These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 801 fasta sequence [GCGATCGGTAATGACGACGACGAACCACCTCGTCTCCCCCGCGCTGCTGCTGCTTCTCGCCCTCCTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAGCGTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGCACCCGATCTTCTTCTCCAACAACGGCGAC-ACGGAGGTGGGGC-TGGACCGGCAGGGCCTCTTC-TAC-TTC-ATCAGCGGCGT-CGCCGGCCACTGCGAGCGTGGGCANAGGATGGTCATCAAGGTCATCGGCCACGACGCGCCTCCGCCGGCCAGCCCGCCGCCGCCGCCGTCGAACGCT-CCCCCTACACCGCCTCACCCCANCGGCGCCGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGTGTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGATATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCTCGTTCATTGCAATCTCGTGTAATTCTTACTTAGA---TTTTTTTTTTGTATTTGGAATTGACTTTGGATAATTTATTTGTGACTTTGCTGAATGTTGCATCCCAAACCTTCAGTTTGCACTCGCATTTTTCTCCCGTGGAAAAA] [+] EMBL AK071236 [GCGATCGGTAATGACGACGACGAACCACCTCGTCTCCCCCGCGCTGCTGCTGCTTCTCGCCCTCCTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAGCGTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGCACCCGATCTTCTTCTCCAACAACGGCGAC ACGGAGGTGGGGC TGGACCGGCAGGGCCTCTTC TAC TTC ATCAGCGGCGT CGCCGGCCACTGCGAGCGTGGGCAGAGGATGGTCATCAAGGTCATCGGCCACGACGCGCCTCCGCCGGCCAGCCCGCCGCCGCCGCCGTCGAACGCT CCCCCTACACCGCCTCACCCCAGCGGCGCCGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGTGTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGATATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCTCGTTCATTGCAATCTCGTGTAATTCTTACTTAGATTTTTTTTTTTTTGTATTTGGAATTGACTTTGGATAATTTATTTGTGACTTTGCTGAAT ] [+] EMBL AU064973 [ CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAGCGTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAG ACCCGATCTTCTTCTCCAACAACGGCGACAACGGAGGTGGGGCTTGGACCGG ANGGGCTCTTCTTACTTTCAATCAGCGGCGTNCGCCGGCCACTtt ] [+] EMBL AU182893 [ GCANAGGATGGTCATCAAGGTCATCGGCCACGACGCGCCTCCGCCGGCCAGCCCGCCGCCGCCGCCGTCGAACGCTCCCCCCTACACCGCCTCACCCCANCGGCGCCGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGTGTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGATATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCTCGTTCATTGCAATCTCGTGTAATTCTTACTTAGA TTTTTTTTTTGTATTTGGAATTGACTTTGGATAATTTATTTGTGACTTTGCTGAATGTTGCATCCCAAACCTTCAGTTTGCACTCGCATTTTTCTCCCGTGGAAAAA] [+] EMBL AU183069 [ CANAGGATGGTCATCAAGGTCATCGGCCACGACGCGCCTCCGCCGGCCAGCCCGCCGCCGCCGCCGTCGAACGCTCCCCCCTACACCGCCTCACCCCANCGGCGCCGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGTGTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGATATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCTCGTTCATTGCAATCTCGTGTAATTCTTACTTAGA TTTTTTTTTTGTATTTGGAATTGACTTTGGATAATTTATTTGTGACTTTGCTGAATGTTGCATCCCAAACCTTCAGTTTGCACTCGCATTTTTCTCCCGTGGAAAAA] [+] EMBL AU172905 [ ANAGGATGGTCATCAAGGTCATCGGCCACGACGNGCCTCCGCCGGCCAGCCCGCCGCCGCCGCCGTCGAACGCT CCCCCTACACCGCCTCACCCCANCGGCGCCGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGTGTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGATATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCTCGTTCATTGCAATCTCGTGTAATTCTTACTTAGA TTTTTTTTTTGTATTTGGAATTGACTTTGGATAATTTATTTGTGACTTTGCTGAATGTTGCATCCCAAACCTTCAGTTTGCACTCGCATTTTTCTCCCGTGGAAAAA] consensusID : consensus_12239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 440 fasta sequence [CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAG-GTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGACCCGATCTTCTTCTCCAACAACGGCGACACGGAGGTGGGGCTGGA-CCGGCAGGGCCTCTTCTAC-TTCATCAGCGGCGTCGC-GGCCACTNCGAGCGTGGGCAGAGGATGGTCATC-AAGGTCATCGGCCACGACGNGCCTTCGCCGGCCAG-CCGCCGCCGCCGCCGTNGAACGTT-CCCTANAACGCTT-ACCCAGC-GNGCGCTTCGGTAAGCGCCGCGATTGCTNGGGCATGT] [+] EMBL AU070060 [CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAGCGTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGACCCGATCTTCTTCTCCAACAACGGCGACACGGAGGTGGGGCTGGA CCGGCAGGGCCTCTTCTAC TTCATCAGCGGCGTCGC GGCCACTNCGAGCGTGGGCAGAGGATGGTCATC AAGGTCATCGGCCACGACGNGCCTTCGCCGGCCAG CCGCCGCCGCCGCCGTNGAACGTT CCCTANAACGCTT ACCCAGC GNGCGCTTCGGTAAGCGCCGCGATTGCTNGGGCATGT] [+] EMBL AU065075 [CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAG GTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGACCCGATCTTCTTCTCCAACAACGGCGACACGGAGGTGGGGCTGGA