cluster # 12239

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Oryza sativa
cluster # 12239 cluster # 12239 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12239#0 length = 801 sequences # 5

consensus_12239#1 length = 440 sequences # 5

consensusID : consensus_12239#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 801
fasta sequence

                              [GCGATCGGTAATGACGACGACGAACCACCTCGTCTCCCCCGCGCTGCTGCTGCTTCTCGCCCTCCTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAGCGTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGCACCCGATCTTCTTCTCCAACAACGGCGAC-ACGGAGGTGGGGC-TGGACCGGCAGGGCCTCTTC-TAC-TTC-ATCAGCGGCGT-CGCCGGCCACTGCGAGCGTGGGCANAGGATGGTCATCAAGGTCATCGGCCACGACGCGCCTCCGCCGGCCAGCCCGCCGCCGCCGCCGTCGAACGCT-CCCCCTACACCGCCTCACCCCANCGGCGCCGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGTGTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGATATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCTCGTTCATTGCAATCTCGTGTAATTCTTACTTAGA---TTTTTTTTTTGTATTTGGAATTGACTTTGGATAATTTATTTGTGACTTTGCTGAATGTTGCATCCCAAACCTTCAGTTTGCACTCGCATTTTTCTCCCGTGGAAAAA]

[+] EMBL AK071236             [GCGATCGGTAATGACGACGACGAACCACCTCGTCTCCCCCGCGCTGCTGCTGCTTCTCGCCCTCCTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAGCGTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGCACCCGATCTTCTTCTCCAACAACGGCGAC ACGGAGGTGGGGC TGGACCGGCAGGGCCTCTTC TAC TTC ATCAGCGGCGT CGCCGGCCACTGCGAGCGTGGGCAGAGGATGGTCATCAAGGTCATCGGCCACGACGCGCCTCCGCCGGCCAGCCCGCCGCCGCCGCCGTCGAACGCT CCCCCTACACCGCCTCACCCCAGCGGCGCCGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGTGTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGATATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCTCGTTCATTGCAATCTCGTGTAATTCTTACTTAGATTTTTTTTTTTTTGTATTTGGAATTGACTTTGGATAATTTATTTGTGACTTTGCTGAAT                                                   ]
[+] EMBL AU064973             [                                                                CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAGCGTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAG ACCCGATCTTCTTCTCCAACAACGGCGACAACGGAGGTGGGGCTTGGACCGG ANGGGCTCTTCTTACTTTCAATCAGCGGCGTNCGCCGGCCACTtt                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU182893             [                                                                                                                                                                                                                                                                                                                                                                                             GCANAGGATGGTCATCAAGGTCATCGGCCACGACGCGCCTCCGCCGGCCAGCCCGCCGCCGCCGCCGTCGAACGCTCCCCCCTACACCGCCTCACCCCANCGGCGCCGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGTGTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGATATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCTCGTTCATTGCAATCTCGTGTAATTCTTACTTAGA   TTTTTTTTTTGTATTTGGAATTGACTTTGGATAATTTATTTGTGACTTTGCTGAATGTTGCATCCCAAACCTTCAGTTTGCACTCGCATTTTTCTCCCGTGGAAAAA]
[+] EMBL AU183069             [                                                                                                                                                                                                                                                                                                                                                                                              CANAGGATGGTCATCAAGGTCATCGGCCACGACGCGCCTCCGCCGGCCAGCCCGCCGCCGCCGCCGTCGAACGCTCCCCCCTACACCGCCTCACCCCANCGGCGCCGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGTGTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGATATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCTCGTTCATTGCAATCTCGTGTAATTCTTACTTAGA   TTTTTTTTTTGTATTTGGAATTGACTTTGGATAATTTATTTGTGACTTTGCTGAATGTTGCATCCCAAACCTTCAGTTTGCACTCGCATTTTTCTCCCGTGGAAAAA]
[+] EMBL AU172905             [                                                                                                                                                                                                                                                                                                                                                                                               ANAGGATGGTCATCAAGGTCATCGGCCACGACGNGCCTCCGCCGGCCAGCCCGCCGCCGCCGCCGTCGAACGCT CCCCCTACACCGCCTCACCCCANCGGCGCCGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGTGTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGATATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCTCGTTCATTGCAATCTCGTGTAATTCTTACTTAGA   TTTTTTTTTTGTATTTGGAATTGACTTTGGATAATTTATTTGTGACTTTGCTGAATGTTGCATCCCAAACCTTCAGTTTGCACTCGCATTTTTCTCCCGTGGAAAAA]




