTGGCAGGTCAGCCCAG 720
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 ACCTCTATGGAGATAATAACACTAGGCTGTTCACATACTGGACTAGTGATGCTTACCAAG 780
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 CAACAGGGTGCTACAACATATTGTGCTCCGGATTCATTCAGATCAACAGCGAGATCGCCA 840
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 TGGGCGCGAGCATCTTCCCCATCTCGAACATCGCCGGCTCACAGTATGATATCAGTATTC 900
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 TGATCTGGAAGGACCCAAAGGAAGGAAACTGGTGGATGCAGTTCGGCAGGGAGTATGTCC 960
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 TCGGCTACTGGCCGTCCTTCCTCTTCTCCTACCTCGTCGACAGTGCGTCGATGGTCGAGT 1020
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 GGGGCGGGGAGGTGGTGAACTCGGAGCCCGACGGCACGCACACGTCGACGCAGATGGGGA 1080
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 GCGGGCGGTTCCCGGAGGAAGGGTTCGGCAAGGCGAGCTACTTCAAGAACATCCAGGTGG 1140
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 TGGACAGCAGCAACCAGCTGAAGGCCCCCAAGGGGGTGGGCACCTACACCGAGCAGTCCA 1200
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 ATTGCTACGATGTTCAGAACGGCAACAATGGCGACTGGGGCACCTACTTCTACTATGGCG 1260
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 ------------------------------------------------------------
consensus_12196#0 GCCCGGGGAAGAACTCGAATTGCCCATGAATTTGGTGATGAAGAAGCTGATGATATATAT 1320
consensus_12196#2 ------------------------------------------------------------
consensus_12196#1 -----------------------------------------------------------T 1
consensus_12196#0 ATATTTATATATATATATATAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATC 1380
consensus_12196#2 ------------------------------------------------CAAGCATTAATC 12
consensus_12196#1 ATATTTATATATATATATATAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATC 61
************
consensus_12196#0 ATGTGTGGAATACAGATTGATCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGT 1440
consensus_12196#2 ATGTGTGGAATACAGATTGANCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGT 72
consensus_12196#1 ATGTGTGGAATACAGATTGATCTNCATNTGTTTCTTAATTTAGCCCTAGGTAGTATATGT 121
******************** ** *** ********************************
consensus_12196#0 GTATCTTTCCTACTGATTTTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCT 1500
consensus_12196#2 GTATCTTTCCTACTGATTNTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCT 132
consensus_12196#1 GTATCTTTCCTACTGATTTTCTTTTTNNTCTCTTCATTAGTTTTTTCTTCTNCTTTTTCT 181
****************** ******* *********************** ********
consensus_12196#0 GATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGA 1560
consensus_12196#2 GATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGA 192
consensus_12196#1 NATGTGCCATNTAAAAGTTTNTNAANNGANGCNTGGNTTGNGGTGGTGGTNCAGGGGTGG 241
********* ********* * ** ** ** *** ** ********* ********
consensus_12196#0 TGATGACAATTGATTTGTGGGTAATTTGCAAGTCAAAAAAAAAAAAAAAAAAAA--- 1614
consensus_12196#2 TGATGACAA------------------AAAAAAAAAAAAAACAAAAAAAAAAAA--- 228
consensus_12196#1 TNATGACAATTGATTTGTNGGTAATTTGCAATGTNNAAANNAAAANAAATATAAAAA 298
* ******* ** *** *** *** * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||