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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 909 fasta sequence
[GTAGACGTACGTACGCGCGGCTCAGCCGTGTCCTCTTGTCAAACTGGTTGGGATAAGATAAAGGAGCGGAGCCCGGCAAAGCCGAGCGGCAGCAGAGAGCACAGCTCGGCAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGCCCAGCCCATTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGAGGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCTTGCAAGCAGGAAACGC-CGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCAGGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCATGGAGAAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTAAAAAA]
[+] EMBL AK066239 [GTAGACGTACGTACGCGCGGCTCAGCCGTGTCCTCTTGTCAAACTGGTTGGGATAAGATAAAGGAGCGGAGCCCGGCAAAGCCGAGCGGCAGCAGAGAGCACAGCTCGGCAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGGCGACGTCGGCCTGCGCTCTGTCAGGATGGCCAGCTCACCTGTAGCCCAGCCCATTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGAGGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCTTGCAAGCAGGAAACGCGCGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCAGGGTGGCCAACAAGTACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCATGGAGAAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGG ]
[+] EMBL AK104864 [ GAGAGCACAGCTCGGCAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGCCCAGCCCATTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGAGGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCTTGCAAGCAGGAAACGC CGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCAGGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCATGGAGGAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATG ]
[+] EMBL CF294812 [ GGTAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGC ]
[+] EMBL CF196769 [ CAACACCATGGCGCCGGCAGCGCTAGCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGCCCAGCCCATTGGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGATCAGTGCTGCGACAGCGGAGGCGTCTGGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCACCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCGGCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGANNCGATCCCTTGNNNGNAGGAAACGC CGTCNNNNNGATCANNGTGCTNGGGATGACnnnn ]
[-] EMBL CF294811 [ CTTGCAAGCAGGAAACGC CGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCTCGACGTACATGTTCAGGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACTATGAGAAGCAAGTCATGGAGAACCGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTCTGCTCGAGCAAGTAGAGGAAGAGAAGCACCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAGCGGAGGATCAGGCGAATGCCAGCTAGAACCCCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTAAAAAA]
consensusID : consensus_12226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 384 fasta sequence
[CCACTGCCCCCAAACTGCTGCATCTACGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCCATGCCGTTCTCCTCTTCNCGGGCGGTCGCGCTCCCGCCCGCC-GCCGCCGGCCTCCGCTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTTAAAAAA]
[+] EMBL CF302870 [CCACTGCCCCCAAACTGCTGCATCTACGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCCATGCCGTTCTCCTCTTCNCGGGCGGTCGCGCTCCCGCCCGCC GCCGCCGGCCTCCGCTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTTAAAAA ]
[-] EMBL CF302871 [ CACTGCCCCCAAACTGCTGCATCTACGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCCATGCCGTTCTCCTCTTCGC GGCGGTCGCGCTCCCGCCCGCCNGCCGCCGGCCTCCGCTCTGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTTAAAAAA]
[+] EMBL CB684700 [ AGAGGACTAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGT ]
consensusID : consensus_12226#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence
[CGGCAGACGCTNNNCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCNNNNTGGCCAGCTCACCTGTNNNCCAGCCCATTNGCGAGGCNNNNNNNTTACGNNNNNACCANNTGTTNANNNCANNNNNGCGACNNNNNNNNNNTCTGGTGGTCCGANNNNNCNNNTCACATGAAACC]
[+] EMBL CF195940 [CGGCAGACGCTNNNCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGTCACCGCCGCCGCCGCCGGCCTCCGCTCTGCCNNNNTGGCCAGCTCACCTGTNNNCCAGCCCATTNGCGAGGCNNNNNNNTTACGNNNNNACCANNTGTTNANNNCANNNNNGCGACNNNNNNNNNNTCTGGTGGTCCGANNNNNCNNNTCACATGAAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12226#0 GTAGACGTACGTACGCGCGGCTCAGCCGTGTCCTCTTGTCAAACTGGTTGGGATAAGATA 60