>consensus_12239#0
GCGATCGGTAATGACGACGACGAACCACCTCGTCTCCCCCGCGCTGCTGCTGCTTCTCGC
CCTCCTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACA
CGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAA
CCGCTTCCTCGTCGGCGACAGCGTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGT
GACGGAAGACGACTACAACAAGTGCAAGGCGGAGCACCCGATCTTCTTCTCCAACAACGG
CGACACGGAGGTGGGGCTGGACCGGCAGGGCCTCTTCTACTTCATCAGCGGCGTCGCCGG
CCACTGCGAGCGTGGGCANAGGATGGTCATCAAGGTCATCGGCCACGACGCGCCTCCGCC
GGCCAGCCCGCCGCCGCCGCCGTCGAACGCTCCCCCTACACCGCCTCACCCCANCGGCGC
CGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGT
GTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGA
TATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCT
CGTTCATTGCAATCTCGTGTAATTCTTACTTAGATTTTTTTTTTGTATTTGGAATTGACT
TTGGATAATTTATTTGTGACTTTGCTGAATGTTGCATCCCAAACCTTCAGTTTGCACTCG
CATTTTTCTCCCGTGGAAAAA

consensusID : consensus_12239#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 440
fasta sequence

                              [CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAG-GTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGACCCGATCTTCTTCTCCAACAACGGCGACACGGAGGTGGGGCTGGA-CCGGCAGGGCCTCTTCTAC-TTCATCAGCGGCGTCGC-GGCCACTNCGAGCGTGGGCAGAGGATGGTCATC-AAGGTCATCGGCCACGACGNGCCTTCGCCGGCCAG-CCGCCGCCGCCGCCGTNGAACGTT-CCCTANAACGCTT-ACCCAGC-GNGCGCTTCGGTAAGCGCCGCGATTGCTNGGGCATGT]

[+] EMBL AU070060             [CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAGCGTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGACCCGATCTTCTTCTCCAACAACGGCGACACGGAGGTGGGGCTGGA CCGGCAGGGCCTCTTCTAC TTCATCAGCGGCGTCGC GGCCACTNCGAGCGTGGGCAGAGGATGGTCATC AAGGTCATCGGCCACGACGNGCCTTCGCCGGCCAG CCGCCGCCGCCGCCGTNGAACGTT CCCTANAACGCTT ACCCAGC GNGCGCTTCGGTAAGCGCCGCGATTGCTNGGGCATGT]
[+] EMBL AU065075             [CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAG GTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGACCCGATCTTCTTCTCCAACAACGGCGACACGGAGGTGGGGCTGGA CCGGCAGGGCCTCTTCTACTTTCATCAGCGGCGTCGC GGCCACTNCGAGCGTGGGCAGAGGATGGTCATC AAGGTCATTGGCCACGACGNGGCTTCGCCGGCCAGCCCGCCGCCGCCGCCGTNGAACGTTCCCCTANAACGCTTAACCCAGCGGGGCGCTTCGGTtan                      ]
[+] EMBL AU063783             [CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCNAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAANACGCCGGCNTGTACANCGACTGGGCGTCCAAGAACCGCTTCCTCGTNGGCNACAG TTCCATTTNAAGTACGCNAAGGACTCGGTGATGGTAGTNACGGAAGACGACTACANCAAGTGCAAGGCGGANACCCGATCTTTTTCTCCAACAACGGCGACACGGAGGTGGGGCTGGA CCGGCAGGGCCTCTTCTAC TTCATCAGCGGCGTCGCGGGCCACTNCAAGCTTGGGCAGAGGATGGTCATC AAGGTCATCGGCCACGACGNGCCTCCGCCGGCCAG CCcgc                                                                               ]
[+] EMBL AU064589             [CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAG GTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGACCCGATCTTCTTCTCCAACAACGGCGACACGGAGGTGGGGTTGGACCCGGCAGGGCCTCTTCTACTTTCATCAGCGGCGTCGC GGCCACTNCGAGCGTGGGCAGAGGATGGTCATCAAAGGTCATNGG CACGACGGGCCTTCGCCGG                                                                                         ]
[+] EMBL AU064850             [CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAG GTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGACCCGATCTTCTTCTCCAACAACGGCGACACGGAGGTGGGGCTGGA CCGGCAGNGCCTCTTCTAC TTCATCAGCGGCGTCGC GGCCACTGCGAGCGTGGGCAGAGGATGGTCA                                                                                                                           ]




