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Oryza sativa
cluster # 12202 cluster # 12202       Sequences # 10       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12202#0 length = 1197 sequences # 4  
consensus_12202#1 length = 791 sequences # 4  
consensus_12202#2 length = 625 sequences # 1  
consensus_12202#3 length = 555 sequences # 1  

consensusID : consensus_12202#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1197
fasta sequence
                              [TGTTCCTAGTGGCACACTCTCCACACCAGCAGTTAGGCATCTAGCAAAGCAGTATGGGCTCAACATAAGTGATATTCAGGGAACAGGAAAAGATGGTAGAGTTTTGAAAGAAGATGTTCTGAGTTATGCTGCCAGCAAGGGTCTTTGCAAAGAACCGACATCAGCTTTGGAAGAGAACATTGATCAAGTGGAGTTACTGGAGGGAAGGGGATCATTACCCGATGCTAACTCTTATGAAGATAGAAGAATTTCTCTCAGGGGCTACCAGAGGTCAATGGTCAAATCAATGACCCTGGCTGCAAAAGTACCACATTTTCATTATCTGGAGGAAATAAACTGTGATGCTCTTGTGGAACTTAAGGCATCCTTTCAAAATGCGAATAAAGATCATACTATCAAGCACACCTTCCTACCATTCCTCATAAAGTCTCTTTCTAAGGCACTGAGTAAATACCCTTTGTTGAACAGTTGTTTTGTTGAGGAAACCAATGAAGTTATTTTCAAAGGATCCCATAACATTGGGGTAGCTATGGCTACAGAACATAGATTAGTGGTGCCAAACATCAAGAATGTTCAATCGCTTTCAATATTGGAGATCACAAAAGAATTGTCACGTCTACATGAGATGGCATCGCACAACAGGCTGAGCACAGAAGATATTGCTGGTGGAACCATAACACTA-AGCAACATA-GGCGCCATTGGTGGCAAGTTTGGCTCTCCGC-TTCTCAACTTGCCTGAAGTTGCCATTATTGC-ACTCGGACGCATTCAAAAACTTCCTCGCTTTGATGATGATGAAAATGTTTATCCTTCCTCAATAATCAATGTGACTGTTGGAGCTGATCACCGAGTTGTTGACGGCGCCACCGTTG-CAAGGTTCTGTAATGAGT-GGAAAAG-CCTTGTGGAG-AAG-CCAGAACGGCTATTGCTGCATATGCGATGATCCAATTGGATATCTGATGCA-GGCGAGGGCAGACCA-TTTG-CA-CA-GGTGCTCTGAAAGCCTGAAAACA-CAGGCA-ATCTGGCATGATCG-CATGGAGATTTCGTACTGTAAGCCTATGAAATCTTTTTGCTGGA-CAAAGAATCTGTCAAGTAAATATTTATATGAATGTAGTGAGCTGA-CAGTG-CAATGGCA-CACTGTGT-AAAATAATT-CT-A-CCA-CA-CT-GGAATAAAGCA-GGGAATTGTTCCCCAAAAGAAAAAAAAAAAAAA]

