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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1085 fasta sequence
[TTNNTTTTTTTTTTTNCGCACNATCGCATTAATGGAAGAGAGAATTGAAACAAGTTNCAGCACGACCACAAGACGACAATCTG-CCCAAGACAAAAACTTGCTG-TTATAAATAGGNACATGCCCACTACACTACCACCACCACTACTACCCCCCCTCAAACAACAGAACCCCCACCACCAAAGCACATACGGCAAAGTAGCCAGACAAACGGAAACTCAAAGAGAGGAGAGAGTGAGTTCCTTTGATCATACAGTTGTTTTTGGCCAATCATCGTCCGAGGAGAGATGGGGATGCAGAGCAACGACGGCGCCGTCATGTTCTCCTCCATCGCGCTGCTGCA-GCAGAGGTTCAGGGAGCTGGAGAGGATCAAGGAGGAGCGGGAGGAGAGGCTCATCCAGATGCTCCCTCCCCGCTCCGACCGCTCCCACAGTGGCGCTGCGGCCGTCGTCGTAGCCACGGCTGCTCCGAGGGAAGTGCCGGTGAAATGGTTCTTCCATCCGGAGCTGTTGTATCCATGCAGGCCTCTGCGTGACATGGCTGCTGCTACCTTACTTCCGGTCATGCCGGCCACCATCGACTGTGAATTCAAAACCTTCCAGCTCCGTGGTGACTCGCTCGCCGTGGACCTGTGGCCTAGTAAGGCCTACAAGCATGTATCCAGTGAAGTTGATGTCGACACCTCACTGCACCTCTAGATTACTACTACTGCTACTAAAATTGCTATCCTAAGCTGTTAACCTTCCAAGTATCCACCAGTGTTGCTGCTCTAGTTGTTTTTGGTAGCCTAGTATGTTTCTCTTCTTCTTTGGTTTTGTAACAAGGGGCAGGAGGGTGGTGAGTTGTAATTATTGCCAGTAGTAAGATTGTGCTGGTTGTTTCCCTGTTACCTTGTCGCCGCTGAATTGCCAGCATCTTCCAATTGGGCACTGTTATCGTCTGAGTAGTAGAGTAGCTCTGCAGGGCAACCATTTTCTGATGTATCAGTACACTCCTCATCATCGCTATCGGAAGAATCACCAGGGTTCTGTTTCTTCCGTTTGATGATCTTTTTCGAAATCATCCGGTTAACACCCTTGCTGTCAACA]
[-] EMBL C98108 [TTNNTTTTTTTTTTTNCGCACNATCGCATTAATGGAAGAGAGAATTGAAACAAGTTNCAGCACGACCACAAGACGACAATCTGCCCCAAGACAAAAACTTGCTGCTTATAAATAGGNACATGCCCACTACACTACCACCACCACTACTACCCCCCCTCAAACAACAGAACCCCCACCACCAAAGCACATACGGCAAAGTAGCCAGACAAACGGAAACTCAAA ]
[-] EMBL BM421073 [ ttttttttTTGAAACAAGTTGCAGCACGACCACAAGACGACAATCTG CCCAAGACAAAAACTTGCTG TTATAAATAGGCACATGCCCACTACACTACCACTACCACTACTACCCCCCCTCAAACAACAGAACCCCCACCACCAAAGCACATACGGCAAAGTAGCCAGACAAACGGAAACTCAAAGAGAGGAGAGAGTGAGTTCCTTTGATCATACAGTTGTTTTTGGCCAATCATCGTCCGAGGAGAGATGGGGATGCAGAGCAACGACGGCGCCGTCATGTTCTCCTCCATCGCGCTGCTGCA GCAGAGGTTCAGGGAGCTGGAGAGGATCAAGGAGGAGCGGGAGGAGAGGCTCATCCAGATGCTCCCTCCCCGCTCCGACCGCTCCCACAGTGGCGCTGCGGCCGTCGTCGTAGCCACGGCTGCTCCGAGGGAAGT ]
