These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2229 fasta sequence [TAAACAATACACACAAAAGTCTCGACCCGTTTCGCCCCGACCGGTCGCCGCGCCACCACCCACTCCCCCTCAAACACCGGCGGTGGTCATGCCGCCTCCGCCTCCTCCTCCGCCGCCGCCGCCGCCGTCTCCTCCTCGCCTTCCTCTCACCGCCCACCGCCTCCCTCTCCCGCCCGCGACCTCGCCCCCCGCCTCGCTCCTCCTCGCGCCGCGCCCTTCCCCCACCCGCGCGCTCGCGCTCCTCTTCCCGGACTCCTCCGCGCGCCTCCTCCCCTCCCTGCCGCCCGCCGCCTCGCTCCCCGCCACCGCCGTCCCCTCCCCGCTCGCCGCTGCCGCCTGCTTCGTGCTCCTGCTGCCCTCCTCCCACCTCCTCTTCCTCTCCGCGCACCCGTCCCCTTCCTCCCCCGCGGCCCACCTCCGCGCCTACTCCCTCGCCTCCGGCCGCTTCTCGCCCGCCCCGCTCTCCTTCAAGCGCCAGGCCTCCGCCTCGGGGCTGCCCCTGCACGGCCTCCCGTTCGGCCTCGGCGTCCGCCTCGCCGGCGGGGTCAACGCCGTGGCTCTGCTGTCCCTCTCCGCCGGGCAGATCTGGGTGCTAGCCCCAGGGATGGCTGCGGACGGGCGCACGGTGGAGCTGCACAAGTGCGCGGTCGTCGAGCTCGAGCCGTCGCGGCCGGTGTACGCCATGGAGGTTGCCATGGGGAGGCTGCTCCTCGGTGAGGCTGGTGGTTTGCGCGTGTTCCCGCTACAAGGCTTGATGAAGAGTGGGAAAGAGAGGCAGGTGAGGAAGGAGGGTGCGGGGGCAGCAGTAAGGAAGAGCCTGCACAAGAAGAATGGAATTCGGAATGGTTTTATTGTGCCAATTGGGCATGGCGGTAGCGAGGGAGGTGGCAAACGAGAAGCTGTTTCCACTCGTAAGCTGGCAACTTTGAGAGTAAAACAGACTTCAGGGAGCTATTTCTCTTTCTTTTCCTCATGTAGTTCTGAGGATCATCATAACTCACAAGGTGCCGTAGAAGTGAAAAATGTAGTGAAAGTTGTTTCAATCCGTCCTCTTTCCAAGGACAAGTTTTTGGTCCTTGATTCAGCTGGATTGTTACATGTATTCAGTCTTCAAAACAAAGAATTGCTCTCAGAAGCTACTAGCAAGAGATATAGTGGAAATCACACACACTGTTTGGATAATGCCATGAAAGTGCAGCTATTTGCTGTCTTTCCAAGTAGCTCTACAAAGACAGAAATCTTTTGGATTTCGGATGGTGGGCATTCCATACACATAATGTCAGCACTTGATGTTGAACCCCCCAACAGTGATAATGGAGGTGGTGATGGAGAAAGAGAATCAACAACCATTAAGCTCACAGCTATTGAAGCAATCTTTACAAGTGAAAAGGTTCAGGACATTGTGCCTATCTCCAAGGATTCAGTCCTTATCCTTGGTCAAGGCAACATGTTTTTGTATGGAACTTCTTGAA-TTTTGTTGATTATATCATATATTCGGTGGGAGATGTG-AATGTTTGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGGTGTTGGAGATTTTGAAGAATGCAGTTGTTCACCTGTCTTTGAAGTCATGAGTATCATTAGTCTTTAATTTCAGTTAGCAGATGAAATACTCGAGACTTCAACAGCCAGCAAGAGTTGAAAGGTGCAGGCCGTTCTCCATCTTGTCAACTGTCTGAAAGCAACATTACAAAACTATAGGTCTTTCAGCACAGTTCACAAGCCACAGCAACTTCTGAACAGGTGAAGCCAGATTATTCCCAGAATACAACCACCCAGTTGTTTTTGCATACACATTTTGCGTGCCAGGACAACTGCAGTTCTGGTTGCGATATCTGGAAGAAGATAAGGCTGCAATCCTATGCCCAGCTCAGCTGTTGTGGAACGTGGATCATCATCAAGTGGGTCGGTTATGAAGCTACAGGTTTGGTGCTCCACAAGGAGGTTGATCAGTTCAGAGACTGGACCTTGAGTCCATGGTGTCCTGGAGTTCAGCGAGTATTTTCGTTCCAAGTGCCAGGCCCCGAGGACTTCAGAAACCAATAATGTATTTGCCATGTTCAATGTCAGGTTTTCACAATGCGCACGCTAGTACGGTGTGAGCTTGCAAACATTTACCCGTTGTGCCTGTTTCTGAAATCAAAATCTAGTTATTTGCCCCGTTTGGAAA----AAAAAAAAAAAAAAAAAA] [+] EMBL