[+] EMBL AK067157             [TGTTCCTAGTGGCACACTCTCCACACCAGCAGTTAGGCATCTAGCAAAGCAGTATGGGCTCAACATAAGTGATATTCAGGGAACAGGAAAAGATGGTAGAGTTTTGAAAGAAGATGTTCTGAGTTATGCTGCCAGCAAGGGTCTTTGCAAAGAACCGACATCAGCTTTGGAAGAGAACATTGATCAAGTGGAGTTACTGGAGGGAAGGGGATCATTACCCGATGCTAACTCTTATGAAGATAGAAGAATTTCTCTCAGGGGCTACCAGAGGTCAATGGTCAAATCAATGACCCTGGCTGCAAAAGTACCACATTTTCATTATCTGGAGGAAATAAACTGTGATGCTCTTGTGGAACTTAAGGCATCCTTTCAAAATGCGAATAAAGATCATACTATCAAGCACACCTTCCTACCATTCCTCATAAAGTCTCTTTCTAAGGCACTGAGTAAATACCCTTTGTTGAACAGTTGTTTTGTTGAGGAAACCAATGAAGTTATTTTCAAAGGATCCCATAACATTGGGGTAGCTATGGCTACAGAACATAGATTAGTGGTGCCAAACATCAAGAATGTTCAATCGCTTTCAATATTGGAGATCACAAAAGAATTGTCACGTCTACATGAGATGGCATCGCACAACAGGCTGAGCACAGAAGATATTGCTGGTGGAACCATAACACTA AGCAACATA GGCGCCATTGGTGGCAAGTTTGGCTCTCCGC TTCTCAACTTGCCTGAAGTTGCCATTATTGC ACTCGGACGCATTCAAAAACTTCCTCGCTTTGATGATGATGAAAATGTTTATCCTTCCTCAATAATCAATGTGACTGTTGGAGCTGATCACCGAGTTGTTGACGGCGCCACCGTTG CAAGGTTCTGTAATGAGT GGAAAAG CCTTGTGGAG AAG CCAGAACGGCTATTGCTGCATATGCGATGATCCAATTGGATATCTGATGCA GGCGAGGGCAGACCA TTTG CA CA GGTGCTCTGAAAGCCTGAAAACA CAGGCA ATCTGGCATGATCG CATGGAGATTTCGTACTGTAAGCCTATGAAATCTTTTTGCTGGA CAAAGAATCTGTCAAGTAAATATTTATATGAATGTAGTGAGCTGA CAGTG CAATGGCA CACTGTGT AAAATAATT CT A CCA CA CT GGAATAAAGCA GGG                              ]
[+] EMBL CA764725             [                                                                                                                                                    AAAGAACCGACATCAGCTTTGGAAGAGAACATTGATCAAGTGGAGTTACTGGAGGGAAGGGGATCNTTACCCGATGCTAACTCTTATGAAGATAGAAGAATTTCTCTCAGGGGCTACCAGAGGTCAATGGTCAAATCAATGACCCTGGCTGCAAAAGTACCACATTTTCATTATCTGGAGGAAATAAACTGTGATGCTCTTGTGGAACTTAAGGCATCCTTTCAAAATGCGAATAAAGATCATACTATCAAGCACACCTTCCTACCATTCCTCATAAAGTCTCTTTCTAAGGCACTGAGTAAATACCCTTTGTTGAACAGTTGTTTTGTTGAGGAAACCAATGAAGTTATTTTCAAAGGATCCCATAACATTGGGGTAGCTATGGCTACAGAACATGGATTAGTGGTTCCAAACATCAAGAATGTTCAATCGCTTTCAATATTGGAGATCACAAAAGAATTGTCACGTCTACATGAGATGGCATCGCACAACAGGCTGAGCACAGAAGATATTGCTGGTGGAACCATAACACTA AGCAACATA GGCGCCATTGGTGGCAAGTTTGGCTCTCCGC TTCTCAACTTGCCTGAAGTTGCCATTATTGC ACTCGGACGCATTCAAAAACTTCCTCGCTTTGATGATGATGAAAATGTTTATCCTTCCTCAATAATCAATGTGACTGTTGGAGCTGATCACCGAGTTGTTGACGGCGCCACCGTTG CAAGGTTCTGTAATGAGT GGAAAAG CCTTGTGGAGNAAG CCAGAACTGCTATTGCTGCATATGCGATGATCCAA                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM419485             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATAACNCTATAGCAACATATGGCGCCCTTGGTGGCAAGTTTGGCTCTCCGCGTTCTCAACTTGCCTGAAGTTGCCCTTATTGCAACTCGGACGCATTCAAAAACTTCCTCGCTTTGATGATGATGAAAATGTTTATCCTTCCTCAATAATCAATGTGACTGTTGGAGCTGATCACCGAGTTGTTGACGGCGCCCCCGTTGCCAAGGTTCTGTAATGAGTGGGAAAAGCCCTTGTGGAG AAGCCCAGAACTGCTATTGCTGCATATGCGATGATCCCATTGGATATCTGATGCACGGCGAGGGCAGACCACTTTGCCACCACGGTGCTCTGAAAGCCTGAAAACACCAGGCACATCTGGCATGATCGCCATGGAGATTTCGTACTGTAAGCCTATGAAATCTTTTTGCTGGACCCAAGAATCTGTCAAGTAAATATTTATATGAATGTAGTGAGCTGACCAGTGCCAATGGCACCACTGTGTGAAAATAATTGCTGACCCACCACCTGGGAATAAACCACGGGAATTGTTCCCCAAAAG              ]
[-] EMBL CF308642             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGGTTCTGTAATGAGT GGAAAAC CCTTGTGGAG AAG CCAGACCGGCTATTGCTGCATATGCGATGATCCAATTGGATATTTGATGCA GGCGAGGGCAGCCCA TTTG CA CA GGTGTTTTGAAAGCCTGAAAACA CAGCCA ATTTGGCATGATCG CATGGAGATTTCGTACTGTAAGCCTATGAAATCTTTTTGCTGGA CAAAGAATCTGTCAAGTAAATATTTATATGAATGTAGTGAGCTGC CAGTG CAATGGCC CACTGTGT AAAATAATT CT C CCC CA CT GGAATAAAGCA GGGAATTGTTCCCAAAAAAAAAAAAAAAAAAAA]


