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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2231 fasta sequence
[CTCTCCGCCGAGGAGCGCCTCCGCCGCGAGCGCGCACGGGAGCGCGGCCTCGGCGTCACGCGCTACGAGTGGCGCGCCCGCCTCCCCGGCACCCCCGCCTCCCGCGCCGGCATTGTCGTGCCGCTCCCCTCTGGGGTTTACTTCCAGGATTTGTCTGGTGCTGAACCTGTACTCAAGCTGCAAAGTTCAGCCACATCCCCCATCATTGACCCACATCTGTCTCCAGATGGGAGCATGATTGCGTATGTGCGGGATGATGAGTTGCATACAGTGGGGTTCTCTGATGGGCAAACTACCCAGTTGACCTATGGTGCAAGCGAAAGTGGGAAGATCCACGGACTTGCTGAGTATATTGCACAGGAAGAGATGGAAAGGAAGATGGGATTCTGGTGGTCTCCTGATAGCAAACACCTTGCATTTACTGAAGTTGACTCATCTGAAATCCCACTGTATAGAATTATGCACCAGGGTAAAAGTTCGGTTGGTCCAGATGCTCAAGAAGATCATGCTTACCCCTTTGCAGGGGCTGCTAATGTCAAAGTGCGCCTTGGAGTTGTTTCTTCCCATGGAGGAGAAATAACTTGGATGGATCTCCTATGTGGAGAACCAAATAGTATCCATGGTGATGAAGAATATCTTGCTAGAGTAAACTGGATGCATAATAGTGCTATTGCTGTTCAAGTTCTCAATAGAACTCACTCAAAACTTAAGCTACTTAAGTTTGACATCGCTTCAGGTAAAAGGGAGGTCATACTAGAGGAAGAGCATGATACGTGGATAACATTGCACGATTGTTTTACTCCTCTGGATAAAGGAGTGAATAGTAAACATCCAGGTGGATTTATTTGGGCCAGTGAGAAGACAGGATTTAGACACCTGTATCTTCATGACAAGAATGGTGTGTGCTTGGGGCCCCTCACACAAGGTGATTGGATGATCGACCAAATTGCTGGTGTCAATGAGAGTTCTGGAGTTATATATTTTACAGGCACATTGGATGGGCCATTGGAGACAAATCTTTACTCCACCAACCTATTTCCGGATTGGAGCCTTCCCTTGCAAGTCCCCAAGAGGTTGACTCATGGCACAGGACGTCATTCAGTAATTCTTGACCATCAGTTGCTGAGGTTTATTGATGTGTATGACTCAATAAAATCTCCACCTGTGATCCTGCTATGCTCTTTGCTTGATGGAAGTGTGATAATGCCTCTATATGAGCAGCCTCTGACTGTTCAGCCGCTTAAAAAGTTTCAGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA-GC-AAAACCCGGACATATAGGTCTCTAC-GGCTGGAGCTATGGTGGCTTTCTCTC-GGCAATGTGCCTCGC-GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA-CTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAG-AACCTCCGAGGGAGGCTGCTGCTGATCCA-CGGTATGATAGACGAGAACGTGCATTTCAGGCACACGGCGAGGCTCATCAACTCGCTGATGGCGGAGGGGAAGCCCTACGATATCCTCCTCTTCCCCGACGAGAGGCACATGCCGCGCCGGTTAGGGGACC-GGATCTATATGGAAGAGAGGATCTGGGATTTTGT-AGAGAGGAACCTGTGAATGTGAAGAGAGGAAGAGAGAGAGAGAACT-ACCTGTGGTGTATAAATCTTTTGCTCGCTGTGGGCATGACTTGGGAT-GTT-GTTACA-GTATGTTGAAGCTATTTCATT-TCCATCATCATCATCTGTAGTTATCCGCAGACTCCAGGGATATGATTCTTTTGGCTGTGATAAGGATGGCAGATAGATGTTAATTTCACATTGCCTTCC]
