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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1463 fasta sequence
[CGCTGCGAAGCCATCTTCTTCTCGGTCTCCACGCGCTTTCACCTCCGTATTTTACTCGCGCCCTTCTCTCTCTCCTCGACCTCATTCGCCTCGCCTCGCGTCTCGTCTCGTTCGCCCCTCGCCACCACGCAACACGCCATGGGCGCGGCCGACGACGCCAACCACCGCCACGAGGAGGCCAGCCCCCTCCTGCCACCGGGCGGCGGCGGCGGCGGCGGCAAGAAGCTCCACCAGTCTCCGCCTCCATCGCCTCCGGAGGCAGCCAAGTGC-TGCGCCGATGGAGTCCCCGTCGTTATGGGCGAGCCGCTCGGGGCACCCGCACCGCCGCGGGAGAGC-TGGAACTCGGGGGTGCTCTCCTGCCTCGGCCGCAACGACGAGTTCTGCAGCAGCGACGTCGAAGTGTGTCTTCTTGGAAGCATAGCACCATGTGTGCTGTATGGTAGTAATGTTGAGAGGTTTGCAGCCAGACCAGGAACTTTTGCAAACAGCT-GCTTGCCTTACACTGGCCTCTATAT-GCTTGGGAATGCTCTCTTCGGGTGGAACTGCATAGCCCCA-TGGTTCTCTCATCACACTCGTACAGCTATTCG-TCGACGATACA-ATCTTGAGGGTAGC-TTTGAGGCTTTCACTAAGCA-ATGTGGGTGCTGCCATGGCCTTGTTGAGGATGAGGGGAACCGTGAGCACCTGGAGGTTGCCTGCGACCTTGCAACTCACTACTTCTGTCACCC-TTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAACGGGCGATCTGTCTTGGTCATGACGCCACCAAAGGAGCAGACTATGGGTCGTGGCATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAATGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACAATGGAAACTCCAGCCTGTTTCTCTGAATTGTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTATCACGTTTGTGTTGGCAATCCACTTTTAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTGGGCTTACCTAACCTTATCTTAAACAAAAAGGGAAAATTCCGGGCCCTAAAATAAAATCCCCCTTATAGGAAGTCTTTTAAAAATCAATGGCCCGTGTTTTAAAAACTTGGAAATGGAAAAAACCTTGGCTTACCCAAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCAATTTGGCAAAAAACAAAAAAGGCCCCAACAAATCCCCTTTCCAAAAATTTGCCCACCTTATACTACCGGAATTTAAAGGTTAACCCCTAA]
[+] EMBL AK072658 [CGCTGCGAAGCCATCTTCTTCTCGGTCTCCACGCGCTTTCACCTCCGTATTTTACTCGCGCCCTTCTCTCTCTCCTCGACCTCATTCGCCTCGCCTCGCGTCTCGTCTCGTTCGCCCCTCGCCACCACGCAACACGCCATGGGCGCGGCCGACGACGCCAACCACCGCCACGAGGAGGCCAGCCCCCTCCTGCCACCGGGCGGCGGCGGCGGCGGCGGCAAGAAGCTCCACCAGTCTCCGCCTCCATCGCCTCCGGAGGCAGCCAAGTGC TGCGCCGATGGAGTCCCCGTCGTTATGGGCGAGCCGCTCGGGGCACCCGCACCGCCGCGGGAGAGC TGGAACTCGGGGGTGCTCTCCTGCCTCGGCCGCAACGACGAGTTCTGCAGCAGCGACGTCGAAGTGTGTCTTCTTGGAAGCATAGCACCATGTGTGCTGTATGGTAGTAATGTTGAGAGGTTTGCAGCCAGACCAGGAACTTTTGCAAACAGCT GCTTGCCTTACACTGGCCTCTATAT GCTTGGGAATGCTCTCTTCGGGTGGAACTGCATAGCCCCA TGGTTCTCTCATCACACTCGTACAGCTATTCG TCGACGATACA ATCTTGAGGGTAGC TTTGAGGCTTTCACTAAGCA ATGTGGGTGCTGCCATGGCCTTGTTGAGGATGAGGGGAACCGTGAGCACCTGGAGGTTGCCTGCGACCTTGCAACTCACTACTTCTGTCACCC TTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAACGGGCGATCTGTCTTGGTCATGACGCCACCAAAGGAGCAGACTATGGGTCGTGGCATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAATGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACAATGGAAACTCCAGCCTGTTTCTCTGAATTGTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTATCACGTTTGTGTTGGCAATCCACTTTT ]
[+] EMBL AU075439 [ TTCTCTCTCTCCTCGACCTCATTCGCCTCGCCTCGCGTCTCGTCTCGTTCGCCCCTCGCCACCACGCAACACGCCATGGG GCGGCCGACGACGCCAACCACCGCCACGAGGAGGCCAGCCCCCTCCTGCCACCGGGCGGCGGCGGCGGCGGCGGCAAGAAGCTCCACCAGTCTCCGCCTCCATCGCCTCCGGAGGCAGCCAAGTGC TGCGCCGATGGAGTCCCCGTCGTTATGGGCGAGCCGCTCGGGGCACCCGCACCGCCGCGGGAGAGC TGGAACTCGGGGGTGCTCTCCTGCCTCGGCCGCAACGACGAGTTCTGCAGCAGCGACGTCGAAGTGTGTCTTCTTGGAAGCATAGCACCATGTGTGCTGTATGGTAGTAATGTTGAGAGGTTTGCAGCCAGACCAGGAACTTTTGCAAACAGCTGGCTTGCCTTACACTGGCNTCTATATGGCTTGGGA ]
[+] EMBL AU095168 [ TTCTCTCTCTCCTCGACCTCATTCGCCTCGCCTCGCGTCTCGTCTCGTTCGCCCCTCGCCACCACGCAACACGCCATGGGCGCGGCCGACGACGCCAACCACCGCCACGAGGAGGCCAGCCCCCTCCTGCCACCGGGCGGCGGCGGCGGCGGCGGCAAGAAGCTCCACCAGTCTCCGCCTCCATCGCCTCCGGAGGCAGCCAAGTNCTTGCGCCGATGGAGTCCCCGTCGTTATNGGCGAGCCGCTCGGGGCA CCGCACNGCCGCGGGAGAGCTTGGAATTCGGGGGTGCTCTTCTTGCTCGGCCGCAA ]