>consensus_12202#0 TGTTCCTAGTGGCACACTCTCCACACCAGCAGTTAGGCATCTAGCAAAGCAGTATGGGCT CAACATAAGTGATATTCAGGGAACAGGAAAAGATGGTAGAGTTTTGAAAGAAGATGTTCT GAGTTATGCTGCCAGCAAGGGTCTTTGCAAAGAACCGACATCAGCTTTGGAAGAGAACAT TGATCAAGTGGAGTTACTGGAGGGAAGGGGATCATTACCCGATGCTAACTCTTATGAAGA TAGAAGAATTTCTCTCAGGGGCTACCAGAGGTCAATGGTCAAATCAATGACCCTGGCTGC AAAAGTACCACATTTTCATTATCTGGAGGAAATAAACTGTGATGCTCTTGTGGAACTTAA GGCATCCTTTCAAAATGCGAATAAAGATCATACTATCAAGCACACCTTCCTACCATTCCT CATAAAGTCTCTTTCTAAGGCACTGAGTAAATACCCTTTGTTGAACAGTTGTTTTGTTGA GGAAACCAATGAAGTTATTTTCAAAGGATCCCATAACATTGGGGTAGCTATGGCTACAGA ACATAGATTAGTGGTGCCAAACATCAAGAATGTTCAATCGCTTTCAATATTGGAGATCAC AAAAGAATTGTCACGTCTACATGAGATGGCATCGCACAACAGGCTGAGCACAGAAGATAT TGCTGGTGGAACCATAACACTAAGCAACATAGGCGCCATTGGTGGCAAGTTTGGCTCTCC GCTTCTCAACTTGCCTGAAGTTGCCATTATTGCACTCGGACGCATTCAAAAACTTCCTCG CTTTGATGATGATGAAAATGTTTATCCTTCCTCAATAATCAATGTGACTGTTGGAGCTGA TCACCGAGTTGTTGACGGCGCCACCGTTGCAAGGTTCTGTAATGAGTGGAAAAGCCTTGT GGAGAAGCCAGAACGGCTATTGCTGCATATGCGATGATCCAATTGGATATCTGATGCAGG CGAGGGCAGACCATTTGCACAGGTGCTCTGAAAGCCTGAAAACACAGGCAATCTGGCATG ATCGCATGGAGATTTCGTACTGTAAGCCTATGAAATCTTTTTGCTGGACAAAGAATCTGT CAAGTAAATATTTATATGAATGTAGTGAGCTGACAGTGCAATGGCACACTGTGTAAAATA ATTCTACCACACTGGAATAAAGCAGGGAATTGTTCCCCAAAAGAAAAAAAAAAAAAA



consensusID : consensus_12202#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 791
fasta sequence
                              [AAAGATCATACTATCAAGCACACCTTCCTACCATTCCTCATAAAGTCTCTTTCTAAGGCACTGAGTAAATATAAGGCATCCTTTCAACCCTTTGTTGAACAGTTGTTTTGTTGAGGAAACCAATGAAGTTATTTTCAAAGGATCCCATAACATTGGGGTAGCTATGGCTACAGAACATGGATTAGTGGTGCCAAACATCAAGAATGTTCAATCGCTTT-AATATTGGAGGTAGCCACTAGCCAACAACTGTTTTTTATATGTAAATTCATGAGTATTTCCTCACTTTTCTGAAATTTCAATTCTCTTACATGTTTGCATTCAAAGTCAACTGTAGTTTCACGGCTGCTAGGAAAAATGAGAAACATAAAAATCCTCTGGAAAAAATTCAATCCTCAATGTAATGGACCATACTTAACTATTGGATACTCTTAGGAGGACTGATTTAAATCTAAACGGTAGAAAAGAATTTTTGGAAGATGGAAACAAATATTATATTTAGGGAAAGAAAGAGAGAAAAAACACTACCATGTCAATCATGTT-TCGTCGTTTTATATGCTAACATTTGGAGTAAAGAAATACAAGGTTCAAAGGAGCTCCCTTCGAAGACAAATCATAGCCAAAGAAGAAACTATCTCTGATTGTCTTCTTTGCAACCAATTTCTTACACCACGCCATGCAACTAACTAGTCATACTGAATTTCTTTAATTNTTTAGTAGATATTTTATAAAAAAAAATTGGCGGTTCATATTTCTGATTGTTCTCATTGATTTTTAGTACAATTATTTGGTAA]