[+] EMBL AK100736 [CTCTCCGCCGAGGAGCGCCTCCGCCGCGAGCGCGCACGGGAGCGCGGCCTCGGCGTCACGCGCTACGAGTGGCGCGCCCGCCTCCCCGGCACCCCCGCCTCCCGCGCCGGCATTGTCGTGCCGCTCCCCTCTGGGGTTTACTTCCAGGATTTGTCTGGTGCTGAACCTGTACTCAAGCTGCAAAGTTCAGCCACATCCCCCATCATTGACCCACATCTGTCTCCAGATGGGAGCATGATTGCGTATGTGCGGGATGATGAGTTGCATACAGTGGGGTTCTCTGATGGGCAAACTACCCAGTTGACCTATGGTGCAAGCGAAAGTGGGAAGATCCACGGACTTGCTGAGTATATTGCACAGGAAGAGATGGAAAGGAAGATGGGATTCTGGTGGTCTCCTGATAGCAAACACCTTGCATTTACTGAAGTTGACTCATCTGAAATCCCACTGTATAGAATTATGCACCAGGGTAAAAGTTCGGTTGGTCCAGATGCTCAAGAAGATCATGCTTACCCCTTTGCAGGGGCTGCTAATGTCAAAGTGCGCCTTGGAGTTGTTTCTTCCCATGGAGGAGAAATAACTTGGATGGATCTCCTATGTGGAGAACCAAATAGTATCCATGGTGATGAAGAATATCTTGCTAGAGTAAACTGGATGCATAATAGTGCTATTGCTGTTCAAGTTCTCAATAGAACTCACTCAAAACTTAAGCTACTTAAGTTTGACATCGCTTCAGGTAAAAGGGAGGTCATACTAGAGGAAGAGCATGATACGTGGATAACATTGCACGATTGTTTTACTCCTCTGGATAAAGGAGTGAATAGTAAACATCCAGGTGGATTTATTTGGGCCAGTGAGAAGACAGGATTTAGACACCTGTATCTTCATGACAAGAATGGTGTGTGCTTGGGGCCCCTCACACAAGGTGATTGGATGATCGACCAAATTGCTGGTGTCAATGAGAGTTCTGGAGTTATATATTTTACAGGCACATTGGATGGGCCATTGGAGACAAATCTTTACTCCACCAACCTATTTCCGGATTGGAGCCTTCCCTTGCAAGTCCCCAAGAGGTTGACTCATGGCACAGGACGTCATTCAGTAATTCTTGACCATCAGTTGCTGAGGTTTATTGATGTGTATGACTCAATAAAATCTCCACCTGTGATCCTGCTATGCTCTTTGCTTGATGGAAGTGTGATAATGCCTCTATATGAGCAGCCTCTGACTGTTCAGCCGCTTAAAAAGTTTCAGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTC GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA CTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAG AACCTCCGAGGGAGGCTGCTGCTGATCCA CGGTATGATAGACGAGAACGTGCATTTCAGGCACACGGCGAGGCTCATCAACTCGCTGATGGCGGAGGGGAAGCCCTACGATATCCTCCTCTTCCCCGACGAGAGGCACATGCCGCGCCGGTTAGGGGACC GGATCTATATGGAAGAGAGGATCTGGGATTTTGT AGAGAGGAACCTGTGAATGTGAAGAGAGGAAGAGAGAGAGAGAACT ACCTGTGGTGTATAAATCTTTTGCTCGCTGTGGGCATGACTTGGGAT GTT GTTACA GTATGTTGAAGCTATTTCATT TCCATCATCATCATCTGT ]
[+] EMBL AK060335 [ AAACTGGATGCATAATAGTGCTATTGCTGTTCAAGTTCTCAACAGAACTCACTCAAAACTTAAGCTACTTAAGTTTGACATCGCTTCAGGTAAAAGGGAGGTCATACTAGAGGAAGAGCATGATACGTGGATAACATTGCACGATTGTTTTACTCCTCTGGATAAAGGAGTGAATAGTAAACATCCAGGTGGATTTATTTGGGCCAGTGAGAAGACAGGATTTAGACACCTGTATCTTCATGACAAGAATGGTGTGTGCTTGGGGCCCCTCACACAAGGTGATTGGATGATCGACCAAATTGCTGGTGTCAACGAGAGTTCTGGAGTTATATATTTTACAGGCACATTGGATGGGCCATTGGAGACAAATCTTTACTCCACCAACCTATTTCCGGATTGGAGCCTTCCCTTGCAAGTCCCCAAGAGGTTGACTCATGGCACAGGACGTCATTCAGTAATTCTTGACCATCAGTTGCTGAGGTTTATTGATGTGTATGACTCAATAAAATCTCCACCTGTGATCCTGCTATGCTCCTTGCTTGATGGAAGTGTGATAATGCCTCTATATGAGCAGCCTCTGGCTGTTCAGCCGCTTAAAAAGTTTCAGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTC GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA CTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAG AACCTCCGAGGGAGGCTGCTGCTGATCCA CGGTATGATAGACGAGAACGTGCATTTCAGGCACACGGCGAGGCTCATCAACTCGCTGATGGCGGAGGGGAAGCCCTACGATATCCTCCTCTTCCCCGACGAGAGGCACATGCCGCGCCGGTTAGGGGACC GGATCTATATGGAAGAGAGGATCTGGGATTTTGT AGAGAGGAACCTGTGAATGTGAAGAGAGGAAGAGAGAGAGAGAACT ACCTGTGGTGTATAAATCTTTTGCTCGCTGTGGGCATGACTTGGGAT GTT GTTACA GTATGTTGAAGCTATTTCATT TCCATCATCATCATCTGTAGTTATCCGCAGACTCCAGGGATATGATTCTTTTGGCTGTGATAAGGATGGCAGATAGATGTTAATTTCACATTGCCTTCC]
[+] EMBL CB668157 [ ATTGGACACAAATCTTTACTCCACCAACCTATTTCCGGATTGGAGCCTTCCCTTGCAAGTCCCCAAGAGGTTGACTCATGGCACAGGACGTCATTCAGTAATTCTTGACCATCAGTTGCTGAGGTTTATTGATGTGTATGACTCAATAAAATCTCCACCTGTGATCCTGCTATGCTCTTTGCTTGATGGAAGTGTGATAATGCCTCTATATGAGCAGCCTCTGACTGTTCAGCCGCTTAAAAAGTTTCAGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTC GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA CTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAGAAACCTCCGAGGGAag ]
[+] EMBL CA764172 [ ggggGGGGACTTGCAAGGGAAGGCTCCAAGAGGTTGACTCATGGCACAGGACGTCATTCAGTAATTCTTGACCATCAGTTGCTGAGGTTTATTGATGTGTATGACTCAATAAAATCTCCACCTGTGATCCTGCTATGCTCTTTGCTTGATGGAAGTGTGATAATGCCTCTATATGAGCAGCCTCTGACTGTTCAGCCGCTTAAAAAGTTTCAGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTC GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA CTTTCTATACCGAGAAGTACATGGGTCTGNCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAN AACCTCCGAGGAAGGCTGCTGCTGATCCA CGGTNTGATAGACGAGAACGNGCATTTNAGGCCCCCGGNGAGGCTCATNAACTTGCTGATGGCGGA GGGNANCCCTACGATATCCTnc ]
[+] EMBL OSS2577A [ ccGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTCGGGCAATGTGCCTCGCGGGGTTTTCCCGACAC ]
[+] EMBL OSS4388A [ ccGCAGCTGTCTCCAGAGATAGTACAGATTGAAGGAAAGGATGGGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCCATACAAAACACTCGTTAACGTTTATGGNGGTCCCAGTGTCCAGCTTGTAAGTGACTCATGGATAAGTACAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGNGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATC ]
[+] EMBL OSS3055A [ ccGCAGCTGTCTCCAGAGATAGTACAGATTGANGGAAAGGATGAGACTGCTTTATATGGAACTCTTTATCTCCCTGATGAGAAAAAATATGGACCACCCCNATACAAAACACTCGTTAACGTTTATGGCGGTCCCAGTGTCCAGCTTGTAAGTNACTCATGGATAAGTACAGTTGTNATGAGAGCTCAGTTCCTGCGTAGTAAGGGT ]