CCGGCAGGGCCTCTTCTACTTTCATCAGCGGCGTCGC GGCCACTNCGAGCGTGGGCAGAGGATGGTCATC AAGGTCATTGGCCACGACGNGGCTTCGCCGGCCAGCCCGCCGCCGCCGCCGTNGAACGTTCCCCTANAACGCTTAACCCAGCGGGGCGCTTCGGTtan ] [+] EMBL AU063783 [CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCNAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAANACGCCGGCNTGTACANCGACTGGGCGTCCAAGAACCGCTTCCTCGTNGGCNACAG TTCCATTTNAAGTACGCNAAGGACTCGGTGATGGTAGTNACGGAAGACGACTACANCAAGTGCAAGGCGGANACCCGATCTTTTTCTCCAACAACGGCGACACGGAGGTGGGGCTGGA CCGGCAGGGCCTCTTCTAC TTCATCAGCGGCGTCGCGGGCCACTNCAAGCTTGGGCAGAGGATGGTCATC AAGGTCATCGGCCACGACGNGCCTCCGCCGGCCAG CCcgc ] [+] EMBL AU064589 [CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAG GTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGACCCGATCTTCTTCTCCAACAACGGCGACACGGAGGTGGGGTTGGACCCGGCAGGGCCTCTTCTACTTTCATCAGCGGCGTCGC GGCCACTNCGAGCGTGGGCAGAGGATGGTCATCAAAGGTCATNGG CACGACGGGCCTTCGCCGG ] [+] EMBL AU064850 [CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACACGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAACCGCTTCCTCGTCGGCGACAG GTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGTGACGGAAGACGACTACAACAAGTGCAAGGCGGAGACCCGATCTTCTTCTCCAACAACGGCGACACGGAGGTGGGGCTGGA CCGGCAGNGCCTCTTCTAC TTCATCAGCGGCGTCGC GGCCACTGCGAGCGTGGGCAGAGGATGGTCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12239#0 GCGATCGGTAATGACGACGACGAACCACCTCGTCTCCCCCGCGCTGCTGCTGCTTCTCGC 60 consensus_12239#1 ------------------------------------------------------------ consensus_12239#0 CCTCCTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACA 120 consensus_12239#1 ----CTCGGCGCATCGGTCCGGCGTGCCGGCGCCACCACCTTCGAGGTCGGTGGGGAACA 56 ******************************************************** consensus_12239#0 CGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAA 180 consensus_12239#1 CGGCTGGGCCGTGCCGCCGGCCAAAGACGCCGGCGTGTACAACGACTGGGCGTCCAAGAA 116 ************************************************************ consensus_12239#0 CCGCTTCCTCGTCGGCGACAGCGTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGT 240 consensus_12239#1 CCGCTTCCTCGTCGGCGACAG-GTCCATTTCAAGTACGCGAAGGACTCGGTGATGGTAGT 175 ********************* ************************************** consensus_12239#0 GACGGAAGACGACTACAACAAGTGCAAGGCGGAGCACCCGATCTTCTTCTCCAACAACGG 300 consensus_12239#1 GACGGAAGACGACTACAACAAGTGCAAGGCGGAG-ACCCGATCTTCTTCTCCAACAACGG 234 ********************************** ************************* consensus_12239#0 CGACACGGAGGTGGGGCTGGACCGGCAGGGCCTCTTCTACTTCATCAGCGGCGTCGCCGG 360 consensus_12239#1 CGACACGGAGGTGGGGCTGGACCGGCAGGGCCTCTTCTACTTCATCAGCGGCGTCGC-GG 293 ********************************************************* ** consensus_12239#0 CCACTGCGAGCGTGGGCANAGGATGGTCATCAAGGTCATCGGCCACGACGCGCCTCCGCC 420 consensus_12239#1 CCACTNCGAGCGTGGGCAGAGGATGGTCATCAAGGTCATCGGCCACGACGNGCCTTCGCC 353 ***** ************ ******************************* **** **** consensus_12239#0 GGCCAGCCCGCCGCCGCCGCCGTCGAACGCTCCCCCTACACCGCCTCACCCCANCGGCGC 480 consensus_12239#1 GGCCAGCC-GCCGCCGCCGCCGTNGAACGTTCCC--TANAACGC-TTACCCAGCGNGCGC 409 ******** ************** ***** **** ** * *** * **** **** consensus_12239#0 CGCCTCCGCGCTAGGCGCCGGCGGACTCGCCGTCGCGGCCATGCTGCTGCCGGTCTTCGT 540 consensus_12239#1 T------TCGGTAAGCGCCG-CGATTGCTNGGGCATGT---------------------- 440 ** ** ****** ** * * * * consensus_12239#0 GTACGGTGTCTGATGGTCACCGTAGCTGCATGCACCTGCGTGCATGCCCGATCGAATTGA 600 consensus_12239#1 ------------------------------------------------------------ consensus_12239#0 TATCGTCTTGTAGATTGTCAGGTCTTTGCGAGTGTTATGCTTAGTGATTTTTGACGTGCT 660 consensus_12239#1 ------------------------------------------------------------ consensus_12239#0 CGTTCATTGCAATCTCGTGTAATTCTTACTTAGATTTTTTTTTTGTATTTGGAATTGACT 720 consensus_12239#1 ------------------------------------------------------------ consensus_12239#0 TTGGATAATTTATTTGTGACTTTGCTGAATGTTGCATCCCAAACCTTCAGTTTGCACTCG 780 consensus_12239#1 ------------------------------------------------------------ consensus_12239#0 CATTTTTCTCCCGTGGAAAAA 801 consensus_12239#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||