[+] EMBL AA749716             [AAAGATCATACTATCAAGCACACCTTCCTACCATTCCTCATAAAGTCTCTTTCTAAGGCACTGAGTAAATATAAGGCATCCTTTCAACCCTTTGTTGAACAGTTGTTTTGTTGAGGAAACCAATGAAGTTATTTTCAAAGGATCCCATAACATTGGGGTAGCTATGGCCA AGAACATGGATTAGTGGTTCCAAACATCAAGAATGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF303796             [                                                                                                                                                            GGTAGCTATGGCTACAGAACATGGATTAGTGGTGCCAAACATCAAGAATGTTCAATCGCTTT AATATTGGAGGTAGCCACTAGCCAACAACTGTTTTTTATATGTAAATTCATGAGTATTTCCTCACTTTTCTGAAATTTCAATTCTCTTACATGTTTGCATTCAAAGTCAACTGTAGTTTCACGGCTGCTAGGAAAAATGAGAAACATAAAAATCCTCTGGAAAAAATTCAATCCTCAATGTAATGGACCATACTTAACTATTGGATACTCTTAGGAGGACTGATTTAAATCTAAACGGTAGAAAAGAATTTTTGGAAGATGGAAACAAATATTATATTTAGGGAAAGAAAGAGAGAAAAAACACTACCATGTCAATCATGTT TCGTCGTTTTATATGCTAACATTTGGAGTAAAGAAATACAAGGTTCAAAGGAGCTCCCTTCGAAGACAAATCATAGCCAAAGAAGAAACTATCTCTGATTGTCTTCTTTGCAACCAATTTCTTACACCACGCCATGCAACTAACTAGTCATACTGAATTTCTTTAATTNTTTAGTAGATATTTTATAAAAAAAAATTGGCGGTTCATATTTCTGATTGTTCTCATTGATTTTTAGTACAATTATTTGGTAA]
[+] EMBL CF305096             [                                                                                                                                                            GGTAGCTATGGCTACAGAACATGGATTAGTGGTGCCAAACATCAAGAATGTTCAATCGCTTTCAATATTGGAGGTAGCCACTAGCCAACAACTGTTTTTTATATGTAAATTCATGAGTATTTCCTCACTTTTCTGAAATTTCAATTCTCTTACATGTTTGCATTCAAAGTCAACTGTAGTTTCACGGCTGCTAGGAAAAATGAGAAACATAAAAATCCTCTGGAAAAAATTCAATCCTCAATGTAATGGACCATACTTAACTATTGGATACTCTTAGGAGGACTGATTTAAATCTAAACGGTAGAAAAGAATTTTTGGAAGATGGAAACAAATATTATATTTAGGGAAAGAAAGAGAGAAAAAACACTACCATGTCAATCATGTT TCGTCGTTTTATATGCTAACATTTGGAGTAAAGAAATACAAGGTTCAAAGGAGCTCCCTTCGAAGACAAATCATAGCCAAAGAAGAAACTATCTCTGATTGTCTTCTTTGCAACCAATTTCTTACACCACGCCATGCAACTAACTAGTCATACTGAATTTCTTTAATTNTTTAGTAGATATTTTATAAAAAAAAATTGGCGGTTCATATTTCTGATTGTTCTCATTGATTTTTAGTACA            ]
[+] EMBL CF304042             [                                                                                                                                                            GGTAGCTATGGCTACAGAACATGGATTAGTGGTGCCAAACATCAAGAATGTTCAATCGCTTT AATATTGGAGGTAGCCACTAGCCAACAACTGTTTTTTATATGTAAATTCATGAGTATTTCCTCACTTTTCTGAAATTTCAATTCTCTTACATGTTTGCATTCAAAGTCAACTGTAGTTTCACGGCTGCTAGGAAAAATGAGAAACATAAAAATCCTCTGGAAAAAATTCAATCCTCAATGTAATGGACCATACTTAACTATTGGATACTCTTAGGAGGACTGATTTAAATCTAAACGGTAGAAAAGAATTTTTGGAAGATGGAAACAAATATTATATTTAGGGAAAGAAAGAGAGAAAAAACACTACCATGTCAATCATGTTNTCGTCGTTTTATATGCTAACATTTGGAGTAAAGAAATACAAGGTTCAAAGGAGCTCCCTTCGAAGACAAATCATAGCCAAAGAAGAAACTATCTCTGATTGTCTTCTTTGCAACCAATTTCTTACACCACGCCATGCAACTAACTAGTCATACTGAA                                                                                              ]


>consensus_12202#1 AAAGATCATACTATCAAGCACACCTTCCTACCATTCCTCATAAAGTCTCTTTCTAAGGCA CTGAGTAAATATAAGGCATCCTTTCAACCCTTTGTTGAACAGTTGTTTTGTTGAGGAAAC CAATGAAGTTATTTTCAAAGGATCCCATAACATTGGGGTAGCTATGGCTACAGAACATGG ATTAGTGGTGCCAAACATCAAGAATGTTCAATCGCTTTAATATTGGAGGTAGCCACTAGC CAACAACTGTTTTTTATATGTAAATTCATGAGTATTTCCTCACTTTTCTGAAATTTCAAT TCTCTTACATGTTTGCATTCAAAGTCAACTGTAGTTTCACGGCTGCTAGGAAAAATGAGA AACATAAAAATCCTCTGGAAAAAATTCAATCCTCAATGTAATGGACCATACTTAACTATT GGATACTCTTAGGAGGACTGATTTAAATCTAAACGGTAGAAAAGAATTTTTGGAAGATGG AAACAAATATTATATTTAGGGAAAGAAAGAGAGAAAAAACACTACCATGTCAATCATGTT TCGTCGTTTTATATGCTAACATTTGGAGTAAAGAAATACAAGGTTCAAAGGAGCTCCCTT CGAAGACAAATCATAGCCAAAGAAGAAACTATCTCTGATTGTCTTCTTTGCAACCAATTT CTTACACCACGCCATGCAACTAACTAGTCATACTGAATTTCTTTAATTNTTTAGTAGATA TTTTATAAAAAAAAATTGGCGGTTCATATTTCTGATTGTTCTCATTGATTTTTAGTACAA TTATTTGGTAA



