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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 764 fasta sequence
[ATAGCCGCACTACCTATTATTGATAGTCATTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAACAGTACAGAGCCGGCACAGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAAAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTCACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAAATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACCTACAAGAACAAGAGTAAAGAGGCATTTGAGAAGAAGATGTCAGGAGTGGTACAGTTACAGGAGAATTCGTTAGTCGTGCCATATAAGAAGTGTTTAGGATATTTCAAGGAGAACAAAAGATCTAGTAATTCAACCACTCAGTCTTCGACTCCTTGGTTTCTTGTGATTCAGAATTCATCCTTAATTTGGTATACAAATACAATCATGCAGATTTCAACAATGAACTGCATCCTTGTATTC]
[+] EMBL CB632143 [ATAGCCGCACTACCTATTATTGATAGTCATTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAACAGTACAGAGCCGGCACAGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAAAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTCACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAAATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACCTACAAGAACAAGAGTAAAGAGGCATTTGAGAAGAAGATGTCAGGAGTGGTACAGTTACAGGAGAATTCGTTAGTCGTGCCATATAAGAAGTGTTTAGGATATTTCAAGGAGAACAAAAGATCTAGTAATTCAACCACTCAGTCTTCGACTCCTTGGTTTCTTGTGATTCAGAATTCATCCTTAATTTGGTATACAAATACAATCATGCAGATTTCAACAATGAACTGCATCCTTGTATTC]
consensusID : consensus_12256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 704 fasta sequence
[TTCGTGCAGAACGCCATCTACTCCAATCGCATCACCATCTTCTCTAAAACCTACTGCCCGTAAGCCCTCCAGGACGCCCCTTTACACGGCTCCTTTCACCTGTTTTTCTGGTTGGATTTTGGGGGAATTTTTCAGGGATGTGCGTGTGCTTGATGGTGAGGAGTGGCAGGAGTAGATGCCGCAGCGAGGAGATCTCCGGGAATAGAGAACGGGTTCATATACCGTGAATTAGGGTGGATTTGTTGTGCAGTAGATGGTGTAGTGCGAATTAGGAAGATTTGCCCTGCAATTGGAACCCAGATTGTTGAGAAATAGCTTAATTTAAGTTAAATTGAGCTTGTGAACTGTGGTCGGATAGTTTTATTTGACGGAATTTGAACATTTTGTTTGCTTAGAACTGAAAATAGTTACCAAACTGTCCATATACGAGTAGTTTTTATTCAAACTGTTGAATAGATCCAGCTATGCCTTGGTTTGCTAGATTTAACTCTATGATGTAGTATAGTCCCCACTACACCCCCTCTGGGCAGTACAAAGCCCTGGTGAATTTTGTGGAATGTATTTCAGGTAAGTTCTCTTTACATTTTTTTGGAAGATCTTTACATATTTCTGTCGAGTCTTTAAAACAAAATAAAATGGTTTGACCTACTGATACAATAGAGAAGTCTTAATACAGAGGGGGTATCCTACTCGAATTGCTGTCT]
[+] EMBL CB677522 [TTCGTGCAGAACGCCATCTACTCCAATCGCATCACCATCTTCTCTAAAACCTACTGCCCGTAAGCCCTCCAGGACGCCCCTTTACACGGCTCCTTTCACCTGTTTTTCTGGTTGGATTTTGGGGGAATTTTTCAGGGATGTGCGTGTGCTTGATGGTGAGGAGTGGCAGGAGTAGATGCCGCAGCGAGGAGATCTCCGGGAATAGAGAACGGGTTCATATACCGTGAATTAGGGTGGATTTGTTGTGCAGTAGATGGTGTAGTGCGAATTAGGAAGATTTGCCCTGCAATTGGAACCCAGATTGTTGAGAAATAGCTTAATTTAAGTTAAATTGAGCTTGTGAACTGTGGTCGGATAGTTTTATTTGACGGAATTTGAACATTTTGTTTGCTTAGAACTGAAAATAGTTACCAAACTGTCCATATACGAGTAGTTTTTATTCAAACTGTTGAATAGATCCAGCTATGCCTTGGTTTGCTAGATTTAACTCTATGATGTAGTATAGTCCCCACTACACCCCCTCTGGGCAGTACAAAGCCCTGGTGAATTTTGTGGAATGTATTTCAGGTAAGTTCTCTTTACATTTTTTTGGAAGATCTTTACATATTTCTGTCGAGTCTTTAAAACAAAATAAAATGGTTTGACCTACTGATACAATAGAGAAGTCTTAATACAGAGGGGGTATCCTACTCGAATTGCTGTCT]
[+] EMBL CB639392 [TTCGTGCAGAACGCCATCTACTCCAATCGCATCACCATCTTCTCTAAAACCTACTGCCCGTAAGCCCTCCAGGACGCCCCTTTACACGGCTCCTTTCACCTGTTTTTCTGGTTGGATTTTG ]
[+] EMBL CB636949 [ GGCTCCTTTCACCTGTTTTTCTGGTTGGATTTTGGGGGAATTTTTCAGGGATGTGCGTGTGCTTGATGGTGAGGAGTGGCAGGAGTAGATGCCGCAGCGAGGAGATCTCCGGGAATAGAGAACGGGTTCATATACCGTGAATTAGGGTGGATTTGTTGTGCAGTAGATGGTGTAGTGCAAATTAGGAAGATTTGCCCTGCAATTGGAACCCAGATTGTTGAGAAATAGCTTAATTTAAGTTAAATTGAGCTTGTGAACTGTGGTCGGATAGTTTTATTTGACGGAATTTGAACATTTTGTTTGCTTAGAACTGAAAATAGTTACCAAACTGTCCATATACGAGTAGTTTTTATTCAAACTGTTGAATAGATCCAGCTATGCCTTGGTTTGCTAGATTTAACTCTATGATGTAGTATAGTCCCCACTACACCCCCTCTGGGCAGTACAAAGCCCTGGTGAATNNTGT ]