[+] EMBL CF281776 [ CAAACAACAGAACCCCCACCACCAAAGCACATACGGCAAAGTAGCCAGACAAACGGAAACTCAAAGAGAGGAGAGAGTGAGTTCCTTTGATCATACAGTTGTTTTTGGCCAATCATCGTCCGAGGAGAGATGGGGATGCATATTTTTTACGGCGCCGTCATGTTCTCCTCCATCGCGCTGCTGCATTTTTTTGTTCAGGGAGCTGGAGAGGATCAAGGAGGAGCGGGAGGAGAGGCTCATCCAGATGCTCCCTCCCCGCTCCGACCGCTCCCACAGTGGCGCTGCGGCCGTCGTCGTAGCCACGGCTGCTCCGAGGGAAGTGCCGGTGAAATGGTTCTTCCATCCGGAGCTGTTGTATCCATGCAGGCCTCTGCGTGACATGGCTGCTGCTACCTTACTTCCGGTCATGCCGGCCACCATCGACTGTGAATTCAAAACCTTCCAGCTCCGTGGTGACT ]
[+] EMBL CB621709 [ TGATCATACAGTTGTTTTTGGCCAATCATCGTCCGAGGAGAGATGGGGATGCAGAGCAACGACGGCGCCGTCATGTTCTCCTCCATCGCGCTGCTGCA GCAGAGGTTCAGGGAGCTGGAGAGGATCAAGGAGGAGCGGGAGGAGAGGCTCATCCAGATGCTCCCTCCCCGCTCCGACCGCTCCCACAGTGGCGCTGCGGCCGTCGTCGTAGCCACGGCTGCTCCGAGGGAAGTGCCGGTGAAATGGTTCTTCCATCCGGAGCTGTTGTATCCATGCAGGCCTCTGCGTGACATGGCTGCTGCTACCTTACTTCCGGTCATGCCGGCCACCATCGACTGTGAATTCAAAACCTTCCAGCTCCGTGGTGACTCGCTCGCCGTGGACCTGTGGCCTAGTAAGGCCTACAAGCATGTATCCAGTGAAGTTGATGTCGACACCTCACTGCACCTCTAGATTACTACTACTGCTACTAAAATTGCTATCCTAAGCTGTTAACCTTCCAAGTATCCACCAGTGTTGCTGCTCTAGTTGTTTTTGGTAGCCTAGTATGTTTCTCTTCTTCTTTGGTTTTGTAACAAGGGGCAGGAGGGTGGTGAGTTGTAATTATTGCCAGTAGTAAGATTGTGCTGGTTGTTTCCCTGTTACCTTGTCGCCGCTGAATTGCCAGCATCTTCCAATTGGGCACTGTTATCGTCTGAGTAGTAGAGTAGCTCTGCAGGGCAACCATTTTCTGATGTATCAGTACACTCCTCATCATCGCTATCGGAAGAATCACCAGGGTTCTGTTTCTTCCGTTTGATGATCTTTTTCGAAATCATCCGGTTAACACCCTTGCTGTCAACA]
[-] EMBL CB642372 [ GCGCTGCGGCCGTCGTCGTAGCCACGGCTGCTCCGAGGGAAGTGCCGGTGAAATGGTTCTTCCATCCGGAGCTGTTGTATCCATGCAGGCCTCTGCGTGACATGGCTGCTGCTACCTTACTTCCGGTCATGCCGGCCACCATCGACTGTGAATTCAAAACCTTCCAGCTCCGTGGTGACTCGCTCGCCGTGGACCTGTGGCCTAGTAAGGCCTACAAGCATGTATCCAGTGAAGTTGATGTCGACACCTCACTGCACCTCTAGATTACTACTACTGCTACTAAAATTGCTATCCTAAGCTGTTAACCTTCCAAGTATCCACCAGTGTTGCTGCTCTAGTTGTTTTTGGTAGCCTAGTATGTTTCTCTTCTTCTTTGGTTTTGTAACAAGGGGCAGGAGGGTGGTGAGTTGTAATTATTGCCAGTAGTAAGATTGTGCTGGTTGTTTCCCTGTTACCTTGTCGCCGCTGAATTGCCAGCATCTTCCAATTGGGCACTGTTATCGTCTGAGTAGTAGAGTAGCTCTGCAGGGCAACCATTTTCTGATGTATCAGTACACTCCTCATCATCGCTATCGGAAGAATCA ]
[+] EMBL CA766667 [ CCGGTGAAATGGTTCTTCCATCCGGAGCTGTTGTATCCATGCAGGCCTCTGCGTGACATGGCTGCTGCTACCTTACTTCCGGTCATGCCGGCCACCATCGACTGTGAATTCAAAACCTTCCAGCTCCGTGGTGACTCGCTCGCCGTGGACCTGTGGCCTAGTAAGGCCTACAAGCATGTATCCAGTGAAGTTGATGTCGACACCTCACTGCACCTCTAGATTACTACTACTGCTACTAAAATTGCTATCCTAAGCTGTTAACCTTCCAAGTATCCACCAGTGTTGCTGCTCTAGTTGTTTTTGGTAGCCTAGTATGTTTCTCTTCTTCTTTGGTTTTGTAACAAGGGGCAGGAGGGTGGTGAGTTGTAATTATTGCCAGTAGTAAGATTGTGCTGGTTGTTTCCCTGTTACCTTGTCGCCGCTGAATTGCCAGCATCTTCCAATTGGGCACTGTTATCGTCTGAGTAGTAGAGTAGCTCTGCAGGGCAACCATTTTCTGATGTATCAGTACACTCCTCATCATCGCTATCGGAAGAATCACCAGGGTTCTGTTTCTTCCGTTTGATGATCTTTTTCGAAATCATCCGGTTAACACCCTTGC ]