consensusID : consensus_12202#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence
                              [GGAATAANAGTCTTGGGGTATACGCCCTTNGGCAAGGGTGTACCACTGGGTGCCGGGGGATATTGCCCCCGGGGTGCATGACCCACTAACTGGCTAGTGCACAGCTTGTGCACGTGCATATGATGAGATTGCCATATATTGTGTGTGAANCGTGGTGTGGGAGCTGGATGCATCCGAGTTTTGTTTGACAGGGCAGCACACACGTTTGGCCAAGGTTTCTGGTAAATGGATTGGGAAAAAGCCACTTGTGGAGTAAAGNCCTTAGATCTGGCCTTATTGGCCTCGCAATAATGCCGGATGGAATGCCCAACATGTGGGATAATGCCTGAATGGCCAGGGCCAGGGCAGACCCTATGGTGTGGCACCGGGTGGCTGCCTGGATATACCGCCCTGGAATAACCACCGGGCANATGCTGGGGCATGGATGCCGGCATGGGAGGATTTTGCNTGACCTGGTGATACGCCCTGATGGAATATGCTGTTTGTGGCTGGGACCAAAGAATGCTGNTGCAAGGTGAATGATGTGTAATGATGAATGTAGTGAGCNGACAGTGCAATGGCACACTGNGTAAAATAATTCTACCACACTGGAATAAAGCCAGGGAATTGGTTCCCAAAAAAAAAA]

[+] EMBL BQ907020             [GGAATAANAGTCTTGGGGTATACGCCCTTNGGCAAGGGTGTACCACTGGGTGCCGGGGGATATTGCCCCCGGGGTGCATGACCCACTAACTGGCTAGTGCACAGCTTGTGCACGTGCATATGATGAGATTGCCATATATTGTGTGTGAANCGTGGTGTGGGAGCTGGATGCATCCGAGTTTTGTTTGACAGGGCAGCACACACGTTTGGCCAAGGTTTCTGGTAAATGGATTGGGAAAAAGCCACTTGTGGAGTAAAGNCCTTAGATCTGGCCTTATTGGCCTCGCAATAATGCCGGATGGAATGCCCAACATGTGGGATAATGCCTGAATGGCCAGGGCCAGGGCAGACCCTATGGTGTGGCACCGGGTGGCTGCCTGGATATACCGCCCTGGAATAACCACCGGGCANATGCTGGGGCATGGATGCCGGCATGGGAGGATTTTGCNTGACCTGGTGATACGCCCTGATGGAATATGCTGTTTGTGGCTGGGACCAAAGAATGCTGNTGCAAGGTGAATGATGTGTAATGATGAATGTAGTGAGCNGACAGTGCAATGGCACACTGNGTAAAATAATTCTACCACACTGGAATAAAGCCAGGGAATTGGTTCCCAAAAAAAAAA]


>consensus_12202#2 GGAATAANAGTCTTGGGGTATACGCCCTTNGGCAAGGGTGTACCACTGGGTGCCGGGGGA TATTGCCCCCGGGGTGCATGACCCACTAACTGGCTAGTGCACAGCTTGTGCACGTGCATA TGATGAGATTGCCATATATTGTGTGTGAANCGTGGTGTGGGAGCTGGATGCATCCGAGTT TTGTTTGACAGGGCAGCACACACGTTTGGCCAAGGTTTCTGGTAAATGGATTGGGAAAAA GCCACTTGTGGAGTAAAGNCCTTAGATCTGGCCTTATTGGCCTCGCAATAATGCCGGATG GAATGCCCAACATGTGGGATAATGCCTGAATGGCCAGGGCCAGGGCAGACCCTATGGTGT GGCACCGGGTGGCTGCCTGGATATACCGCCCTGGAATAACCACCGGGCANATGCTGGGGC ATGGATGCCGGCATGGGAGGATTTTGCNTGACCTGGTGATACGCCCTGATGGAATATGCT GTTTGTGGCTGGGACCAAAGAATGCTGNTGCAAGGTGAATGATGTGTAATGATGAATGTA GTGAGCNGACAGTGCAATGGCACACTGNGTAAAATAATTCTACCACACTGGAATAAAGCC AGGGAATTGGTTCCCAAAAAAAAAA



