These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1614 fasta sequence [AAAAGAGAGAAGGTGAGCTGAGCTGAGCTGAGGTGAAGTGGTGCTGAGGCGAGTGACTGGGGGGCAATGGCAGCGGCGTGGGTGCTGGCCGCGGCGGCGGCGTTGGCGCTGTGGGCGGCGGCGGCGGAGGGGGCAAGGTCGCCGGCGGCGAGGGTGCACCGGCACCTCAAGAGGCTCAACAAGCCGGCCGTCAAGAGCATCGAGAGCCCAGATGGAGACATCATCGACTGCGTGCATCTCTCTCACCAACCAGCATTTGATCATCCCCTACTCAAGAACCATACTCTCCAGATGAGGCCGGCCTACCACCCTGAAGGCTTGTATGATGATGACAAGAGAAGCGTGGCCTCTGACAATGCCGGCGAGAAGCCGATGCTCCAGCTATGGCATCAAAAGGGGAGGTGCCCGGA---CTCC-NCNCGA-TCAGGAGAACGAAGAAGGATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGAAACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTCACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGCCACCATTAATGTGT-GGGAGCCCAAGATTCAGCAGCCTAACGAGTT-CAGCC-TGTCCCAGCTCTGGATC-TTGGGGGGTTCATTTGGTGAGGATCTCAACAGCATCGAGGCCGGGTGGCAGGTCAGCCCAGACCTCTATGGAGATAATAACACTAGGCTGTTCACATACTGGACTAGTGATGCTTACCAAGCAACAGGGTGCTACAACATATTGTGCTCCGGATTCATTCAGATCAACAGCGAGATCGCCATGGGCGCGAGCATCTTCCCCATCTCGAACATCGCCGGCTCACAGTATGATATCAGTATTCTGATCTGGAAGGACCCAAAGGAAGGAAACTGGTGGATGCAGTTCGGCAGGGAGTATGTCCTCGGCTACTGGCCGTCCTTCCTCTTCTCCTACCTCGTCGACAGTGCGTCGATGGTCGAGTGGGGCGGGGAGGTGGTGAACTCGGAGCCCGACGGCACGCACACGTCGACGCAGATGGGGAGCGGGCGGTTCCCGGAGGAAGGGTTCGGCAAGGCGAGCTACTTCAAGAACATCCAGGTGGTGGACAGCAGCAACCAGCTGAAGGCCCCCAAGGGGGTGGGCACCTACACCGAGCAGTCCAATTGCTACGATGTTCAGAACGGCAACAATGGCGAC-TGGGGCACCTAC-TTCTACTATGGCGGCCCGGGGAAGAAC-TCGAATTGCCCATGAATTTGGTGATGAAGAAGCTGATGATATATATATATTTATATATATATATATAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATCATGTGTGGAATACAGATTGATCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTTTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCTGATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGATGATGACAATTGATTTGTGGGTAATTTGCAAGTCAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK103449 [AAAAGAGAGAAGGTGAGCTGAGCTGAGCTGAGGTGAAGTGGTGCTGAGGCGAGTGACTGGGGGGCAATGGCAGCGGCGTGGGTGCTGGCCGCGGCGGCGGCGTTGGCGCTGTGGGCGGCGGCGGCGGAGGGGGCAAGGTCGCCGGCGGCGAGGGTGCACCGGCACCTCAAGAGGCTCAACAAGCCGGCCGTCAAGAGCATCGAGAGCCCAGATGGAGACATCATCGACTGCGTGCATCTCTCTCACCAACCAGCATTTGATCATCCCCTACTCAAGAACCATACTCTCCAGATGAGGCCGGCCTACCACCCTGAAGGCTTGTATGATGATGACAAGAGAAGCGTGGCCTCTGACAATGCCGGCGAGAAGCCGATGCTCCAGCTATGGCATCAAAAGGGGAGGTGCCCGGAGGGCACCGTCCCGA TCAGGAGAACGAAGAAGGATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGAAACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTCACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGCCACCATTAATGTGT GGGAGCCCAAGATTCAGCAGCCTAACGAGTT CAGCC TGTCCCAGCTCTGGATC TTGGGGGGTTCATTTGGTGAGGATCTCAACAGCATCGAGGCCGGGTGGCAGGTCAGCCCAGACCTCTATGGAGATAATAACACTAGGCTGTTCACATACTGGACTAGTGATGCTTACCAAGCAACAGGGTGCTACAACATATTGTGCTCCGGATTCATTCAGATCAACAGCGAGATCGCCATGGGCGCGAGCATCTTCCCCATCTCGAACATCGCCGGCTCACAGTATGATATCAGTATTCTGATCTGGAAGGACCCAAAGGAAGGAAACTGGTGGATGCAGTTCGGCAGGGAGTATGTCCTCGGCTACTGGCCGTCCTTCCTCTTCTCCTACCTCGTCGACAGTGCGTCGATGGTCGAGTGGGGCGGGGAGGTGGTGAACTCGGAGCCCGACGGCACGCACACGTCGACGCAGATGGGGAGCGGGCGGTTCCCGGAGGAAGGGTTCGGCAAGGCGAGCTACTTCAAGAACATCCAGGTGGTGGACAGCAGCAACCAGCTGAAGGCCCCCAAGGGGGTGGGCACCTACACCGAGCAGTCCAATTGCTACGATGTTCAGAACGGCAACAATGGCGAC