|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1508 fasta sequence
[TCTTTTTTTTTACGAATACCAAAATAATGACAATTACCTCCCAGCCTCTTGCAAATATTACAAATTATATGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGCTGAAAATAGGAAAAGTTAGTCCACACAGATTTTTTTCCCCTCTGAATAATATGCTCATGTGTTAGGAAAACTTGAGAAAGAGCATGAGCATCTTGACACAAAAAAAAATAGAGAAGATATAATAGCACCAGGTAGATACTAGTTCCTATCATGCGCAAAAATGTGAATAAATATTTTATCACGCTTTACTGTGGAGGGCAACTTACAATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCTGCACAAAAGGAAAAGTACAAAGATAAGATTTCAGATACTTTTTATTCCTTTAGCTAGTAAAAGGAGTATAGTTACACAATGAGAAATATCCAGGACCTTGGACCTGGATAAAGAAATAAAAGAGTTCTGTCCAAGTGCTATAATGATTATTTTTCATTGATCACGCATTATCTGTTCAAGTGTGAACTACAAGGGCATACATTTGGCATGTTTAAAGTGTAAATGCTATATGAAAGTATGATAACCTTAAACTGCAATACGCCACAAAAATTTTTTACAGCATACTCCAATCAAAGTTGATATTACACAAAATAAAAATATTATAAAGCTTCCACAGTCCAGAACAAGAGATGAAAAAACTGTTAACTTATTCCAAATGTTATTTGCTGATTTTTATTGGAATCAGATCCTGCTTAAAATTCATGTTTTCATATGTAGCTCAATAATGCAGCAAAAAGTTCAGAATCCTTTTTGTTTTGTGAGGAGAAACCCATAACTGAATCAATCAAAGGTTTCCAAGTTAGGAATTCTCTCACCCTGCCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTATTAGCAGAAGCAAAACTGAGTTAGATAATTTCCATCAGTAGGCCAGAAAATGCTCAATGTATATCACATCTATTGTTTAACCATAAGAACCAAGGTAGCAAAC]
[+] EMBL CB682248 [TCTTTTTTTTTACGAATACCAAAATAATGACAATTACCTCCCAGCCTCTTGCAAATATTACAAATTATATGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGCTGAAAATAGGAAAAGTTAGTCCACACAGATTTTTTTCCCCTCTGAATAATATGCTCATGTGTTAGGAAAACTTGAGAAAGAGCATGAGCATCTTGACACAAAAAAAAATAGAGAAGATATAATAGCACCAGGTAGATACTAGTTCCTATCATGCGCAAAAATGTGAATAAATATTTTATCACGCTTTACTGTGGAGGGCAACTTACAATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCTGCACAAAAGGAAAAGTACAAAGATAAGATTTCAGATACT ]
[-] EMBL CB682247 [ TGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCTGCACAAAAGGAAAAGTACAAAGATAAGATTTCAGATACTTTTTATTCCTTTAGCTAGTAAAAGGAGTATAGTTACACAATGAGAAATATCCAGGACCTTGGACCTGGATAAAGAAATAAAAGAGTTCTGTCCAAGTGCTATAATGATTATTTTTCATTGATCACGCATTATCTGTTCAAGTGTGAACTACAAGGGCATACATTTGGCATGTTTAAAGTGTAAATGCTATATGAAAGTATGATAACCTTAAACTGCAATACGCCACAAAAATTTTTTACAGCATACTCCAATCAAAGTTGATATTACACAAAATAAAAATATTATAAAGCTTCCACAGTCCAGAACAAGAGATGAAAAAACTGTTAACTTATTCCAAATGTTATTTGCTGATTTTTATTGGAATCAGATCCTGCTTAAAATTCATGTTTTCATATGTAGCTCAATAATGCAGCAAAAAGTTCAGAATCCTTTTTGTTTTGTGAGGAGAAACCCATAACTGAATCAATCAAAGGTTTCCAAGTTAGGAATTCTCTCACCCTGCCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTATTAGCAGAAGCAAAACTGAGTTAGATAATTTCCATCAGTAGGCCAGAAAATGCTCAATGTATATCACATCTATTGTTTAACCATAAGAACCAAGGTAGCAAAC]
consensusID : consensus_12260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1418 fasta sequence