consensusID : consensus_12202#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence
                              [TCATATTGGAGATAACATGCATGATCTAGATGCAATGAAGTAAGTGACATCTAGGATATTAAGTAATTGCTTGTCTTCAGAAATGAGCATTGTTACCCTAGAAAATGTCGACATTTATTGTGTTCTTGGTCTTGAGATAAGATAATACTCTAGCCAGAAGTGATTAAAAGTGTTTCCCATATTTTGAAGTCGCTTGACCTAAGAAACATGATACTCCCTCCATCCCTTCTTATATGAGGTTCAACAGAGTACCACCTTTTGTTTTTAGATGATATATATATTGTGAACTTATGAGTGGTCCAGTTACATCTAGGCATAATTGATTGTCTTATTGGCTGCCTGGATTTTTATTCATCTTGAAAATGGTTACACGTACCAGATCACAAAAGAATTGTCACGTCTACATGAGATGGCATCGCACAACAGGCTGAGCACAGAAGATATTGCTGGTGGAACCATAACACTAAGCAACATAGGCGCCATTGGTGGCAAGTTTGGCTCTCCGCTTCTCAACTTGCCTGAAGTTGCCATTATTGCACTCGGACGCATTCAAAA]

[+] EMBL CF308643             [TCATATTGGAGATAACATGCATGATCTAGATGCAATGAAGTAAGTGACATCTAGGATATTAAGTAATTGCTTGTCTTCAGAAATGAGCATTGTTACCCTAGAAAATGTCGACATTTATTGTGTTCTTGGTCTTGAGATAAGATAATACTCTAGCCAGAAGTGATTAAAAGTGTTTCCCATATTTTGAAGTCGCTTGACCTAAGAAACATGATACTCCCTCCATCCCTTCTTATATGAGGTTCAACAGAGTACCACCTTTTGTTTTTAGATGATATATATATTGTGAACTTATGAGTGGTCCAGTTACATCTAGGCATAATTGATTGTCTTATTGGCTGCCTGGATTTTTATTCATCTTGAAAATGGTTACACGTACCAGATCACAAAAGAATTGTCACGTCTACATGAGATGGCATCGCACAACAGGCTGAGCACAGAAGATATTGCTGGTGGAACCATAACACTAAGCAACATAGGCGCCATTGGTGGCAAGTTTGGCTCTCCGCTTCTCAACTTGCCTGAAGTTGCCATTATTGCACTCGGACGCATTCAAAA]


>consensus_12202#3 TCATATTGGAGATAACATGCATGATCTAGATGCAATGAAGTAAGTGACATCTAGGATATT AAGTAATTGCTTGTCTTCAGAAATGAGCATTGTTACCCTAGAAAATGTCGACATTTATTG TGTTCTTGGTCTTGAGATAAGATAATACTCTAGCCAGAAGTGATTAAAAGTGTTTCCCAT ATTTTGAAGTCGCTTGACCTAAGAAACATGATACTCCCTCCATCCCTTCTTATATGAGGT TCAACAGAGTACCACCTTTTGTTTTTAGATGATATATATATTGTGAACTTATGAGTGGTC CAGTTACATCTAGGCATAATTGATTGTCTTATTGGCTGCCTGGATTTTTATTCATCTTGA AAATGGTTACACGTACCAGATCACAAAAGAATTGTCACGTCTACATGAGATGGCATCGCA CAACAGGCTGAGCACAGAAGATATTGCTGGTGGAACCATAACACTAAGCAACATAGGCGC CATTGGTGGCAAGTTTGGCTCTCCGCTTCTCAACTTGCCTGAAGTTGCCATTATTGCACT CGGACGCATTCAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12202#0      TGTTCCTAGTGGCACACTCTCCACACCAGCAGTTAGGCATCTAGCAAAGCAGTATGGGCT 60
consensus_12202#3      ------------------------------------------------------------
consensus_12202#1      ------------------------------------------------------------
consensus_12202#2      ------------------------------------------------------------
                                                                                   

consensus_12202#0      CAACATAAGTGATATTCAGGGAACAGGAAAAGATGGTAGAGTTTTGAAAGAAGATGTTCT 120
consensus_12202#3      ------------------------------------------------------------
consensus_12202#1      ------------------------------------------------------------
consensus_12202#2      ------------------------------------------------------------
                                                                                   

consensus_12202#0      GAGTTATGCTGCCAGCAAGGGTCTTTGCAAAGAACCGACATCAGCTTTGGAAGAGAACAT 180
consensus_12202#3      ----------------------------------------TCATATT--GGAGATAACAT 18
consensus_12202#1      ------------------------------------------------------------
consensus_12202#2      ------------------------------------------------------------
                                                                                   