[-] EMBL D43286 [ TGACTCGCNCGCCGTGNACCTGTGGCCTAGTAAGGCCTACAAGCATGTATCCAGTGAAGATGATGTCGACACCTCACTGCACCTCTAGATTACTACTACTGCTACTAAAATTGCTATCCTAAGCTGTTAACCTTCCAAGTATCCACCAGTGTTGCTGCTCTAGTTGTTTTTGGTAGCCTAGTATGTNTCTCTTCGTCTTTGGTTTTGTAACAAGGGGCAGGAGGGTGGTGAGTTGTAATTATTGCCAGTAGTAAGATTGTGCTGGTTGTTTCCCTGTT ]
[-] EMBL OS07162A [ ACACCTCACTGCACCTCCAGATTACTACTACTGCTACTAAAATTGCTATCCTAAGCTGTTAACCTTCCAAGTATCCACCAGTGTTGCTGCTCTAGTTGTTTTTGGTAGCCTAGTATGTTTCTCTTCTTCTTTGGTTTTGTAACAAGGGGCAGGAGGGTGGTGAGTTGTAATTATTGCCAGTAGTAAGATTGTGCTGGTTGTTTCCCTGTTACCTTGTCGCCGCTGAATTGCCAGCATCTTCCAATTGGGCACTGTTATCGTCTGAGTAGTAGAGTAGCTCTGCAGGGCAACCATTTTCTGATGTATCAGTACACTCCTCATCATCGCTATCGGAAGAATCACCAGGGTTCTGTTTCTTCCGTTTGATGATCTTTTTCGAAATCATCCGGT ]
consensusID : consensus_12203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[TTTTTTTTTTGAAACAAGTTGCAGCACGACCACAAGACGACAATGCTGCCCCAAGACAAAAACTTGCTGCTTATAAATAGGCACATGCCCACTACACTACCACTACCACTACTACCCCCCCTCAAACAACAGAACCCCCACCACCAAAGCACATACGGCAAAGTAGCCAGACAAACGGAAACTCAAAGAGAGGAGAGAGTGAGTTCCTTTGATCATACAGTTGTTTTTGGCCAATCATCGTCCGAGGAGAGATGGGGATGCAGAGCAACGACGGCGCCGTCATGTTCTCCTCCATCGCGCTGCTGCAGCAGAGGTTCAGGGAGCTGGAGAGGATTCAAGGAGGAGCGGGAGGAGAGGCTCATCCAGATGCTCCCTCCCCGCTCCGACCGCTCCCACAGTGGGCGCTGCGGCCGTCGTCGTAGCAAGGCTGCTCCGAGGGAAGTTCCGGTTAAATGGTTCTTCCATCCGGAGCTGTTTATCCATGAGGCTTTGGTTAAATGGTGNTGNAACTANTTCGGGAATTGGGCACATGGNGGGATTNAAACTTCANCCGGGGACCCCNCGGGACTGGGCAAAAGCTTTCGGGANTNANA]
[+] EMBL AI096169 [TTTTTTTTTTGAAACAAGTTGCAGCACGACCACAAGACGACAATGCTGCCCCAAGACAAAAACTTGCTGCTTATAAATAGGCACATGCCCACTACACTACCACTACCACTACTACCCCCCCTCAAACAACAGAACCCCCACCACCAAAGCACATACGGCAAAGTAGCCAGACAAACGGAAACTCAAAGAGAGGAGAGAGTGAGTTCCTTTGATCATACAGTTGTTTTTGGCCAATCATCGTCCGAGGAGAGATGGGGATGCAGAGCAACGACGGCGCCGTCATGTTCTCCTCCATCGCGCTGCTGCAGCAGAGGTTCAGGGAGCTGGAGAGGATTCAAGGAGGAGCGGGAGGAGAGGCTCATCCAGATGCTCCCTCCCCGCTCCGACCGCTCCCACAGTGGGCGCTGCGGCCGTCGTCGTAGCAAGGCTGCTCCGAGGGAAGTTCCGGTTAAATGGTTCTTCCATCCGGAGCTGTTTATCCATGAGGCTTTGGTTAAATGGTGNTGNAACTANTTCGGGAATTGGGCACATGGNGGGATTNAAACTTCANCCGGGGACCCCNCGGGACTGGGCAAAAGCTTTCGGGANTNANA]