[ACCTCCAAGCCTCTTGCAAATATTACAAATTATACGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGAATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCCTGCCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTCACAAAGATGACGATTCCTTGCAGCTGCAGTTGCACTGCATTTACTCTTTGGTTTCTTAAACTCCAACATCAGATCACAGTGAAGTGCTCCACATAGATCAGCCAAGCATCTTCCTTGACTATTATCCACAAGATTATTGTGCCGATTGTGAAAATGCTGATCAAGGAACTTCTCTGCTCGGAAGGCTTTCTTGCAGAAACCACAGCGCCATTCATTTATATCAAAGTGAATCTTATGCTGCTCCTGTTCCCGAAACATGTCATTACCAGGATGAAGTCTACATTTGCTTGGGAGTTCATATTTCTCTTTTTCCACAAAGGGCATCAAATACTCATCAATAGCTTTCCAAGCTGCACGGCTTCTTTCCCTTGAGCAATGCACTTGATTTGTGTGTTCATGTGACATAAGAAGAGTTCTGGATCCAGCAGCTTCATGAAATTCCTGGTGTGATGCCGCCGCAACAGCTAAAAGGCAGGAAGCGAAGAGGACGAGGTAGGCGGCGGAGCGAGAGCGACCACCCTCCCGCCTCGGCATCCTCCAAGCTTCTACAACCTTCTGGAGAATAATCGGAGGGGACCTCAGGTACTTGTTCTCATCCGAGCTATCTTGGATGGATCTCCCGCTCCACCCCACCCCAAGTCCAGTGCAGCAGAGGGGAGTAGGGGACTGTCTGGAGAGGAAGAGAGGGAGGGGAGCTGCGGGCTTCGATTCGAAGCGGCGGAGGCAGCCAGGTCAGGCGAGCGTGCTCCGGCGGGAGGATCGCCGGCGGCCGGCGGCGCGAGCGAGAGAGGCG]
[-] EMBL AK069593 [ACCTCCAAGCCTCTTGCAAATATTACAAATTATATGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGAATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCCTGCCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTCACAAAGATGACGATTCCTTGCAGCTGCAGTTGCACTGCATTTACTCTTTGGTTTCTTAAACTCCAACATCAGATCACAGTGAAGTGCTCCACATAGATCAGCCAAGCATCTTCCTTGACTATTATCCACAAGATTATTGTGCCGATTGTGAAAATGCTGATCAAGGAACTTCTCTGCTCGGAAGGCTTTCTTGCAGAAACCACAGCGCCATTCATTTATATCAAAGTGAATCTTATGCTGCTCCTGTTCCCGAAACATGTCATTACCAGGATGAAGTCTACATTTGCTTGGGAGTTCATATTTCTCTTTTTCCACAAAGGGCATCAAATACTCATCAATAGCTTTCCAAGCTGCACGGCTTCTTTCCCTTGAGCAATGCACTTGATTTGTGTGTTCATGTGACATAAGAAGAGTTCTGGATCCAGCAGCTTCATGAAATTCCTGGTGTGATGCCGCCGCAACAGCTAAAAGGCAGGAAGCGAAGAGGACGAGGTAGGCGGCGGAGCGAGAGCGACCACCCTCCCGCCTCGGCATCCTCCAAGCTTCTACAACCTTCTGGAGAATAATCGGAGGGGACCTCAGGTACTTGTTCTCATCCGAGCTATCTTGGATGGATCTCCCGCTCCACCCCACCCCAAGTCCAGTGCAGCAGAGGGGAGTAGGGGACTGTCTGGAGAGGAAGAGAGGGAGGGGAGCTGCGGGCTTCGATTCGAAGCGGCGGAGGCAGCCAGGTCAGGCGAGCGTGCTCCGGCGGGAGGATCGCCGGCGGCCGGCGGCGCGAGCGAGAGAGGCG]
[+] EMBL CB650776 [ CCTCCAAGCCTCTTGCAAATATTACAAATTATACGTGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGAATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCCTGCCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTCACAAAGATGACGATTCCTTGCAGCTGCAGTTGCACTGCATTTACTCTTTGGTTTCTTAAACTCCAACATCAGATCACAGTGAAGTGCTCCACATAGATCAGCCAAGCATCTTCCTTGACTATTATCCACAAGATTATTGTGCCGATTGTGAAAATGCTGATCAAGGAACT ]
[+] EMBL CB650812 [ CCTCCAAGCCTCTTGCAAATATTACAAATTATACGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAAAAGCAGGGCATGGAATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAGCCAGGTAGAATCTGTTTGTTTGTTTCCTGCCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTCACAAAGATGACGATTCCTTGCAGCTGCAGTTGCACTGCATTTACTCTTTGGTTTCTTAAACTCCAACATCAGATCACAGTGAAGTGCTCCACATAGATCAGCCAAGCATCTTCCTTGACTATTATCCACAAGATTATTGTGCCGATTGTGAAAATGCTGATCAAGGAAC ]
consensusID : consensus_12260#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 857 fasta sequence