consensus_12226#2 ------------------------------------------------------------
consensus_12226#1 ------------------------------------------------------------
consensus_12226#0 AAGGAGCGGAGCCCGGCAAAGCCGAGCGGCAGCAGAGAGCACAGCTCGGCAACACCATGG 120
consensus_12226#2 ------------------------------------------------------------
consensus_12226#1 ----------------------------------CCACTGCCCCCAAACTGCTGCATCTA 26
consensus_12226#0 CGCCGGCAG-CGCTA-GCCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGT 178
consensus_12226#2 ---CGGCAGACGCTN-NNCGCTCCCATCGCGTCCATTTCCCCCAGCTCCGCCGGGAGGGT 56
consensus_12226#1 CGGCAAAAAATGCTGCGACGCTCTTTGGTCGCCCATGCCGTTCTCCTCTTCNCGGGCGGT 86
* * *** ***** ** **** * * *** * ** ***
consensus_12226#0 CAC-----CGCC-GCCGCCGCCGGCCTCCGCTCTGCCAGGATGGCCAGCTCACCTGTAGC 232
consensus_12226#2 CAC-----CGCC-GCCGCCGCCGGCCTCCGCTCTGCCNNNNTGGCCAGCTCACCTGTNNN 110
consensus_12226#1 CGCGCTCCCGCCCGCCGCCGCCGGCCTCCGCTCTGCTCGAGCAAGTAGAGGAAGAGAAGC 146
* * **** *********************** ** * *
consensus_12226#0 C-CAGCCCATT--GGCGAGGCAGTTGTGTTACGGCCCAACCAGATGTTCAGA---TCAGT 286
consensus_12226#2 C-CAGCCCATT--NGCGAGGCNNNNNNNTTACGNNNNNACCANNTGTTNANN---NCANN 164
consensus_12226#1 AGCGGCTGACTCCAGTGAGGGATCAGGGTGTTACCTTCACTAGGAAAACGGAGGATCAGG 206
* ** * * * **** * ** * **
consensus_12226#0 GCTGCGACAGCGGAGGCGTCT-GGTGGTCCGAAGCAGCAGCTCAGATGAAACCAATTCCA 345
consensus_12226#2 NNNGCGACNNNNNNNNNNTCT-GGTGGTCCGANNNNNCNNNTCACATGAAACC------- 216
consensus_12226#1 CGAATGCCAGCTAGAACACCTTGATTCTGTAATTAGCTAGCTCTCCTGCA-CTGTTAGAT 265
* * ** * * * * ** ** * *
consensus_12226#0 CCACCGAAGAGAAGACGCCATTCGGATACACGAGGAAGGACGTGCTGCTCATCGGCGTCG 405
consensus_12226#2 ------------------------------------------------------------
consensus_12226#1 AGCTTGAATTAAGAACTAGCGGTGGATGTGGATCGTACGTCATACGAATGACCAGCTAAT 325
consensus_12226#0 GCGTGACACTCTTAGGCTACGGCCTCAAATACGGGCTGGAGCTGGTCGGAGTCGATCCCT 465
consensus_12226#2 ------------------------------------------------------------
consensus_12226#1 GTCTTCCATGTTTGTGCATCATTCTGAAATAAAAATAGTTGGTAATTCTGCTTAAAAAA- 384
consensus_12226#0 TGCAAGCAGGAAACGCCGTCCAGCTGATCATCGTGCTCGGGATGACGGTGGGGTGGATCT 525
consensus_12226#2 ------------------------------------------------------------
consensus_12226#1 ------------------------------------------------------------
consensus_12226#0 CGACGTACATGTTCAGGGTGGCCAACAAGGACATGACCTACGCCCAGCAGCTCAGGGACT 585
consensus_12226#2 ------------------------------------------------------------
consensus_12226#1 ------------------------------------------------------------
consensus_12226#0 ATGAGAAGCAAGTCATGGAGAAACGATTGGAGAGCTTGACAGAGGCTGAACTGCAAGTTC 645
consensus_12226#2 ------------------------------------------------------------
consensus_12226#1 ------------------------------------------------------------
consensus_12226#0 TGCTCGAGCAAGTAGAGGAAGAGAAGCAGCGGCTGACTCCAGTGAGGGATCAGGGTGTTA 705
consensus_12226#2 ------------------------------------------------------------
consensus_12226#1 ------------------------------------------------------------
consensus_12226#0 CCTTCACTAGGAAAACGGAGGATCAGGCGAATGCCAGCTAGAACACCTTGATTCTGTAAT 765
consensus_12226#2 ------------------------------------------------------------
consensus_12226#1 ------------------------------------------------------------
consensus_12226#0 TAGCTAGCTCTCCTGCACTGTTAGATAGCTTGAATTAAGAACTAGCGGTGGATGTGGATC 825
consensus_12226#2 ------------------------------------------------------------
consensus_12226#1 ------------------------------------------------------------
consensus_12226#0 GTACGTCATACGAATGACCAGCTAATGTCTTCCATGTTTGTGCATCATTCTGAAATAAAA 885
consensus_12226#2 ------------------------------------------------------------
consensus_12226#1 ------------------------------------------------------------
consensus_12226#0 ATAGTTGGTAATTCTGCTAAAAAA 909
consensus_12226#2 ------------------------
consensus_12226#1 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||