AK066673 [TAAACAATACACACAAAAGTCTCGACCCGTTTCGCCCCGACCGGTCGCCGCGCCACCACCCACTCCCCCTCAAACACCGGCGGTGGTCATGCCGCCTCCGCCTCCTCCTCCGCCGCCGCCGCCGCCGTCTCCTCCTCGCCTTCCTCTCACCGCCCACCGCCTCCCTCTCCCGCCCGCGACCTCGCCCCCCGCCTCGCTCCTCCTCGCGCCGCGCCCTTCCCCCACCCGCGCGCTCGCGCTCCTCTTCCCGGACTCCTCCGCGCGCCTCCTCCCCTCCCTGCCGCCCGCCGCCTCGCTCCCCGCCACCGCCGTCCCCTCCCCGCTCGCCGCTGCCGCCTGCTTCGTGCTCCTGCTGCCCTCCTCCCACCTCCTCTTCCTCTCCGTGCACCCGTCCCCTTCCTCCCCCGCGGCCCACCTCCGCGCCTACTCCCTCGCCTCCGGCCGCTTCTCGCCCGCCCCGCTCTCCTTCAAGCGCCAGGCCTCCGCCTCGGGGCTGCCCCTGCACGGCCTCCCGTTCGGCCTCGGCGTCCGCCTCGCCGGCGGGGTCAACGCCGTGGCTCTGCTGTCCCTCTCCGCCGGGCAGATCTGGGTGCTAGCCCCAGGGATGGCTGCGGACGGGCGCACGGTGGAGCTGCACAAGTGCGCGGTCGTCGAGCTCGAGCCGTCGCGGCCGGTGTACGCCATGGAGGTTGCCATGGGGAGGCTGCTCCTCGGTGAGGCTGGTGGTTTGCGCGTGTTCCCGCTACAAGGCTTGATGAAGAGTGGGAAAGAGAGGCAGGTGAGGAAGGAGGGTGCGGGGGCAGCAGTAAGGAAGAGCCTGCACAAGAAGAATGGAATTCGGAATGGTTTTATTGTGCCAATTGGGCATGGCGGTAGCGAGGGAGGTGGCAAACGAGAAGCTGTTTCCACTCGTAAGCTGGCAACTTTGAGAGTAAAACAGACTTCAGGGAGCTATTTCTCTTTCTTTTCCTCATGTAGTTCTGAGGATCATCATAACTCACAAGGTGCCGTAGAAGTGAAAAATGTAGTGAAAGTTGTTTCAATCCGTCCTCTTTCCAAGGACAAGTTTTTGGTCCTTGATTCAGCTGGATTGTTACATGTATTCAGTCTTCAAAACAAAGAATTGCTCTCAGAAGCTACTAGCAAGAGATATAGTGGAAATCACACACACTGTTTGGATAATGCCATGAAAGTGCAGCTATTTGCTGTCTTTCCAAGTAGCTCTACAAAGACAGAAATCTTTTGGATTTCGGATGGTGGGCATTCCATACACATAATGTCAGCACTTGATGTTGAACCCCCCAACAGTGATAATGGAGGTGGTGATGGAGAAAGAGAATCAACAACCATTAAGCTCACAGCTATTGAAGCAATCTTTACAAGTGAAAAGGTTCAGGACATTGTGCCTATCTCCAAGGATTCAGTCCTTATCCTTGGTCAAGGCAACATGTTTTTGTATGGAACTTCTTGAA TTTTGTTGATTATATCATATATTCGGTGGGAGATGTG AATGTTTGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGGTGTTGGAGATTTTGAAGAATGCAGTTGTTCACCTGTCTTTGAAGTCATGAGTATCATTAGTCTTTAATTTCAGTTAGCAGATGAAATACTCGAGACTTCAACAGCCAGCAAGAGTTGAAAGGTGCAGGCCGTTCTCCATCTTGTCAACTGTCTGAAAGCAACATTACAAAACTATAGGTCTTTCAGCACAGTTCACAAGCCACAGCAACTTCTGAACAGGTGAAGCCAGATTATTCCCAGAATACAACCACCCAGTTGTTTTTGCATACACATTTTGCGTGCCAGGACAACTGCAGTTCTGGTTGCGATATCTGGAAGAAGATAAGGCTGCAATCCTATGCCCAGCTCAGCTGTTGTGGAACGTGGATCATCATCAAGTGGGTCGGTTATGAAGCTACAGGTTTGGTGCTCCACAAGGAGGTTGATCAGTTCAGAGACTGGACCTTGAGTCCATGGTGTCCTGGAGTTCAGCGAGTATTTTCGTTCCAAGTGCCAGGCCCCGAGGACTTCAGAAACCAATAATGTATTTGCCATGTTCAATGACAGGTTTTCACAATGCGCACGCTAGTACGGTGTGAGCTTGCAAACATTTACCCGTTGTGCCTGTTTCTGAAATCAAAATCTAGTTATT ] [+] EMBL CB674926 [ TCAAACACCGGCGGAGGTCATGCCGCCTCCGCCTCCTCCTCCGCCGCCGCCGCCGCCGTCTCCTCCTCGCCTTCCTCTCACCGCCCACCGCCTCCCTCTCCCGCCCGCGACCTCGCCCCCCGCCTCGCTCCTCCTCGCGCCGCGCCCTTCCCCCACCCGCGCGCTCGCGCTCCTCTTCCCGGACTCCTCCGCGCGCCTCCTCCCCTCCCTGCCGCCCGCCGCCTCGCTCCCCGCCACCGCCGTCCCCTCCCCGCTCGCCGCTGCCGCCTGCTTCGTGCTCCTGCTGCCCTCCTCCCACCTCCTCTTCCTCTCCGCGCACCCGTCCCCTTCCTCCCCCGCGGCCCACCTCCGCGCCTACTCCCTCGCCTCCGGCCGCTTCTCGCCCGCCCCGCTCTCCTTCAAGCGCCAGGCCTCCGCCTCGGGGCTGCCCCTGCACGGCCTCCCGTTCGGCCTCGGCGTCCGCCTCGCCGGCGGGGTCAACGCCGTGGCTCTGCTGTCCCTCTCCGCCGGGCAGATCTGGGTGCTAGCCCCAGGGATGGCTGCGGACGGGCGCACGGTGGAGCTGCACAAGTGCGCGGTCGTCGAGCTCGAGCCGTCGCGGCCGGTGTACGCCATGGAGGTTGCCATGGGGAGGCTGCTCCTCGGTGAGGCTGGTGGTTTGCGCGTGTTCCCGCTACA ] [+] EMBL CB640618 [ GCCTCCTCCTCCGCCGCCGCCGCCGCCGTCTCCTCCTCGCCTTCCTCTCACCGCCCACCGCCTCCCTCTCCCGCCCGCGACCTCGCCCCCCGCCTCGCTCCTCCTCGCGCCGCGCCCTTCCCCCACCCGCGCGCTCGCGCTCCTCTTCCCGGACTCCTCCGCGCGCCTCCTGCCCTCCCTGCCGCCCGCCGCCTCGCTCCCCGCCACCGCCGTCCCCTCCCCGCTCGCCGCTGCCGCCGGCTGCGTGCTCCTGCTGCCCTCCTACCACCTCCTCTTCCTCTCCGCGCACCCGTCCGCTTCCTCCCGCGCGGCCCACCTCCGCGCCTACTCCCTCGCCTCCGGCCGCTTCTCGCCCGCCCCGCTCTCCTTGAAGCGCCACGCCTCCGCCTAGGGGCTGCCCCTGCACGGACTGCCGGGCGGCCTCGGCGT ] [+] EMBL CB685616 [ CCGCCTCCTCGCCCCCCGCCTCGCTCCTCCTCGCGCCGCGCCCTTCCCCCACCCGCGCGCTCGCGCTCCTCTTCCCGGACTCCTCCGCGCGCCTCCTCCCCTCCCTGCCGCCCGCCGCCTCGCTCCCCGCCACCGCCGTCCCCTCCCCGCTCGCCGCTGCCGCCTGCTTCGTGCTCCTGCTGCCCTCCTCCCACCTCCTCTTCCTCTCCGCGCACCCGTCCCCTTCCTCCCCCGCGGCCCACCTCCGCGCCTACTCCCTCGCCTCCGGCCGCTTCTCGCCCGCCCCGCTCTCCTTCAAGCGCCAGGCCTCCGCCTCGGGGCTGCCCCTGCACGGCCTCCCGTTCGGGCTCGGCGTCCGCCTCGCCGGCGGGGGCAACGCCGTGGCTCTGCTGTCCCTCTCCGCCGGGCAGATCTGGGTGCTAGCCCCAGGGATGGCTGCGGACGGGCGCACGGag ] [+] EMBL CA766844 [ CCTCGGTGAGGCTGGTGGTTTGCGCGTGTTCCCGCTACAAGGCTTGATGAAGAGTGGGAAAGAGAGGCAGGTGAGGAAGGAGGGTGCGGGGGCAGCAGTAAGGAAGAGCCTGCACAAGAAGAATGGAATTCGGAATGGTTTTATTGTGCCAATTGGGCATGGCGGTAGCGAGGGAGGTGGCAAACGAGAAGCTGTTTCCACTCGTAAGCTGGCAACTTTGAGAGTAAAACAGACTTCAGGGAGCTATTTCTCTTTCTTTTCCTCATGTAGTTCTGAGGATCATCATAACTCACAAGGTGCCATAGAAGTGAAAAATGTAGTGAAAGTTGTTTCAATCCGTCCTCTTTCCAAGGACAAGTTTTTGGTCCTTGATTCAGCTGGATTGTTACATGTATTCAGTCTTCAAAACAAAGAATTGCTCTCAGAAGCTACTAGCAAGAGATATAGTGGAAATCACACACACTGTTTGGATAATGCCATGAAAGTGCAGCTATTTGCTGTCTTTCCAAGTAGCTCTACAAAGACAGAAATCTTTTGGATTTCGGATGGTGGGCATTCCATACACATAATGTCAGCACTTGATGTTGAACCCCCCAACAGTGATAATGGAGGTGGTGATGGAGAAAGAGAATCAACAACCATTAAGCTCACAGCTATTGAAGCAATCTTTACAAGTGAAAAGGNTCAGGACATTGTGCCTATCTCCAAGGATTCAGTCCTTATCCTTGGTCAAGGCAACATGNTTTTGTATGGAACTTCTTGAATTTTTGTTGGNTATATCATATATTCGGNGGGAGATGNGAAAGGTTGGNCTAGATC ] [-] EMBL CB685617 [ CTTATCCTTGGTCAAGGCAACATGTTTTTGTATGGAACTTCTTGAA TTTTGTTGATTATATCATATATTCGGTGGGAGATGTG AATGTTTGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGGTGTTGGAGATTTTGAAGAATGCAGTTGTTCACCTGTCTTTGAAGTCATGAGTATCATTAGTCTTTAATTTCAGTTAGCAGATGAAATACTCGAGACTTCAACAGCCAGCAAGAGTTGAAAGGTGCAGGCCGTTCTCCATCTTGTCAACTGTCTGAAAGCAACATTACAAAACTATAGGTCTTTCAGCACAGTTCACAAGCCACAGCAACTTCTGAACAGGTGAAGCCAGATTATTCCCAGAATACAACCACCCAGTTGTTTTTGCATACACATTTTGCGTGCCAGGACAACTGCAGTTCTGGTTGCGATATCTGGAAGAAGATAAGGCTGCAATCCTATGCCCAGCTCAGCTGTTGTGGAACGTGGATCATCATCAAGTGGGTCGGTTATGAAGCTACAGGTTTGGTGCTCCACAAGGAGGTTGATCAGTTCAGAGACTGGACCTTGAGTCCATGGTGTCCTGGAGTTCAGCGAGTATTTTCGTTCCAAGTGCCAGGCCCCGAGGACTTCAGAAACCAATAATGTATTTGCCAGGTTCAATGTCAGGTTTTCACAATGCGCACGCTAGTACGGTGTGAGCTTGCAAACATTTACCCGTTGTGCCTATGTCTGAAATCAAAATCTAGTTA ] [-] EMBL CB674927 [ cacacATTATCTTTGGTATCAGGTGGGAGATGTG AATGTTTGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGGTGTTGGAGATTTTGAAGAATGCAGTTGTTCACCTGTCTTTGAAGTCATGAGTATCATTAGTCTTTAATTTCAGTTAGCAGATGAAATACTCGAGACTTCAACAGCCAGCAAGAGTTGAAAGGTGCAGGCCGTTCTCCATCTTGTCAACTGTCTGAAAGCAACATTACAAAACTATAGGTCTTTCAGCACAGTTCACAAGCCACAGCAACTTCTGAACAGGTGAAGCCAGATTATTCCCAGAATACAACCACCCAGTTGTTTTTGCATACACATTTTGCGTGCCAGGACAACTGCAGTTCTGGTTGCGATATCTGGAAGAAGATAAGGCTGCAATCCTATGCCCAGCTCAGCTGTTGTGGAACGTGGATCATCATCAAGTGGGTCGGTTATGAAGCTACAGGTTTGGTGCTCCACAAGGAGGTTGATCAGTTCAGAGACTGGACCTTGAGTCCATGGTGTCCTGGAGTTCAGCGAGTATTTTCGTTCCAAGTGCCAGGCCCCGAGGACTTCAGAAACCAATAATGTATTTGCCATGTTCAATGTCAGGTTTTCACAATGCGCACGCTAGTACGGTGTGAGCTTGCAAACATTTACCCGTTGTGCCTGTTTCTGAAATCAAAATCTAGTTATTTGCCCCGTTTGGAAA