[CGCCTCTCTCGCTCGCGCCGCCGCGCCGCCGGCGATCCTCCCGCCGGAGCACGCTCGCCTGACCTGGCTGCCTCCGCCGCTTCGAATCGAAGCCCGCAGCTCCCCCTCCCTCTCTTCCTCTCCAGACAGTCCCCTACTCCCCTCTGCTGCACTGGACTTGGGGTGGGGTGGAGCGGGAGATCCATCCAAGATAGCTCGGAGTGAGTGATTTCCCCTTTTTTCTGAAGGTTGTAGAAGCTTGGAGGATGCCGAGGCGGGA-GGGTGGTCGCTCTCGCTCCGCCGCCTACCTCGTCCTCTTCGCTTCCTGCCTTTTAGCTGTTGCGGCGGCATCACACCAGGAATTTCATGAAGCTGCTGGATCCAGAACTCTTCTTATGTCACATGAACACACAAATCAAGTGCATTGCTCAAGGGAAAGAAGCCGTGCAGCTTGGAAAGCTATTGATGAGTATTTGATGCCCTTTGTGGAAAAAGAGAAATATGAACTCCCAAGCAAATGTAGACTTCATCCTGGTAATGACATGTTTCGGGAACAGGAGCAGCATAAGATTCACTTTGATATAAATGAATGGCGCTGTGGTTTCTGCAAGAAAGCCTTCCGAGCAGAGAAGGTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATACTCAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCACTGTGATCTGATGTTGGAGTTTAACACACCAAAGAGTAAATGCAGTGCAACTGCAGCTGCAAGGAATCGTCATCTTTGTGAGAGCCTAGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGACTTCATGAATTTCTCTTGCGCCAA]
[+] EMBL CF280475 [CGCCTCTCTCGCTCGCGCCGCCGCGCCGCCGGCGATCCTCCCGCCGGAGCACGCTCGCCTGACCTGGCTGCCTCCGCCGCTTCGAATCGAAGCCCGCAGCTCCCCCTCCCTCTCTTCCTCTCCAGACAGTCCCCTACTCCCCTCTGCTGCACTTTACTTGGGGTGGGGTGGAGCGGGAGATCCATCCAAGATAGCTTTTATTGAGTGATTTCCCCTTTTTTCTGAAGGTTGTAGAAGCTTGGAGGATGCCGAGGCGGGAGGGGTGGTCGCTCTCGCTCCGCCGCCTACCTCGTCCTCTTCGCTTCCTGCCTTTTAGCTGTTGCGGCGGCATCACACCAGGAATTTCATGAAGCTGCTGGATCCAGAACTCTTCTTATGTCACATGAACACACAAATCAAGTGCATTGCTCAAGGGAAAGAAGCCGTGCAGCTTGGAAAGCTATTGATGAGTATTTGATGCCCTTTGTGGAAAAAGAGAAATATGAACTCCCAAGCAAATGTAGACTTCATCCTGGTAATGACATGTTTCGGGAACAGGAGCAGCATAAGATTCACTTTGATATAAATGAATGGCGCTGT ]
[+] EMBL CB650811 [ GACCTGGCTGCCTCCGCCGCTTCGAATCGAAGCCCGCAGCTCCCCCTCCCTCTCTTCCTCTCCAAACAGTCCCCTACTCCCCTCTGCTGCACTGGACTTGGGGTGGGGTGGAGCGGGAGATCCATCCAAGATAGCTCGGAGTGAGTGATTTCCCCTTTTTTCTGAAGGTTGTAGAAGCTTGGAGGATGCCGAGGCGGGA GGGTGGTCTCTCTCACTCCGCCGCCTACCTCGTCCTCTTCGCTTCCTGCCTTTTATCTGTTGCGGCGGCATCACACCAGGAATTTCATGAAGCTGCTGGATCCAGAACTCTTCTTATGTCACATGAACACACAAATCAAGTGCATTGCTCAAGGGAAAGAAGCCGTGCAGCTTGGAAAGCTATTGATGAGTATTTGATGCCCTTTGTGGAAAAAGAGAAATATGAACTCCCAAGCAAATGTAGACTTCATCCTGGTAATGACATGTTTCGGGAACAGGAGCAGCATAAGATTCACTTTGATATAAATGAATGGCGCTGTGGTTTCTGCAAGAAAGCCTTCCGAGCAGAGAAGGTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATACTCAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCACTGTGATCTGATGTTGGAGTTTAACACACCAAAGAGTAAATGCAGTGCAACTGCAGCTGCAAGGAATCGTCATCTTTGTGAGAGCCTAGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGACTTCATGAATTTCTCTTGCGCCAA]