[+] EMBL AU181900 [ CTCTCTCTCCTCGACCTCATTCGCCTCGCCTCGCGTCTCGTCTCGTTCGCCCCTCGCCACCACGCAACACGCCATGGGCGCGGCCGACGACGCCAACCACCGCCACGAGGAGGCCAGCCCCCTCCTGCCACCGGGCGGCGGCGGCGGCGGCGGCAAGAAGCTCCACCAGTCTCCGCCTCCATCGCCTCCGGAGGCAGCCAAGTGC TGCGCCGATGGAGTCCCCGTCGTTATGGGCGAGCCGCTCGGGGCACCCGCACCGCCGCGGGAGAGC TGGAACTCGGGGGTGCTCTCCTGCCTCGGCCGCAACGACGAGTTCTGCAGCAGCGACGTCGAAGTGTGTCTTCTTGGAAGCATAGCACCATGTGTGCTGTATGGTAGTAATGTTGAGAGGTTTGCAGCCAGACCAGGAACTTTTGCAAACAGCT GCTTGCCTTAC ]
[+] EMBL BI812585 [ aATAGCCCCACTGGTTCTCTCATCACACTCGTACAGCGATTCGCTCGACGATACACATCTTGAGGGTAGCTTTTGAGGCTTTCACTAAGCACATGTGGGTGCT CCATGGCCTTGTTGAGGATGAGGGGAACCGTGAGCACCTGGAGGTTGCCTGCGACCTTGCAACTCACTACTTCTGTCACCC TTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAACGGGCGATCTGTCTTGGTCATGACGCCACC AAGGAGCAGACTATGGGTCGTGGCATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAATGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACCATGGAAACTCCAGCCTGTTTCTCTGAAaaaaa ]
[+] EMBL AU031065 [ AGGGGAACCGTGAGCACCTGGAGNTTGCCTGCGACTTTNCAACTCACTACTTCTGTCACCCTTTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAACGGGCGATCTGTCTTGGTCATGACGCCACCAAAGGAGCAGACTATGGGTCGTGGCATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAATGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACAATGGAAACTCCAGCCTGTTTCTCTGAATTGTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTAaaaa ]
[+] EMBL AU181901 [ TGCGACCTTGCAACTCACTACTTCTGTCACCC TTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAACGGGCGATCTGTCTTGGTCATGACGCCACCAAAGGAGCAGACTATGGGTCGTGGCATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAATGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACAATGGAAACTCCAGCCTGTTTCTCTGAATTGTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTATCACGTTTGTGTTGGCAATCCACTTTTAAACTTAAAAAA ]
[+] EMBL AU030912 [ nGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAACGGGCGATCTGTCTTGGTCATGACGCCACCAAAGGNGCAGACTATGGGTCGTGGCATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAATGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACAATGGAAACTCCAGCCTGTTTCTCTGAATTGTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTNATNCTGTAaaaa ]
[+] EMBL CF318870 [ GCCTGTTTCTCTGAATTGTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTATCACGTTTGTGTTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTGGGCTTACCTAACCTTATCTTAAACAAAAAGGGAAAATTCCGGGCCCTAAAATAAAATCCCCCTTATAGGAAGTCTTTTAAAAATCAATGGCCCGTGTTTTAAAAACTTGGAAATGGAAAAAACCTTGGCTTACCCAAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCAATTTGGCAAAAAACAAAAAAGGCCCCAACAAATCCCCTTTCCAAAAATTTGCCCACCTTATACTACCGGAATTTAAAGGTTAACCCCTAA]
consensusID : consensus_12261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence
[GTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACCATGGAAACTCCAGCCTGTTTCTCTGAATTCTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTATCACGTTTGTGTTGGCAATCCACTTTTAAACTTATCGATGTGAAGCAGATGTGTCAATGGGCACCCTTGCGGCCTTGCCTATTTGAAACTGCCACTCATGCTGTTTATAAATCTGCTGGAAGTTGTGAAA]
[+] EMBL BI806022 [GTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGATATGGGATCATGATGGACCATGGAAACTCCAGCCTGTTTCTCTGAATTCTGTTGATCGTCTTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTAATACTGTATCACGTTTGTGTTGGCAATCCACTTTTAAACTTATCGATGTGAAGCAGATGTGTCAATGGGCACCCTTGCGGCCTTGCCTATTTGAAACTGCCACTCATGCTGTTTATAAATCTGCTGGAAGTTGTGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12261#0 CGCTGCGAAGCCATCTTCTTCTCGGTCTCCACGCGCTTTCACCTCCGTATTTTACTCGCG 60
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 CCCTTCTCTCTCTCCTCGACCTCATTCGCCTCGCCTCGCGTCTCGTCTCGTTCGCCCCTC 120