TGGGGCACCTAC TTCTACTATGGCGGCCCGGGGAAGAAC TCGAATTGCCCATGAATTTGGTGATGAAGAAGCTGATGATATATATATATTTATATATATATATATAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATCATGTGTGGAATACAGATTGATCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTTTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCTGATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGATGATGACAATTGATTTGTGGGTAA ] [+] EMBL OSS4271A [ AAGCGTGGCCTCTGACAATGCCGGCGAGAAGCCGATGCTCCAGCTATGGCATCAAAAGGGGAGGTGCCCGGA CTCC NCNCGANTCAGGAGAACGAAGAAGGATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGAAACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTCACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGNCACCATTAATGTGT GGGGGNCCAAGATTCAGCAGNCTTACGGGTTNAAGCCTTTTCCCAGTTTTGGATCTTTGGGGGGTT ] [+] EMBL OSS2826A [ AAGCGTGGCCTCTGACAATGCCGGCGAGAAGCCGATGCTCCAGCTATGGCATCAAAAGGGGAGGTGCCCGGA CTNC NCNNGANTCAGGAGAACGAAGAAGGATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGAAACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTCACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGCCACCATTAATGTGTGGGGAGCCCAAGATTCAGCAGCCTAACGAGTT CAGCC TGTCCCAGCTC ] [+] EMBL OSS15575A [ AGGATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGAAACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTCACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGCCACCATTAATGTGT GGGAGCCCAAGATTCAGCAGCCTAACGAGTT CAGCC TGTCCCAGCTCTGGATC TTGGGGGGTTCATTTGGTGAGGATCTCAACAGCATCGAGGCCGGGTGGCAGGTCAGCCCAGACCTCTATGGAGATAATAACACTAGGCTGTTCACATACTGGACTAGTGATGCTTACCAAGCAACAGGGTGCTACAACATATTGTGCTCCGGATTCATTCAGATCAACAGCGAGATCGCCATGGGNGCGAGATTCTTNCCCATCTCGGACATCGCCGGNTCACAGTATGGTATCAGTATTCTGATCT ] [+] EMBL C74751 [ ATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGAAACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTCACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGCCACCATTAATGTGT GGGAGCCCAAGATTCAGCAGCCTAACGAGTT CAGCC TGTCCCAGCTCTGGATC TTGGGGGGTTCATTTGGTGAGGATCTCAACAGCATCGAGGCCGGGTGGCAGGTCAGCCCAGACCTCTATGGAGATAATAACACTAGGCTGTTCACATACTGGACTAGTGATGCTTACCAAGCAACANGGTGCTACAACATATTGTGCTCCGGA TCATTCAG ] [+] EMBL AU198077 [ TTCATTCAGATCAACAGCGAGATCGCCATGGGCGCGAGCATCTTCCCCATCTCGAACATCGCCGGCTCACAGTATGATATCAGTATTCTGATCTGGAAGGACCCAAAGGAAGGAAACTGGTGGATGCAGTTCGGCAGGGAGTATGTCCTCGGCTACTGGCCGTCCTTCCTCTTCTCCTACCTCGTCGACAGTGCGTCGATGGTCGAGTGGGGCGGGGAGGTGGTGAACTCGGAGCCCGACGGCACGCACACGTCGACGCAGATGGGGAGCGGGCGGTTCCCGGAGGAAGGGTTCGGCAAGGCGAGCTACTTCAAGAACATCCAGGTGGTGGACAGCAGCAACCAGCTGAAGGCCCCCAAGGGGGTGGGCACCTACACCGAGCAGTCCAATTGCTACGATGTTCAGAACGGCAACAATGGCGAC TGGGGCACCTAC Tc ] [+] EMBL AU064337 [ TCGATGGTCGAGTGGGGCGGGGAGGTGGTGAACTCGGAGCCCGACGGCACGCACACGTCGACGCAGATGGGGAGCGGGCGGTTCCCGGAGGAAGGGTTCGGCAAGGCGAGCTACTTCAAGAACATCCAGGTGGTGGACAGCAGCAACCAGCTGAAGGCCCCCAAGGGGGTGGGCACCTACACCGAGCAGTCCAATTGCTACGATGTTCAGAACGGCAACAATGGCGACTTGGGGCAACTACTTTCTACTATGGCGGCCCGGGGAAGAACTTCGATTTGCCCATGA ] [+] EMBL AU097375 [ TAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATCATGTGTGGAATACAGATTGATCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTTTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCTGATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGATGATGACAATTGATTTGTGGGTAATTTGCAAGTCAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [TATATTTATATATATATATATAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATCATGTGTGGAATACAGATTGATCTNCATNTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTTTCTTTTTNNTCTCTTCATTAGTTTTTTCTTCTNCTTTTTCTNATGTGCCATNTAAAAGTTTNTNAANNGANGCNTGGNTTGNGGTGGTGGTNCAGGGGTGGTNATGACAATTGATTTGTNGGTAATTTGCAATGTNNAAANNAAAANAAATATAAAAA] [+] EMBL AU097207 [TATATTTATATATATATATATAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATCATGTGTGGAATACAGATTGATCTNCATNTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTTTCTTTTTNNTCTCTTCATTAGTTTTTTCTTCTNCTTTTTCTNATGTGCCATNTAAAAGTTTNTNAANNGANGCNTGGNTTGNGGTGGTGGTNCAGGGGTGGTNATGACAATTGATTTGTNGGTAATTTGCAATGTNNAAANNAAAANAAATATAAAAA] consensusID : consensus_12196#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [CAAGCATTAATCATGTGTGGAATACAGATTGANCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTNTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCTGATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGATGATGACAAAAAAAAAAAAAAAACAAAAAAAAAAAA] [+] EMBL AU164249 [CAAGCATTAATCATGTGTGGAATACAGATTGANCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTNTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCTGATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGATGATGACAAAAAAAAAAAAAAAACAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12196#0 AAAAGAGAGAAGGTGAGCTGAGCTGAGCTGAGGTGAAGTGGTGCTGAGGCGAGTGACTGG 60 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 GGGGCAATGGCAGCGGCGTGGGTGCTGGCCGCGGCGGCGGCGTTGGCGCTGTGGGCGGCG 120 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 GCGGCGGAGGGGGCAAGGTCGCCGGCGGCGAGGGTGCACCGGCACCTCAAGAGGCTCAAC 180 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 AAGCCGGCCGTCAAGAGCATCGAGAGCCCAGATGGAGACATCATCGACTGCGTGCATCTC 240 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 TCTCACCAACCAGCATTTGATCATCCCCTACTCAAGAACCATACTCTCCAGATGAGGCCG 300 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 GCCTACCACCCTGAAGGCTTGTATGATGATGACAAGAGAAGCGTGGCCTCTGACAATGCC 360 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 GGCGAGAAGCCGATGCTCCAGCTATGGCATCAAAAGGGGAGGTGCCCGGACTCCNCNCGA 420 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 TCAGGAGAACGAAGAAGGATGATCTGCTCAGAGCGAGCTCGTTGCGGCGGTATGGCAGGA 480 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 AACGGCATACCGCCGTGAACCCGCTGTCCATTGATCCCAACATGCTCAATGAGGGTGGTC 540 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 ACCAACATGCCATAGCGTATGTGGAGGGGGATAAGTACTATGGTGCCAAGGCCACCATTA 600 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 ATGTGTGGGAGCCCAAGATTCAGCAGCCTAACGAGTTCAGCCTGTCCCAGCTCTGGATCT 660 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 TGGGGGGTTCATTTGGTGAGGATCTCAACAGCATCGAGGCCGGGTGGCAGGTCAGCCCAG 720 