[+] EMBL CB650775 [ GACCTGGCCGTCTCCGCCGCTTCGAATCGAAGCCCGCAGCTCCCCCTCCCTCTCTTCCTCTCCAGACAGTCCCCTACTCCCCTCTGCTGCACTGGACTTGGGGTGGGGTGGAGCGGGAGATCCATCCAAGATAGCTCGGAGTGAGTGATTTCCCCTTTTTTCTGAAGGTTGTAGAAGCTTGGAGGATGCCGAGGCGGGA GGGTGGTCGCTCTCGCTCCGCCGCCTACCTCGTCCTCTTCGCTTCCTGCCTTTTAGCTGTTGCGGCGGCATCACACCAGGAATTTCATGAAGCTGCTGGATCCAGAACTCTTCTTATGTCACATGAACACACAAATCAAGTGCATTGCTCAAGGGAAAGAAGCCGTGCAGCTTGGAAAGCTATTGATGAGTATTTGATGCCCTTTGTGGAAAAAGAGAAATATGAACTCCCAAGCAAATGTAGACTTCATCCTGGTAATGACATGTTTCGGGAACAGGAGCAGCATAAGATTCACTTTGATATAAATGAATGGCGCTGTGGTTTCTGCAAGAAAGCCTTCCGAGCAGAGAAGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATAGTCAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCACTGTGATCTGATGTTGGAGTTTAAGAAACCAAAGAGTAAATGCAGTGCAACTGCAGCTGCAAGGAATCGTCATCTTTGTGAGAGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCA ]
consensusID : consensus_12260#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence
[TTTTTTTGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGACATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAG]
[+] EMBL CF280474 [TTTTTTTGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGCCTACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGATTGTCTGTAAACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAAGACTCCAGCTTGGGCAAGACATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACACGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATGGCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAATTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAGGCACAGAGAG]
consensusID : consensus_12260#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence
[CAGAACTCTTCTTATGTCACATGAACACACAAATAAGTGCATAGCTCAAGGGAAAAGAGGCGGTCAGCTTGGAAAACTATTAGGTATTTGATCCCCTTTGTGGAAAAAGAGAAATATGAACTCCCAAGCAAATGTAGACTTATCCTGGTAATGACATGGTTTGGGAAACCGGAGCAGCATAACATTCACTTTGATATAAATGAATGGCGCTGTGGGTTTCTGTCAAG]
[+] EMBL D42188 [CAGAACTCTTCTTATGTCACATGAACACACAAATAAGTGCATAGCTCAAGGGAAAAGAGGCGGTCAGCTTGGAAAACTATTAGGTATTTGATCCCCTTTGTGGAAAAAGAGAAATATGAACTCCCAAGCAAATGTAGACTTATCCTGGTAATGACATGGTTTGGGAAACCGGAGCAGCATAACATTCACTTTGATATAAATGAATGGCGCTGTGGGTTTCTGTCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12260#1 -----------------------------------ACCTCCAAGCCTCTTGCAAATATTA 25
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 TCTTTTTTTTTACGAATACCAAAATAATGACAATTACCTCCCAGCCTCTTGCAAATATTA 60
consensus_12260#2 ----------------------------------------CGCCTCTCTCGCTCGCGCCG 20
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 CAAATTATACGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGC 85
consensus_12260#3 ---TTTTTTTGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGC 57
consensus_12260#0 CAAATTATATGGGGATGTTTCTATTCCATTAATCTAAGCCCATAGGATTCAAATTAGAGC 120
consensus_12260#2 CCGCGCCGCCGGCGATCCTCCCGCCGGAGCACGCTCGCCTGACCTGGCTGCCTCCGCCGC 80
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 CT---ACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGAT 142
consensus_12260#3 CT---ACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGAT 114
consensus_12260#0 CT---ACTAAATATTGGATACACATTTTCATTCTTCAATGTACATATAGTCTCATGAGAT 177