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 GCCACCACGCAACACGCCATGGGCGCGGCCGACGACGCCAACCACCGCCACGAGGAGGCC 180
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 AGCCCCCTCCTGCCACCGGGCGGCGGCGGCGGCGGCGGCAAGAAGCTCCACCAGTCTCCG 240
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 CCTCCATCGCCTCCGGAGGCAGCCAAGTGCTGCGCCGATGGAGTCCCCGTCGTTATGGGC 300
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 GAGCCGCTCGGGGCACCCGCACCGCCGCGGGAGAGCTGGAACTCGGGGGTGCTCTCCTGC 360
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 CTCGGCCGCAACGACGAGTTCTGCAGCAGCGACGTCGAAGTGTGTCTTCTTGGAAGCATA 420
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 GCACCATGTGTGCTGTATGGTAGTAATGTTGAGAGGTTTGCAGCCAGACCAGGAACTTTT 480
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 GCAAACAGCTGCTTGCCTTACACTGGCCTCTATATGCTTGGGAATGCTCTCTTCGGGTGG 540
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 AACTGCATAGCCCCATGGTTCTCTCATCACACTCGTACAGCTATTCGTCGACGATACAAT 600
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 CTTGAGGGTAGCTTTGAGGCTTTCACTAAGCAATGTGGGTGCTGCCATGGCCTTGTTGAG 660
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 GATGAGGGGAACCGTGAGCACCTGGAGGTTGCCTGCGACCTTGCAACTCACTACTTCTGT 720
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 CACCCTTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGC 780
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 TTCAACGGGCGATCTGTCTTGGTCATGACGCCACCAAAGGAGCAGACTATGGGTCGTGGC 840
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 ATGTGAACCGTGCCAAACATCTGCTCTGCTCTATTTGCACTTGAGCTATTATGTGATGAA 900
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 TGTTCTCTACTGCCTTGGTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGA 960
consensus_12261#1 -----------------GTGAAACTCTGTATGTTCGTCGGTAAATATGAGTCTTGTGTGA 43
*******************************************
consensus_12261#0 TATGGGATCATGATGGACAATGGAAACTCCAGCCTGTTTCTCTGAATTGTGTTGATCGTC 1020
consensus_12261#1 TATGGGATCATGATGGACCATGGAAACTCCAGCCTGTTTCTCTGAATTCTGTTGATCGTC 103
****************** ***************************** ***********
consensus_12261#0 TTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTA 1080
consensus_12261#1 TTCGGTCTTTCTGTTCCGTATGGACCGCTTGTGTATTCTGTCATTCTGAATAACATTGTA 163
************************************************************
consensus_12261#0 ATACTGTATCACGTTTGTGTTGGCAATCCACTTTTAAACTTAAAAAAAAAAAAAAAAAAA 1140
consensus_12261#1 ATACTGTATCACGTTTGTGTTGGCAATCCACTTTTAAACTTATCGATGTGAAGCAGATGT 223
****************************************** * ** * *
consensus_12261#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTC 1200
consensus_12261#1 GTCAATGGGCACCCTTGCGGCCTTGCCTATTTGAAACTGCCACTCATG-----CTGTTTA 278
** * * *** * * * * *
consensus_12261#0 TGGGCTTACCTAACCTTATCTTAAACAAAAAGGGAAAATTCCGGGCCCTAAAATAAAATC 1260
consensus_12261#1 TAAATCTGCTGGAAGTTGTGAAA------------------------------------- 301
* * * * ** * *
consensus_12261#0 CCCCTTATAGGAAGTCTTTTAAAAATCAATGGCCCGTGTTTTAAAAACTTGGAAATGGAA 1320
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 AAAACCTTGGCTTACCCAAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCAATTTGGC 1380
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 AAAAAACAAAAAAGGCCCCAACAAATCCCCTTTCCAAAAATTTGCCCACCTTATACTACC 1440
consensus_12261#1 ------------------------------------------------------------
consensus_12261#0 GGAATTTAAAGGTTAACCCCTAA 1463
consensus_12261#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||