>consensus_12239#1
CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGC
TGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGC
TTCCTCGTCGGCGACAGGTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGG
AAGACGACTACAACAAGTGCAAGGCGGAGACCCGATCTTCTTCTCCAACAACGGCGACAC
GGAGGTGGGGCTGGACCGGCAGGGCCTCTTCTACTTCATCAGCGGCGTCGCGGCCACTNC
GAGCGTGGGCAGAGGATGGTCATCAAGGTCATCGGCCACGACGNGCCTTCGCCGGCCAGC
CGCCGCCGCCGCCGTNGAACGTTCCCTANAACGCTTACCCAGCGNGCGCTTCGGTAAGCG
CCGCGATTGCTNGGGCATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12239#0      GCGATCGGTAATGACGACGACGAACCACCTCGTCTCCCCCGCGCTGCTGCTGCTTCTCGC 60
consensus_12239#1      ------------------------------------------------------------
                                                                                   

consensus_12239#0      CCTCCTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACA 120
consensus_12239#1      ----CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACA 56
                           ********************************************************

consensus_12239#0      CGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAA 180
consensus_12239#1      CGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAA 116
                       ************************************************************

consensus_12239#0      CCGCTTCCTCGTCGGCGACAGCGTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGT 240
consensus_12239#1      CCGCTTCCTCGTCGGCGACAG-GTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGT 175
                       ********************* **************************************

consensus_12239#0      GACGGAAGACGACTACAACAAGTGCAAGGCGGAGCACCCGATCTTCTTCTCCAACAACGG 300
consensus_12239#1      GACGGAAGACGACTACAACAAGTGCAAGGCGGAG-ACCCGATCTTCTTCTCCAACAACGG 234
                       ********************************** *************************

consensus_12239#0      CGACACGGAGGTGGGGCTGGACCGGCAGGGCCTCTTCTACTTCATCAGCGGCGTCGCCGG 360
consensus_12239#1      CGACACGGAGGTGGGGCTGGACCGGCAGGGCCTCTTCTACTTCATCAGCGGCGTCGC-GG 293
                       ********************************************************* **

consensus_12239#0      CCACTGCGAGCGTGGGCANAGGATGGTCATCAAGGTCATCGGCCACGACGCGCCTCCGCC 420
consensus_12239#1      CCACTNCGAGCGTGGGCAGAGGATGGTCATCAAGGTCATCGGCCACGACGNGCCTTCGCC 353
                       ***** ************ ******************************* **** ****

consensus_12239#0      GGCCAGCCCGCCGCCGCCGCCGTCGAACGCTCCCCCTACACCGCCTCACCCCANCGGCGC 480
consensus_12239#1      GGCCAGCC-GCCGCCGCCGCCGTNGAACGTTCCC--TANAACGC-TTACCCAGCGNGCGC 409
                       ******** ************** ***** ****  ** * *** * ****     ****

consensus_12239#0      CGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGT 540
consensus_12239#1      T------TCGGTAAGCGCCG-CGATTGCTNGGGCATGT---------------------- 440
                               ** ** ****** **    *   * *  *                       

consensus_12239#0      GTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGA 600
consensus_12239#1      ------------------------------------------------------------
                                                                                   

consensus_12239#0      TATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCT 660
consensus_12239#1      ------------------------------------------------------------
                                                                                   

consensus_12239#0      CGTTCATTGCAATCTCGTGTAATTCTTACTTAGATTTTTTTTTTGTATTTGGAATTGACT 720
consensus_12239#1      ------------------------------------------------------------
                                                                                   

consensus_12239#0      TTGGATAATTTATTTGTGACTTTGCTGAATGTTGCATCCCAAACCTTCAGTTTGCACTCG 780
consensus_12239#1      ------------------------------------------------------------
                                                                                   

consensus_12239#0      CATTTTTCTCCCGTGGAAAAA 801
consensus_12239#1      ---------------------