consensus_12260#2 TTCGAATCGAAGCCCGCAGCTCCCCCTCCCTCTCTTCCTCTCCAGACAGTCCCCTACTCC 140
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 TGTCTGTA--AACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAA 200
consensus_12260#3 TGTCTGTA--AACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAA 172
consensus_12260#0 TGTCTGTA--AACGGTCATGTAAACCCACATTTCAAGGGATGAACTACAGAGGTCAACAA 235
consensus_12260#2 CCTCTGCTGCACTGGACTTGGGGTGGGGTGGAGCGGGAGATCCATCCAAGATAGCTCGGA 200
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 GACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACA 260
consensus_12260#3 GACTCCAGCTTGGGCAAGACATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACA 232
consensus_12260#0 GACTCCAGCTTGGGCAAGGCATCGAAAAATTATCTTGCTTGACCTCACATAAAAAGCACA 295
consensus_12260#2 GTGAGTGATTTCCCCTTTTTTCTGAAGGTTGTAGAAGCTTGGAGGATGCCGAGGCGGGAG 260
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 CGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATG 320
consensus_12260#3 CGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATG 292
consensus_12260#0 CGTTTGCTTCTTGACGATTGCATCTGCATGAGGGGCTGCATAGGGAAGAAGCAGGGCATG 355
consensus_12260#2 GGTGGTCGCTCTCGCTCCGCCGCCTACCTCGTCCTCTTCGCTTCCTGCCTTTTAGCTGTT 320
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 GA--------------ATTAGGTACCTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAA 366
consensus_12260#3 G------------------------CTAAGATGGTTTTTTCTTTTGGACAACTTTCGAAA 328
consensus_12260#0 GCTGAAAATAGGAAAAGTTAGTCCACACAGATTTTTTTCCCCTCTGAATAATATGCTCAT 415
consensus_12260#2 GCGGCG---GCATCACACCAGGAATTTCATGAAGCTGCTGGATCCAGA-ACTCTTCTTAT 376
consensus_12260#4 --------------------------------------------CAGA-ACTCTTCTTAT 15
* * * * *
consensus_12260#1 TTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGAT 426
consensus_12260#3 TTCGTCTTAAATTTTGACCGCCTTTCTTCATTTCCCTCTGGTGCAAGAATACTATGAGAT 388
consensus_12260#0 GTGTTAGGAAAACTTGAGAAAGAGCATGAGCATCTTGACACAAAAAAAAATAGAGAAGAT 475
consensus_12260#2 GTCACATGAACACACAA-----ATCAAGTGCATTGCTCAAGGGAAAGAAGCCGTGCAGCT 431
consensus_12260#4 GTCACATGAACACACAA-----AT-AAGTGCATAGCTCAAGGGAAAAGAGGCGGTCAGCT 69
* ** * * ** * ** *
consensus_12260#1 AGAACAGTGGCAA--AAGTACTA-TTGTTA--AGGCACAGAGAGCCAGGTAGAATCTGTT 481
consensus_12260#3 AGAACAGTGGCAA--AAGTACTA-TTGTTA--AGGCACAGAGAG---------------- 427
consensus_12260#0 ATAATAGCACCAGGTAGATACTAGTTCCTATCATGCGCAAAAATGTGAATAAATATTTTA 535
consensus_12260#2 TGGAAAGCTATTGATGAGTATTTGATGCCCT-TTGTGGAAAAAGAGAAATATGAACTCCC 490
consensus_12260#4 TGGAAAACTATTA---GGTATTTGATCCCCT-TTGTGGAAAAAGAGAAATATGAACTCCC 125
* * ** * * * * * *
consensus_12260#1 TGTTTGTTTCCTG-------CCACCTTTGGGGAAAGGTTTAGAGCCATTCTTGCATGTGT 534
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 TCACGCTTTACTGTGGAGGGCAACTTACAATTAGGTACCTAAGATGGTTTTTTCTTTTGG 595