consensusID : consensus_12203#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence
[TTTTTTTTTTGCCCCAAGACAAAAACTTGCTGCTTATAAATAGGCACATGCCCACTACACTACCACTACCACTACTACCCCCCCTCAAACAACAGAACCCCCACCACAAAGCACATACGGAAAGTAGCCAGACAAACGGAAACTCAAAGAGAGGAGAGAGTGAGTTCCTTTGATCATACAGTTGTTTTTGGCCAATCATCGTCCGAGGAGAGATGGGGATGCAGAGCAACGACGGCGCCGTCATGTTCTCCTCCATCGCGCTGCTGCAGCANAGGTTCAGGGAGCTGGAAGAGGATCAAGGAGGAGCGGGAGGAGAGGCTCATCCAGATGCTCCCTCCCCGCTCCGACCGATCCCACAGTGGCGCTGCGGCCGTCTGTCGTAAGCCACGGCTGATCCGAGGGAAGTGCCGGTGAAATTGGTTCTTCCATCCGGAGCTGTNTGTATCCATGCAGGACTCTGGTGACATGGCTGTGCTACATTACTTCGGTCATGCCGGGCACCCATCGGACT]
[-] EMBL BM419471 [TTTTTTTTTTGCCCCAAGACAAAAACTTGCTGCTTATAAATAGGCACATGCCCACTACACTACCACTACCACTACTACCCCCCCTCAAACAACAGAACCCCCACCACAAAGCACATACGGAAAGTAGCCAGACAAACGGAAACTCAAAGAGAGGAGAGAGTGAGTTCCTTTGATCATACAGTTGTTTTTGGCCAATCATCGTCCGAGGAGAGATGGGGATGCAGAGCAACGACGGCGCCGTCATGTTCTCCTCCATCGCGCTGCTGCAGCANAGGTTCAGGGAGCTGGAAGAGGATCAAGGAGGAGCGGGAGGAGAGGCTCATCCAGATGCTCCCTCCCCGCTCCGACCGATCCCACAGTGGCGCTGCGGCCGTCTGTCGTAAGCCACGGCTGATCCGAGGGAAGTGCCGGTGAAATTGGTTCTTCCATCCGGAGCTGTNTGTATCCATGCAGGACTCTGGTGACATGGCTGTGCTACATTACTTCGGTCATGCCGGGCACCCATCGGACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12203#0 TTNNTTTTTTTTTTTNCGCACNATCGCATTAATGGAAGAGAGAATTGAAACAAGTTNCAG 60
consensus_12203#2 ------------------------------------------------------------
consensus_12203#1 ------------------------------------TTTTTTTTTTGAAACAAGTTGCAG 24
consensus_12203#0 CACGACCACAAGACGACAAT-CTGCCC-AAGACAAAAACTTGCTG-TTATAAATAGGNAC 117
consensus_12203#2 ------------TTTTTTTT-TTGCCCCAAGACAAAAACTTGCTGCTTATAAATAGGCAC 47
consensus_12203#1 CACGACCACAAGACGACAATGCTGCCCCAAGACAAAAACTTGCTGCTTATAAATAGGCAC 84
* ***** ***************** *********** **
consensus_12203#0 ATGCCCACTACACTACCACCACCACTACTACCCCCCCTCAAACAACAGAACCCCCACCAC 177
consensus_12203#2 ATGCCCACTACACTACCACTACCACTACTACCCCCCCTCAAACAACAGAACCCCCACCAC 107
consensus_12203#1 ATGCCCACTACACTACCACTACCACTACTACCCCCCCTCAAACAACAGAACCCCCACCAC 144