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 ACCTCTATGGAGATAATAACACTAGGCTGTTCACATACTGGACTAGTGATGCTTACCAAG 780 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 CAACAGGGTGCTACAACATATTGTGCTCCGGATTCATTCAGATCAACAGCGAGATCGCCA 840 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 TGGGCGCGAGCATCTTCCCCATCTCGAACATCGCCGGCTCACAGTATGATATCAGTATTC 900 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 TGATCTGGAAGGACCCAAAGGAAGGAAACTGGTGGATGCAGTTCGGCAGGGAGTATGTCC 960 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 TCGGCTACTGGCCGTCCTTCCTCTTCTCCTACCTCGTCGACAGTGCGTCGATGGTCGAGT 1020 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 GGGGCGGGGAGGTGGTGAACTCGGAGCCCGACGGCACGCACACGTCGACGCAGATGGGGA 1080 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 GCGGGCGGTTCCCGGAGGAAGGGTTCGGCAAGGCGAGCTACTTCAAGAACATCCAGGTGG 1140 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 TGGACAGCAGCAACCAGCTGAAGGCCCCCAAGGGGGTGGGCACCTACACCGAGCAGTCCA 1200 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 ATTGCTACGATGTTCAGAACGGCAACAATGGCGACTGGGGCACCTACTTCTACTATGGCG 1260 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 ------------------------------------------------------------ consensus_12196#0 GCCCGGGGAAGAACTCGAATTGCCCATGAATTTGGTGATGAAGAAGCTGATGATATATAT 1320 consensus_12196#2 ------------------------------------------------------------ consensus_12196#1 -----------------------------------------------------------T 1 consensus_12196#0 ATATTTATATATATATATATAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATC 1380 consensus_12196#2 ------------------------------------------------CAAGCATTAATC 12 consensus_12196#1 ATATTTATATATATATATATAATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATC 61 ************ consensus_12196#0 ATGTGTGGAATACAGATTGATCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGT 1440 consensus_12196#2 ATGTGTGGAATACAGATTGANCTGCATCTGTTTCTTAATTTAGCCCTAGGTAGTATATGT 72 consensus_12196#1 ATGTGTGGAATACAGATTGATCTNCATNTGTTTCTTAATTTAGCCCTAGGTAGTATATGT 121 ******************** ** *** ******************************** consensus_12196#0 GTATCTTTCCTACTGATTTTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCT 1500 consensus_12196#2 GTATCTTTCCTACTGATTNTCTTTTTCTTCTCTTCATTAGTTTTTTCTTCTTCTTTTTCT 132 consensus_12196#1 GTATCTTTCCTACTGATTTTCTTTTTNNTCTCTTCATTAGTTTTTTCTTCTNCTTTTTCT 181 ****************** ******* *********************** ******** consensus_12196#0 GATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGA 1560 consensus_12196#2 GATGTGCCATGTAAAAGTTTCTGAAGAGAAGCATGGCGTGAGGTGGTGGTGCAGGGGTGA 192 consensus_12196#1 NATGTGCCATNTAAAAGTTTNTNAANNGANGCNTGGNTTGNGGTGGTGGTNCAGGGGTGG 241 ********* ********* * ** ** ** *** ** ********* ******** consensus_12196#0 TGATGACAATTGATTTGTGGGTAATTTGCAAGTCAAAAAAAAAAAAAAAAAAAA--- 1614 consensus_12196#2 TGATGACAA------------------AAAAAAAAAAAAAACAAAAAAAAAAAA--- 228 consensus_12196#1 TNATGACAATTGATTTGTNGGTAATTTGCAATGTNNAAANNAAAANAAATATAAAAA 298 * ******* ** *** *** *** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||