|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1116 fasta sequence
[CATTCCATTCCATTCCATTCCTTTCCTTTCTCTCTCCTCCCCCTCGCGCCATTAAGGCTCCAGAGCTTTCTCCCTCTTCACTTGGGGGGGACTGGAAGAAGAGGAGGAGCTCGGCTCGAGGCCCCAAGAATCGAGTTCGTCGGAGGCGGCGGATGCCGGAGAGGTCCGAGCTGGGGCGGCAGCTCCCGCTGAGAGGGCCCCTCAAGGCACTGGAGGCCGACATCCACCATGCCAACACCATGGCTAATGCTATCCAGAGGAACTATGGTGGAGCATGTGTGCAGATGA-GGTTGTCGTGCAGCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCA-GTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGACCTGA-AAGGGAAAGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGGAGGAAGCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGCTGCATAACACTTCTAAAGCAACTGTAAATAAAATCTGCAGGTGAAGTTCATTGAA--AAAAAAATAAAAAAAAA]
[+] EMBL AK067254 [CATTCCATTCCATTCCATTCCTTTCCTTTCTCTCTCCTCCCCCTCGCGCCATTAAGGCTCCAGAGCTTTCTCCCTCTTCACTTGGGGGGGACTGGAAGAAGAGGAGGAGCTCGGCTCGAGGCCCCAAGAATCGAGTTCGTCGGAGGCGGCGGATGCCGGAGAGGTCCGAGCTGGGGCGGCAGCTCCCGCTGAGAGGGCCCCTCAAGGCACTGGAGGCCGACATCCACCATGCCAACACCATGGCTAATGCTATCCAGAGGAACTATGGTGGAGCATGTGTGCAGATGA GGTTGTCGTGCAGCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCA GTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGACCTGA AAGGGAAAGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGGAGGAAGCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCAAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGCTGCATAACACTTCTAAAGCAACTGTAAATAAAATCTGCAGGTGA ]
[+] EMBL CF337915 [CATTCCATTCCATTCCATTCCTTTCCTTTCTCTCTCCTCCCCCTCGCGCCATTAAGGCTCCAGAGCTTTCTCCCTCTTCACTTGGGGGGGACTGGAAGAAGAGGAGGAGCTCGGCTCGAGGCCCCAAGAATCGAGTTCGTCGGAGGCGGCGGATGCCGGAGAGGTCCGAGCTGGGGCGGCAGCTCCCGCTGAGAGGGCCCCTCAAGGCACTGGAGGCCGACATCCACCATGCCAACACCATGGCTAATGCTATCCAGAGGAACTATGGTGGAGCATGTGTGCAGATGAGGGTTGTCGTGCAGCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCA GTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGCGATCATCT ]
[+] EMBL CF314089 [ CCATTCCTTTCCTTTCTCTCTCCTCCCCCTCGCGCCATTAAGGCTCCAGAGCTTTCTCCCTCTTCACTTGGGGGGGACTGGAAGAAGAGGAGGAGCTCGGCTCGAGGCCCCAAGAATCGAGTTCGTCGGAGGCGGCGGATGCCGGAGAGGTCCGAGCTGGGGCGGCAGCTCCCGCTGAGAGGGCCCCTCAAGGCACTGGAGGCCGACATCCACCATGCCAACACCATGGCTAATGCTATCCAGAGGAACTATGGTGGAGCATGTGTGCAGATGA GGTTGTCGTGCAGCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCA GTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAGGCCTTAGAGAATTCTATGCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGACCTGA AAGGGAAAGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGG ]
[+] EMBL CF313015 [ CCTTTCTCTCTCCTCCCCCTCGCGCCATTAAGGCTCCAGAGCTTTCTCCCTCTTCACTTGGGGGGGACTGGAAGAAGAGGAGGAGCTCGGCTCGAGGCCCCAAGAATCGAGTTCGTCGGAGGCGGCGGATGCCGGAGAGGTCCGAGCTGGGGCGGCAGCTCCCGCTGAGAGGGCCCCTCAAGGCACTGGAGGCCGACATCCACCATGCCAACACCATGGCTAATGCTATCCAGAGGAACTATGGTGGAGCATGTGTGCAGATGA GGTTGTCGTGCAGCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCA GTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGACCTGA AAGGGAAAGGGCGATGTAAAG ]
[-] EMBL CF313016 [ AGGAACTATGGTGGAGCATGTGTGCAGATGA GGTTGTCGTGCAGCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCACGTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGACCTGA AAGGGAAAGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCCCGAAGATTGGAGGAAGCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGAaaaaaa ]
[-] EMBL CF337916 [ GAGGGTAGTTTGATTGAGAGGGACCTGA AAGGGAAAGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGGAGGAAGCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGCTGCATAACACTTCTAAAGCAACTGTAAATAAAATCTGCAGGTGAAGTTCATTGAA AAAA ]
[+] EMBL CA767256 [ gaGGACGAGACAAGGGGAAGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGGAGGAAGCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTGTAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGCTGCATAACACTTCTAAAGCAACTGTAAATAAAATCTGCAGGTGAAGTTCATTG ]
[-] EMBL OSA420719 [ AGGGCGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGGAGGAAGCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGGGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGCTGCATAACA ]
[-] EMBL CF314090 [ CATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAAAAGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTTGTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGGTGCATAACACTTCCCAAGCAA AAAAAAAAAATTTGCAGGTGAAGTTCATTGTATTAAAAAAATAAAAAAAAA]
consensusID : consensus_12206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[AGATTTCTAGCGATCATCTACCTATCCTTCAACAGTCTTGAGGTAGTTTGATTGAGAGGGCACCTGAAAGGGAAAGGCCGATGTAAAGACATAGTGAGTAGGAACGGCCTCGAAGATTGGAGGAAGCCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTCCAGTCATCCAATGTGCATAAAATGCTACAGGGACTGTCAAAGGATGTATGTATGTATGTATGTATGTATGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAACCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAACCGGAGAAACCCATTTTGTAAAAAAAAAA]