consensus_12260#2 AAGCAAATGTAGACTTCATCCTGGTAATGACATGTTTCGGGAA-CAGGAGCAGCATA-AG 548
consensus_12260#4 AAGCAAATGTAGACTT-ATCCTGGTAATGACATGGTTTGGGAAACCGGAGCAGCATA-AC 183
consensus_12260#1 GGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGGCTGGCAGATTGCCCTTGAT 594
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 ACAACTTTCGAAATTCGTCTTAAA-----TTTTGACCGCCTTTCTTCATTTCCCTCTGGT 650
consensus_12260#2 ATTCACTTTGATATAAATGAATGG-----CGCTGTGG-TTTCTGCAAGAAAGCCTTCCGA 602
consensus_12260#4 ATTCACTTTGATATAAATGAATGG-----CGCTGTGGGTTTCTGTCAAG----------- 227
consensus_12260#1 TAATAGGAAAGCAACTATCTGCAAGGCTCTCACAAAGATGACGATTCCTTGCAGCTGCAG 654
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 --GCAAGAATACTATGAGATAGAACAGTGGCAAAAGTACTATTGTTAAG-GCACAGAGAG 707
consensus_12260#2 GCAGAGAAGGTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATACT 662
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 TTGCACTGCATTTACTCTTTGGTTTCTTAAACTCCAACATCAGATCACAGTGAAGTGCTC 714
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 CCAGGTAGAATCTGTTTGTTTGTTTCT---GCACAAAAGGAAAAGTACAAAGATAAGATT 764
consensus_12260#2 CAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCACTGTGATCTGATGTTGGAGTTT 722
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 CACATAGATCAGCCAAGCATCTTCCTTGACTATTATCCACAAGATTATTGTGCCGATTGT 774
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 T-CAGATACTTTTTA-----TTCCTTTAGCTAGTAAAAGGAGTATAGTTACACAATGAGA 818
consensus_12260#2 A--ACACACCAAAGAGTAAATGCAGTGCAACTGCAGCTGCAAGGAATCGTCATCTTTGTG 780
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 GAAAATGCTGATCAAGGAACT---TCTCTGCTCGGAAGGCTTTCTTGCAGAAACCACAGC 831
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 AATATCCAGGACCTTGGACCTGGATAAAGAAATAAAAGAGTTCTGTCCAAGTGCTATAAT 878
consensus_12260#2 AGAGCCTAGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGACTTCATG 840
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 GCCATTCATTTAT--ATCAAAGTGAATCTTATGCTGCTCCTGTTCCCGAAACATGTCATT 889
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 GATTATTTTTCATTGATCACGCATTATCTGTTCAAGTGTGAACTACAAGGGCATACATTT 938
consensus_12260#2 AATTTCTCTTGCGCCAA------------------------------------------- 857
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 ACCAGGATGAAGTCTACATTTGCTTGGGAGTTCATATTTCTCTTTTTCCACAAAGGGCAT 949
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 GGCATGTTTAAAGTGTAAATGCTATATGAAAGTATGATAACCTTAAACTGCAATACGCCA 998
consensus_12260#2 ------------------------------------------------------------
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 CAAATACTCATCAATAGCTTTCCAAGCTGCACGGCTTCTTTCCCTTGAGCAATGCACTTG 1009
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 CAAAAATTTTTTACAGCATACTCCAATCAAAGTTGATATTACACAAAATAAAAATATTA- 1057