consensus_12202#0      TGATCAAGTGGAGTTACTGGAGGGAAGGGGATC---ATTACCCGATGCTAACTCTTATGA 237
consensus_12202#3      GCATGATCTAGATGCAATGAAGTAAGTGACATCTAGGATATTAAGTAATTGCTTGTCTTC 78
consensus_12202#1      ------------------------------------------------------------
consensus_12202#2      ------------------------------------------------------------
                                                                                   

consensus_12202#0      AGATAGAAGAATTTCTCTCAGGGGCTACCAGAGGTCAATGGTCAAATCAATGACCCTGGC 297
consensus_12202#3      AGAAATGAGCATTGTTACC-----CTAGAAAATGTCGACATTTA---TTGTGTTCTTGGT 130
consensus_12202#1      ------------------------------------------------------------
consensus_12202#2      ------------------------------------------------------------
                                                                                   

consensus_12202#0      TGCAAAAGTACCACATTTTCATTATCTGGAGGAAATAAACTGTGATGCTCTTGTGGAACT 357
consensus_12202#3      CTTGAGATAAGATAATACTC--TAGCCAGAAGTGATTAAAAGTGTTTCCCATAT----TT 184
consensus_12202#1      ------------------------------------------------------------
consensus_12202#2      ------------------------------------------------------------
                                                                                   

consensus_12202#0      TAAGGCATCCTTTCAAAATGCGAATAAAGATCATACTATCAAGCACACCTTCCTACCATT 417
consensus_12202#3      TGAAGTCGCTTGAC------CTAAGAAACATGATACTC---------CCTCCATCCCTTC 229
consensus_12202#1      -------------------------AAAGATCATACTATCAAGCACACCTTCCTACCATT 35
consensus_12202#2      ------------------------------------------------------------
                                                                                   

consensus_12202#0      CCTCATAAAGTCTCTTTCTAAGGCACTGAGTAAATA----------------CCCTTTGT 461
consensus_12202#3      TTATATGAGGTTCA----------ACAGAGTAC-CA----------------CCTTTTGT 262
consensus_12202#1      CCTCATAAAGTCTCTTTCTAAGGCACTGAGTAAATATAAGGCATCCTTTCAACCCTTTGT 95
consensus_12202#2      ------------------------------------------------------------
                                                                                   

consensus_12202#0      TGAACAGTTGTTTTGTTGAGGAAACCAATGAAGTTATTTTCAAAGGATCCCATAACATTG 521
consensus_12202#3      T---------TTTAGATGATATATATATTGTGA--ACTTATGAGTGGTCCAGTTACATCT 311
consensus_12202#1      TGAACAGTTGTTTTGTTGAGGAAACCAATGAAGTTATTTTCAAAGGATCCCATAACATTG 155
consensus_12202#2      ---------------------------------------------GGAATAANAGTCTTG 15
                                                                    *           *  

consensus_12202#0      GGGTAGCTATGGCTACAGAACATAGATTAGTGGTGCCAAACATCAAGAATGTTCAATCGC 581
consensus_12202#3      AGGCATAATTGATTGT------CTTATTGGCTGCCTGGATTTTTATTCATCTTGAAAATG 365
consensus_12202#1      GGGTAGCTATGGCTACAGAACATGGATTAGTGGTGCCAAACATCAAGAATGTTCAATCGC 215
consensus_12202#2      GGGTA--TACGCCCTTNGG---CAAGGGTGTACCACTGGGTGCCGGGGG----ATATTGC 66
                        ** *     *                  *                         *    

consensus_12202#0      TTTCAATATTGGAGATCACAAAAGAATTGTCACGTCTACATGAGATGGCATCGCACAACA 641
consensus_12202#3      GTTACACGTACCAGATCACAAAAGAATTGTCACGTCTACATGAGATGGCATCGCACAACA 425
consensus_12202#1      TTT-AATATTGGAGGTAGCCACT-AGCCAACAACTGTTTTTTATATGTAAATTCATGAGT 273
consensus_12202#2      CCCCGGGGT---GCATGACCCACTAACTGGCTAGTGCACAGCTTGTGCACGTGCATATGA 123
                               *      *  *     *     *   *          **      **     

consensus_12202#0      GGCTGAGCACAGAAGATATTGCTGGTGGAACCATAACACTAAGCAACATAGGCGCCATTG 701
consensus_12202#3      GGCTGAGCACAGAAGATATTGCTGGTGGAACCATAACACTAAGCAACATAGGCGCCATTG 485
consensus_12202#1      ATTTCCTCACT----------TTTCTGAAATTTCAATTCTC--TTACATGTTTGCATTCA 321
consensus_12202#2      ---TGAGATTGCCATATATTGTGTGTG-AANCGTGGTGTGG---GAGCTGGATGC-ATCC 175
                          *                     ** **               *  *    **  *  