gt ] [-] EMBL CA761321 [ GATGGGTTTTTGGCTGAAGACAGGTGTTGGAGATTTTAAAGAATGCAGTTGTTCCCCCGTCTTTGAAGTCATGAGTATCATTAGTCTCTAATTTCAGTTAGCAGATGAAATACTCGAGACTTCAACAGCCAGCAAGAATTGAAAGGTGCAGGCCGTTCTCCATCTTGTCAACTGTCTGAAAGCAACATTACAAAACTATAGGTCTTTCAGCACAGTTCACAAGCCACAGCAACTTTTGAACAGGTGAAGCCAGATTATTCCCAGAATACAACCACCCAGTTGTTTTTGCATACACATTTTGCGTGCCAGGACAACTGCAGTTCTGGTTGCGATATCTGGAAGAAGATAAGGCTGCAATCCTATGCCCAGCTCAGCTGTTGTGGAACGTGGATCATCATCAAGTGGGTCGGTTATGAAGCTACAAGTTTGGTGCTCCCCAAGGAGGTTGATCAGTTCAGAGACTGGACCTTGAGTCCATGGTGTCCTGGAGTTCAGCGAGTATTTTCGTTCCAAGTGCCAGGCCCCGAGGACTTCAGAAACCAATAATGTATTTGCCATGTTCAATGTCAGGTTTTCACAATGCGCACG AGTACGGTGTGAGCTTGCAAACATTTACCCGTTGTGCCTGTTTCTGAAATCAAAATCTAGTTATTTGCCCCGTTTGGAAAGTTTAAAAAAAAAAAAAAAAAA] [-] EMBL CA760991 [ GATGGGTTTTTGGCTGAAGACAGGTGTTGGAGATTTTAAAGAATGCAGTTGTTCCCCCGTCTTTGAAGTCATGAGTATCATTAGTCTCTAATTTCAGTTAGCAGATGAAATACTCGAGACTTCAACAGCCAGCAAGAATTGAAAGGTGCAGGCCGTTCTCCATCTTGTCAACTGTCTGAAAGCAACATTACAAAACTATAGGTCTTTCAGCACAGTTCACAAGCCACAGCAACTTTTGAACAGGTGAAGCCAGATTATTCCCAGAATACAACCACCCAGTTGTTTTTGCATACACATTTTGCGTGCCAGGACAACTGCAGTTCTGGTTGCGATATCTGGAAGAAGATAAGGCTGCAATCCTATGCCCAGCTCAGCTGTTGTGGAACGTGGATCATCATCAAGTGGGTCGGTTATGAAGCTACAAGTTTGGTGCTCCCCAAGGAGGTTGATCAGTTCAGAGACTGGACCTTGAGTCCATGGTGTCCTGGAGTTCAGCGAGTATTTTCGTTCCAAGTGCCAGGCCCCGAGGACTTCAGAAACCAATAATGTATTTGCCATGTTCAATGTCAGGTTTTCACAATGCGCACG AGTACGGTGTGAGCTTGCAAACATTTACCCGTTGTGCCTGTTTCTGAAATCAAAATCTAGTTATTTGCCCCGTTTGGAAAGTTTAAAAAAAAAAAAAAAAAA] [+] EMBL C97754 [ TTATGAAGCTACAGGTTTGGTGCTCCACAAGGAGGTTGATCAGTTCAGAGACTGGACCTTGAGTCCATGGTGTCCTGGAGTTCAGCGAGTATTTTCGTTCCAAGTGCCAGGCCCCGAGGACTTCAGAAACCAATAATGTATTTGCCATGTTCAATGTCAGGTTTTCACAATGCGCACGCTAGTACGGTGTGAGCTTGCAAACATTTACCCGTTGTGCCTGTTTCTGAAATCAAAATCTAGTTATTTGCCCCGTTTGGAAA AAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||