consensus_12260#2 ------------------------------------------------------------
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 ATTTGTGTGTTCATGTGACATAAGAAGAGTTCTGGATCCAGCAGCTTCATGAAATTCCTG 1069
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 --TAAAGCTTCCACAGTCCAGAACAAGAGATGAAAAAACTGTTAACTTATTCCAAATGTT 1115
consensus_12260#2 ------------------------------------------------------------
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 GTGTGATG-CCGCCGCAACAGCTAAAAGGCAGGAAGCGAAGAGGACGAGGTAGGCGGCGG 1128
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 ATTTGCTGATTTTTATTGGAATCAGATCCTGCTTAAAATTCATGTTTTCATATGTAGCTC 1175
consensus_12260#2 ------------------------------------------------------------
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 AGCGAGAGCGACCACCCTCCCGCCTCGGCATCCTCCAAGCTTCTACAACCTTCTGGAGAA 1188
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 AATAATGCAGCAAAAAGTTCAGAATCCTTTTTGTTTTGTGAGGAGAAACCCATAACTGAA 1235
consensus_12260#2 ------------------------------------------------------------
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 TAATCGGAGGGGACCTCAGGTACTTGTTCTC--ATCCGAGCTATCTTGGATGGATCTCCC 1246
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 TCAATCAAAGGTTTCCAAGTTAGGAATTCTCTCACCCTGCCACCTTTGGGGAAAGGTTTA 1295
consensus_12260#2 ------------------------------------------------------------
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 GCTCCACCCCACCCCAAGTCCAGTGCAGCAGAGGGGAGTAGGGGACTGTCTGGAGAGGAA 1306
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 GAGCCATTCTTGCATGTGTGGGCATCACAGAATTGGCGCAAGAGAAATTCATGAAGACGG 1355
consensus_12260#2 ------------------------------------------------------------
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 GAGAGGGAGGGGAGCTGCGGGCTTCGATTCGAAGCGGCGGAGGCAGCCAGGTCAGGCGAG 1366
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 CTGGCAGATTGCCCTTGATTAATAGGAAAGCAACTATCTGCAAGGCTCTATTAGCAGAAG 1415
consensus_12260#2 ------------------------------------------------------------
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 CGTGCTCCGGCGGGAGGATCGCCGGCGGCCGGCGGCGCGAGCGAGAGAGGCG-------- 1418
consensus_12260#3 ------------------------------------------------------------
consensus_12260#0 CAAAACTGAGTTAGATAATTTCCATCAGTAGGCCA-GAAAATGCTCAATGTATATCACAT 1474
consensus_12260#2 ------------------------------------------------------------
consensus_12260#4 ------------------------------------------------------------
consensus_12260#1 ----------------------------------
consensus_12260#3 ----------------------------------
consensus_12260#0 CTATTGTTTAACCATAAGAACCAAGGTAGCAAAC 1508
consensus_12260#2 ----------------------------------
consensus_12260#4 ----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||