******************* ****************************************
consensus_12203#0 CAAAGCACATACGGCAAAGTAGCCAGACAAACGGAAACTCAAAGAGAGGAGAGAGTGAGT 237
consensus_12203#2 -AAAGCACATACGG-AAAGTAGCCAGACAAACGGAAACTCAAAGAGAGGAGAGAGTGAGT 165
consensus_12203#1 CAAAGCACATACGGCAAAGTAGCCAGACAAACGGAAACTCAAAGAGAGGAGAGAGTGAGT 204
************* *********************************************
consensus_12203#0 TCCTTTGATCATACAGTTGTTTTTGGCCAATCATCGTCCGAGGAGAGATGGGGATGCAGA 297
consensus_12203#2 TCCTTTGATCATACAGTTGTTTTTGGCCAATCATCGTCCGAGGAGAGATGGGGATGCAGA 225
consensus_12203#1 TCCTTTGATCATACAGTTGTTTTTGGCCAATCATCGTCCGAGGAGAGATGGGGATGCAGA 264
************************************************************
consensus_12203#0 GCAACGACGGCGCCGTCATGTTCTCCTCCATCGCGCTGCTGCAGCAGAGGTTCAGGGAGC 357
consensus_12203#2 GCAACGACGGCGCCGTCATGTTCTCCTCCATCGCGCTGCTGCAGCANAGGTTCAGGGAGC 285
consensus_12203#1 GCAACGACGGCGCCGTCATGTTCTCCTCCATCGCGCTGCTGCAGCAGAGGTTCAGGGAGC 324
********************************************** *************
consensus_12203#0 TGGA-GAGGATCAAGGAGGAGCGGGAGGAGAGGCTCATCCAGATGCTCCCTCCCCGCTCC 416
consensus_12203#2 TGGAAGAGGATCAAGGAGGAGCGGGAGGAGAGGCTCATCCAGATGCTCCCTCCCCGCTCC 345
consensus_12203#1 TGGAGAGGATTCAAGGAGGAGCGGGAGGAGAGGCTCATCCAGATGCTCCCTCCCCGCTCC 384
**** * **************************************************
consensus_12203#0 GACCGCTCCCACAGTGG-CGCTGCGGCCGTC-GTCGTA-GCCACGGCTGCTCCGAGGGAA 473
consensus_12203#2 GACCGATCCCACAGTGG-CGCTGCGGCCGTCTGTCGTAAGCCACGGCTGATCCGAGGGAA 404
consensus_12203#1 GACCGCTCCCACAGTGGGCGCTGCGGCCGTC-GTCGTA--GCAAGGCTGCTCCGAGGGAA 441
***** *********** ************* ****** ** ***** **********
consensus_12203#0 GTGCCGGTGAAAT-GGTTCTTCCATCCGGAGCTGTT-GTATCCATGCAGGCCTCTGCGTG 531
consensus_12203#2 GTGCCGGTGAAATTGGTTCTTCCATCCGGAGCTGTNTGTATCCATGCAGGACTCTG-GTG 463
consensus_12203#1 GTTCCGGTTAAAT-GGTTCTTCCATCCGGAGCTGTT--TATCCATG--AGGCTTTG-GTT 495
** ***** **** ********************* ******** * ** ** **
consensus_12203#0 ACATGGCTGCTGCTACCTTACTTCCGGTCATGCCGGCCACC-ATCG-ACTGTGAATTCAA 589
consensus_12203#2 ACATGGCTG-TGCTACATTACTTC-GGTCATGCCGGGCACCCATCGGACT---------- 511
consensus_12203#1 AAATGG-TGNTGNAAC--TANTTCGGG---AATTGGGCACATGGNGGGATTNAAACTTCA 549