consensusID : consensus_12256#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 645 fasta sequence
[AGTCAACTAAATTCAAGTACTTACACAAACCATAGCCGCACTACCTATTATTGATAGTCATTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAACAGTACAGAGCCGGCACAGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAGAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTAACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACGGGCAGTAGGTTTTAGAGAAGATGGTGATGCGATTGGAGTAGATGGCGTTCTGCACGAAGGCCGAANG-NAGCGCGTCGCCGCCGCGGGGTC]
[-] EMBL AK067828 [AGTCAACTAAATTCAAGTACTTACACAAACCATAGCCGCACTACCTATTATTGATAGTCATTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAACAGTACAGAGCCGGCACAGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAGAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTAACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACGGGCAGTAGGTTTTAGAGAAGATGGTGATGCGATTGGAGTAGATGGCGTTCTGCACGAA ]
[+] EMBL CB636950 [ AACCATAGCCGCACTACCTATTATTGATAGTCATTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAACAGTACAGAGCCGGCACAGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAGAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTAACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAG ]
[-] EMBL AU101847 [ tTTTTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAACAGTACAGAGCCGGCACAGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAGAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTAACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACGGGCAGTAGGTTTTAGAGAAGATGGTGATGCGATTGGAGTAGATGGCGTTCTGCACGAAGGCCGAANG NAGCGCGTCGCCGCCGCGGGGTC]
[-] EMBL CA305745 [ AGCAGTTAATAGAATATGCGCTTGACAGATGAATCACAAACATAGAAATCGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGATCCTGTGTAAAGAGAAAAGACGGCCCCCTTCTTCTCACACATGTTAGCCATACACGAGTATTTGATAGTCTTCACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGACACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACG ]
[-] EMBL AU181752 [ TGATAGTCTTAACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGTTTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACGGGCAGTAGGTTTTAGAGAAGATGGTGATGCGATTGGAGTAGATGGCGTTCTGCACGAA ]
[-] EMBL OSC8631 [ gaCCACCAACGTGCTGGCCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGCCTAGAAGAACACTTTGAATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCTCTAAATATACGCTTAGCACGCATAGAGTACGGGCAGTAGGTTTTAGAGAAGATGGTGATGCGATTGGAGTAGATGGCGTTCTGCACGAAGGCCGAAGGCGAGC CGTCGCCGCCGCGGGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12256#0 -------------------------------ATAGCCGCACTACCTATTATTGATAGTCA 29
consensus_12256#2 AGTCAACTAAATTCAAGTACTTACACAAACCATAGCCGCACTACCTATTATTGATAGTCA 60
consensus_12256#1 -TTCGTGCAGAACGCCATCTACTCCAATCGCATCACCATCTTCTCTAAAACCTACTGCCC 59
** ** * *** * * * *
consensus_12256#0 TTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAAC--AGTACAGAGC 87
consensus_12256#2 TTGTAAATACAAGGGGAATTAATAACTTATAAACACAAAGTCACAAAC--AGTACAGAGC 118
consensus_12256#1 GTAAGCCCTCCAGGACGCCCCTTTACACGGCTCCTTTCACCTGTTTTTCTGGTTGGATTT 119
* * *** * ** * * **