consensus_12202#0      GTGGCAAGTTTGGCTCTCCGCTTCTCA-ACTTGCCTGAAGTTGCCATTATTGCACTCGGA 760
consensus_12202#3      GTGGCAAGTTTGGCTCTCCGCTTCTCA-ACTTGCCTGAAGTTGCCATTATTGCACTCGGA 544
consensus_12202#1      AAGTCAACTGTAGTTTCACGGCTGCTA-GGAAAAATGAGAAACATAAAAATCCTCTGGAA 380
consensus_12202#2      GAGTTTTGTTTGACAGGGCAGCACACACGTTTGGCCAAGGTTTCTGGTA---------AA 226
                         *     * *       *       *          *          *          *

consensus_12202#0      CGCATTCAAAAACTTCCTCGCTTTGATGATGATGAAAATGTTTATCCTTCCTCAATAATC 820
consensus_12202#3      CGCATTCAAAA------------------------------------------------- 555
consensus_12202#1      AAAATTCAATC-CTCAATGTAATGGACCATACTTAACTATTGGATACTCTTAGGAGGACT 439
consensus_12202#2      TGGATTGGGAAAAAGCCACTTGTGGAGTAAAGNCCTTAGATCTGGCCTTATTGGCCTCGC 286
                          ***                                                      

consensus_12202#0      AATGTGACTGTTGGAGCTGATCACCGAGTTGTTGACGGCGCCACCGTTGCAAGGTTCTGT 880
consensus_12202#3      ------------------------------------------------------------
consensus_12202#1      GATTTAAATCTAAACGGTAGAAAAGAATTTTTGGAAGATGGAAAC------AAATATTAT 493
consensus_12202#2      AAT---AATGCCGGATGGAATGCCCAACATGTGG--GATAATGCC------TGAATGGCC 335
                                                                                   

consensus_12202#0      AATGAGTGGAAAAGCCTTGTGGAGAAGC-CAGAACGGCTATTGCTGCATATGCGATGATC 939
consensus_12202#3      ------------------------------------------------------------
consensus_12202#1      ATTTAGGGAAAGAA----AGAGAGAAAA-AACACTACCATGTCAATCATGTTTCGTCGTT 548
consensus_12202#2      AGGGCCAGGGCAGACCCTATGGTGTGGCACCGGGTGGCTGC--CTGGATATACCGCCCTG 393
                                                                                   

consensus_12202#0      CAATTGGATATCTGATGCAGGCGAGGGCAGACCATTTGCACAGGTGCTCTGAAAGCCTGA 999
consensus_12202#3      ------------------------------------------------------------
consensus_12202#1      TTATATGCTAACATTTGGAG-TAAAGAAATACAAGGTTCAAAGGAGCTCCCTTCGAAGAC 607
consensus_12202#2      GAAT-AACCACCGGGCANATGCTGGGGCA-----TGGATGCCGGCATGGGAGGATTTTGC 447
                                                                                   

consensus_12202#0      AAACACAGGCAATCTGGCATGATCGCATGGAGATTTCGTACTGTAAGCCTATGAAATCTT 1059
consensus_12202#3      ------------------------------------------------------------
consensus_12202#1      AAATCATAGCCAAAGAAGAAACTATCTCTGATTGTCTTCTTTGCAACCAATTTCTTACAC 667
consensus_12202#2      NTGACCTGGTGATACGCCCTGATGGAATATGCTGTTTGTGGC-TGGGACCAAAGAATGCT 506
                                                                                   

consensus_12202#0      TTTGCTGGACAAAGAATCTGTCA-AGTAAATATTTATATGAATGTAGTGAGCTGACAGTG 1118
consensus_12202#3      ------------------------------------------------------------
consensus_12202#1      CACGCCATGCAACTAACTAGTCATACTGAATTTCTTTAATTNTTTAGTAGATATTTTATA 727
consensus_12202#2      GNTGCAAGGTGAATGATGTGT-------AATG-----ATGAATGTAGTGAGCNGACAGTG 554
                                                                                   

consensus_12202#0      CAATGGCACACTGTGTAAAATAATTCTACCACACTGGAATAAAGC-AGGGAATTGTTCCC 1177
consensus_12202#3      ------------------------------------------------------------
consensus_12202#1      AAAAAAAAT-TGGCGGTTCATATTTCTGATTGTTCTCATTGATTT-TTAGTACAATTATT 785
consensus_12202#2      CAATGGCACACTGNGTAAAATAATTCTACCACACTGGAATAAAGCCAGGGAATTGGTTCC 614
                                                                                   

consensus_12202#0      CAAAAGAAAAAAAAAAAAAA 1197
consensus_12202#3      --------------------
consensus_12202#1      TGGTAA-------------- 791
consensus_12202#2      CAAAAAAAAAA--------- 625
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)