[+] EMBL BI803271 [AGATTTCTAGCGATCATCTACCTATCCTTCAACAGTCTTGAGGTAGTTTGATTGAGAGGGCACCTGAAAGGGAAAGGCCGATGTAAAGACATAGTGAGTAGGAACGGCCTCGAAGATTGGAGGAAGCCTTTGTAACAAGGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTCCAGTCATCCAATGTGCATAAAATGCTACAGGGACTGTCAAAGGATGTATGTATGTATGTATGTATGTATGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAACCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACATGATGTGGTTGATCCTGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAACCGGAGAAACCCATTTTGTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12206#0 CATTCCATTCCATTCCATTCCTTTCCTTTCTCTCTCCTCCCCCTCGCGCCATTAAGGCTC 60
consensus_12206#1 ------------------------------------------------------------
consensus_12206#0 CAGAGCTTTCTCCCTCTTCACTTGGGGGGGACTGGAAGAAGAGGAGGAGCTCGGCTCGAG 120
consensus_12206#1 ------------------------------------------------------------
consensus_12206#0 GCCCCAAGAATCGAGTTCGTCGGAGGCGGCGGATGCCGGAGAGGTCCGAGCTGGGGCGGC 180
consensus_12206#1 ------------------------------------------------------------
consensus_12206#0 AGCTCCCGCTGAGAGGGCCCCTCAAGGCACTGGAGGCCGACATCCACCATGCCAACACCA 240
consensus_12206#1 ------------------------------------------------------------
consensus_12206#0 TGGCTAATGCTATCCAGAGGAACTATGGTGGAGCATGTGTGCAGATGAGGTTGTCGTGCA 300
consensus_12206#1 ------------------------------------------------------------
consensus_12206#0 GCTCACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATG 360
consensus_12206#1 ------------------------------------------------------------
consensus_12206#0 CTCTTCCCAGTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGGTTTATGCAGATGGAG 420
consensus_12206#1 ------------------------------------------------------------
consensus_12206#0 ATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGCGATCATCT 480
consensus_12206#1 ----------------------------------------AGATTTCTA-GCGATCATCT 19
*** ***** **********
consensus_12206#0 ACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGG-ACCTGAAAGGGAAAGGG 539
consensus_12206#1 ACC-TATCCTTCAACAGTCTTGAGGTAGTTTGATTGAGAGGGCACCTGAAAGGGAAAGGC 78
*** ************* * ******************* ****************
consensus_12206#0 CGATGTAAAGACATAGTGAGTAGGAAGCGGCTCGAAGATTGGAGGAAGC-TTTGTAACAA 598
consensus_12206#1 CGATGTAAAGACATAGTGAGTAGGAACGGCCTCGAAGATTGGAGGAAGCCTTTGTAACAA 138
************************** * ******************* **********
consensus_12206#0 GGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCT 658
consensus_12206#1 GGATGTGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCT 198
************************************************************
consensus_12206#0 GCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTG--------------- 703
consensus_12206#1 GCCTAATTCCAGTCATCCAATGTGCATAAAATGCTACAGGGACTGTCAAAGGATGTATGT 258
******** ******* ****************************
consensus_12206#0 ------------------GTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCT 745
consensus_12206#1 ATGTATGTATGTATGTATGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAA-CCT 317
************************************** ***
consensus_12206#0 TAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCC 805
consensus_12206#1 TAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACA-TGATGTGGTTGATCC 376
******************************************** ***************
consensus_12206#0 TGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCT 865
consensus_12206#1 TGTAACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCT 436
************************************************************
consensus_12206#0 TATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACAC 925
consensus_12206#1 TATACTTCCAGATAATATTTTCTTCTTCTACTATGATTACCTACTCTAATCTGGAAACAC 496
************************************************************
consensus_12206#0 CACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTT-GTAGATTTTTCTTTG 984
consensus_12206#1 CACAAGTTGTGTGTGTGAAATTATGAAACCGGAGAAACCCATTTTGTAAAAAAAAAA--- 553
**************************** ******** ****** *** *
consensus_12206#0 TTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGC 1044
consensus_12206#1 ------------------------------------------------------------
consensus_12206#0 TGCATAACACTTCTAAAGCAACTGTAAATAAAATCTGCAGGTGAAGTTCATTGAAAAAAA 1104
consensus_12206#1 ------------------------------------------------------------
consensus_12206#0 AATAAAAAAAAA 1116
consensus_12206#1 ------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||