consensus_12256#0 CGGCACAGCAGTTAATAGA---ATATGCGCTTGACAG--ATGAATCACAAACATAAAAAT 142
consensus_12256#2 CGGCACAGCAGTTAATAGA---ATATGCGCTTGACAG--ATGAATCACAAACATAGAAAT 173
consensus_12256#1 TGGGGGAATTTTTCAGGGATGTGCGTGTGCTTGATGGTGAGGAGTGGCAGGAGTAGATGC 179
** * ** * ** ** ****** * * ** * ** ** *
consensus_12256#0 CGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGAT 202
consensus_12256#2 CGTTGTCACAACACTTCCATGCAAAAAAAACTGCTGAAGCTGCAACATTCTGTTAAGGAT 233
consensus_12256#1 CGCAGCGAGGAGATCTCCGGGAATAGAGAACGGGTTCATATACCGTGAATTAGGGTGGAT 239
** * * * * *** * * * * *** * * * * * * ****
consensus_12256#0 CCTGTGTAAAG-AGAAAAGACGGCCCCCTTC--------TTCTCACACATGTTAGCCATA 253
consensus_12256#2 CCTGTGTAAAG-AGAAAAGACGGCCCCCTTC--------TTCTCACACATGTTAGCCATA 284
consensus_12256#1 TTGTTGTGCAGTAGATGGTGTAGTGCGAATTAGGAAGATTTGCCCTGCAATTGGAACCCA 299
*** ** *** * * * ** * ** * * *
consensus_12256#0 CACGAGTATTTGATAGTCTTCACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGT 313
consensus_12256#2 CACGAGTATTTGATAGTCTTAACTACAGATCATCGCTGTGATTGGCTATTTCCAAGAAGT 344
consensus_12256#1 GATTGTTGAGAAATAGCTTAATTTAAGTTAAATTGAGCTTGTGAACTGTGGTCGGATAGT 359
* * **** * ** ** * * * ** * * ***
consensus_12256#0 TTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGG 373
consensus_12256#2 TTCTGAAGCTGTCCATTAGAATGAGCATTTGCTGTATCATCTGAGCCACCAACGTGCTGG 404
consensus_12256#1 TTTATTTGACGGAATTTGAACATTTTGTTTGCTTAGAACTGAAAATAGTTACCAAACTGT 419
** * * ** * ****** * * * * ***
consensus_12256#0 CCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGA 433
consensus_12256#2 CCATTCACGAACACCTGTGGCACAGTATGACGGCCAACTAAGTCTAGAAGAACACTTTGA 464
consensus_12256#1 CCATATACGAGTAGTTTTTATTCAA----ACTGTTGAATAGATCCAGCT--ATGCCTTGG 473
**** **** * * * ** ** * * ** ** ** * * ***
consensus_12256#0 ATTTCTCTACCATCCTCTCTGAAATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCT 493
consensus_12256#2 ATTTCTCTACCATCCTCTCTGAGATCTAGTTCAACAATATAAGGATTCTCCTTGAGATCT 524
consensus_12256#1 --TTTGCTAGATTTAACTCTATGATGTAGTATAGTCCCCACTACACCCCCTCTGGGCAGT 531
** *** * **** ** **** * * * * ** * *
consensus_12256#0 CTAAATATACGCTTAGCAC-GCATAGAGTACCTACAAGAACAAGAGTAAAGAGGCATTTG 552
consensus_12256#2 CTAAATATACGCTTAGCAC-GCATAGAGTACGGGCAGTA-------------GGTTTTAG 570
consensus_12256#1 ACAAAGCCCTGGTGAATTTTGTGGAATGTATTTCAGGTAAGTTCTCTTTAC-ATTTTTTT 590
*** * * * * * *** * **
consensus_12256#0 AGAAGAAGATGTCAGGAGTGGTACAGTTACAGGAGAATTCGTTAGTCGTGCCATATAAGA 612
consensus_12256#2 AGAAGATGGTGATGCGATTGGAGTAGATG-----GCGTTCTGCACGAAGGCCGAANGNAG 625
consensus_12256#1 GGAAGATCTTTACATATTTCTGTCGAGT---------CTTTAAAACAAAATAAAATGGTT 641
***** * * * * * *
consensus_12256#0 AGTGTTTAGGATATTTCAAGGAGAACAAAAGATCTAGTAATTCAACCACTCAGTCTTCGA 672
consensus_12256#2 CGCGTC---GCCGCCGCGGGGTC------------------------------------- 645
consensus_12256#1 TGACCTACTGATACAATAGAGAAGTCTTAATACAGAGGGGGTATCCTACTCGAATTGCTG 701
* * *
consensus_12256#0 CTCCTTGGTTTCTTGTGATTCAGAATTCATCCTTAATTTGGTATACAAATACAATCATGC 732
consensus_12256#2 ------------------------------------------------------------
consensus_12256#1 TCT--------------------------------------------------------- 704
consensus_12256#0 AGATTTCAACAATGAACTGCATCCTTGTATTC 764
consensus_12256#2 --------------------------------
consensus_12256#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||