[-] EMBL CB668158 [ CAGTTGACATGAGAGCTCAGTTCCTGCGTAGTAAGGGTATATTAGTTTGGAAGATGGACAATCGAGGAACCGCAAGACGCGGTTTGCAGTTTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTC GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA CTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAG AACCTCCGAGGGAGGCTGCTGCTGATCCA CGGTATGATAGACGAGAACGTGCATTTCAGGCACACGGCGAGGCTCATCAACTCGCTGATGGCGGAGGGGAAGCCCTACGATATCCTCCTCTTCCCCGACGAGAGGCACATGCCGCGCCGGTTAGGGGACC GGATCTATATGGAAGAGAGGATCTGGGATTTTGT AGAGAGGAACCTGTGAATGTGAAGAGAGGAAGAGAGAGAGAGAACT ACCTGTGGTGTATAAATCTTTTGCTCGCTGTGGGCATGACTTGGGAT GTT GTTACA GTATGTTGAAGCTATTTCATT TCCATCATCATCATCTGTAGTTATCCGCAGACTCCAGGGATATGATTCTTTTGGGGGTGATAAGGATGGCAGATAGATGTTAATTTCA ]
[-] EMBL CA762393 [ tnTGGAAGATGGACAATCGAGGAACCGCAGGACGCGGTNTGCAGTNTGAGGGACAGCTCAAATACAACATCGGTCGTGTCGATGCTGAAGATCAGTTAGCAGGTGCCGAGTGGCTAATAAAGAAAGGCCTA GC AAAACCCGGACATATAGGTCTCTAC GGCTGGAGCTATGGTGGCTTTCTCTN GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCAGTTGTGCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACA CTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAG AACCTCCGAGGGAGGCTGCTGCTGATCCA CGGTATGATAGACGAGAACGTGCATTTCAGGCACACGGCGAGGCTCATCAACTCGCTGATGGCGGAGGGGAAGCCCTACGATATCCTCCTCTTCCCCGACGAGAGGCACATGCCGCGCCGGTTAGGGGACC GGATCTATATGGAAGAGAGGATCTGGGATTTTGT AGAGAGGAACCTGTGAATGTGAAGAGAGGAAGAGAGAGAGAGAACT ACCTGTGGTGTATAAATCTTTTGCTCGCTGTGGGCATGACTTGGGAT GTT GTTACA GTATGTTGAAGCTATTTCATT TCCATCATCATCATCTGTAGTTAaaaaa ]
[+] EMBL BI805523 [ GCTCANAT CNACATCGTTCGTGTCGAT CTGAAGATCAGTTACCA GTGCCGAGTGGCTAATAAAGAAAGGCCTACACTAAAACCCGGACATATAGGTCTCTACAGGCTGGAGCTATGGTGGCTTTCTCTC GGCAATGTGCCTCGC GAGATTTCCCGACACGTTCA TTGTCCAGTTTCTGGCGCTCCGGTGACAGCATGGGATGGGTATGACACCTTTCTATACCGAGAAGTACATGGGTCTGCCCTCGGAGCAGCGCGACGCTTACAGATACGGGTCGATCATGCATCATGTGAAG AACCTCCGAGGGAGGCTGCTGCTGATCCACCGGTATGATAGACGAGAACGTGCATTTCAGGCACACGGCGAGGCTCATCAACTCGCTGATGGCGGAGGGGAAGCCCTACGATATCCTCCTCTTCCCCGACGAGAGGCACATGCCGCGCCGGTTAGGGGACCAGGATCTATATGGAAGAGAGGATCTGGGATTTTGTGAGAGAGGAACCTGTGAAT TTAAGAGA GAAGAGAGAGAGAGAACTGACCTGTGGTGTATAAATCTTTTGCTCGCTGTGGGCATGACTTGGGATGGTTGGTTACANGTATGTTGAAGCTATTTCATTGTCCATCt ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||