* **** ** ** ** ** *** ** ** *** * *
consensus_12203#0 AACCTTCCAGCTCCGTGGTGACTCGCTCGCCGTGGACCTGTGGCCTAGTAAGGCCTACAA 649
consensus_12203#2 ------------------------------------------------------------
consensus_12203#1 --NCCGGGGACCCCNCGG-GACTGG---GCAAAAGCTTTCGGGANTNANA---------- 593
consensus_12203#0 GCATGTATCCAGTGAAGTTGATGTCGACACCTCACTGCACCTCTAGATTACTACTACTGC 709
consensus_12203#2 ------------------------------------------------------------
consensus_12203#1 ------------------------------------------------------------
consensus_12203#0 TACTAAAATTGCTATCCTAAGCTGTTAACCTTCCAAGTATCCACCAGTGTTGCTGCTCTA 769
consensus_12203#2 ------------------------------------------------------------
consensus_12203#1 ------------------------------------------------------------
consensus_12203#0 GTTGTTTTTGGTAGCCTAGTATGTTTCTCTTCTTCTTTGGTTTTGTAACAAGGGGCAGGA 829
consensus_12203#2 ------------------------------------------------------------
consensus_12203#1 ------------------------------------------------------------
consensus_12203#0 GGGTGGTGAGTTGTAATTATTGCCAGTAGTAAGATTGTGCTGGTTGTTTCCCTGTTACCT 889
consensus_12203#2 ------------------------------------------------------------
consensus_12203#1 ------------------------------------------------------------
consensus_12203#0 TGTCGCCGCTGAATTGCCAGCATCTTCCAATTGGGCACTGTTATCGTCTGAGTAGTAGAG 949
consensus_12203#2 ------------------------------------------------------------
consensus_12203#1 ------------------------------------------------------------
consensus_12203#0 TAGCTCTGCAGGGCAACCATTTTCTGATGTATCAGTACACTCCTCATCATCGCTATCGGA 1009
consensus_12203#2 ------------------------------------------------------------
consensus_12203#1 ------------------------------------------------------------
consensus_12203#0 AGAATCACCAGGGTTCTGTTTCTTCCGTTTGATGATCTTTTTCGAAATCATCCGGTTAAC 1069
consensus_12203#2 ------------------------------------------------------------
consensus_12203#1 ------------------------------------------------------------
consensus_12203#0 ACCCTTGCTGTCAACA 1085
consensus_12203#2 ----------------
consensus_12203#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||