These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2309 fasta sequence [CAACAGCCCAGTACTACTAGCACCGAGACGAGACGAGAGAGAGACGGTCGCCCTCCCAGTCCAGTACAGTGACTCACTCTCACTCCAGACTCCTCCCTCTCTCTCTCGTCTCTCTCCTGCCGGCGGCGCCGTGGCGGCGAGCGGCGGAGCACTAGGGGAGGAGGGGGCTCGTGCTCGTCTGTCGCTGGGTGTGTCGGGGGCGCCGCGGATCACTCTGCCTCGAGCTGCGCGCTCGCATTCCGCTCCTTCGATCTGGGTTCATCTGTTCTGAGATGGCTGGCGACATTACGTGTGGATCCTTGCTGCAGAAACTGCAGTTGATATGGGATGAAGTTGGTGAGAGCGACGAGGACCGCGACAAGGTCCTGTACCAGTTAGATCAGGAGTGCCTGGATGTTTACAAGAGGAAAGTTGACCAGGCCACCGACTCTAGGGATCTCCTTATCCAGGCGCTGGATGACTCGAAGATTGAGCTGGCCAGACTTTTATCTGCTCTAGGAGAGAAGGCCATAGCAAGAACTCCTGAGAAGACGTCTGGGACAATCAAGCAACAACTTGCTGCTATAGCGCCAACACTCGAGAAGTTGAACAAGCAGAAAAACGAAAGAGTGCGGGAATTTGTTAATGTTCAGTCACAAATTGATCAAATATGTGGTGAGATTGCTGGCACTACGGAGGTGGGTGAGAAGGTGGCAACGCCACAAGTTAATGAGGATGATTTGACACTTGAGAGGCTTGAAGAATTTCGTTAACAACTACAGGAGCTCGAAAAAGAGAAGAGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTCTGTACTGTCTTAGGGATGGATTTTCTTAGCACAGTGACTGAAGTTCATCCCAGTTTGGATGACTCTATTGGTGACAACTGCAAGAGCATTAGCAATGATACACTGTCAAAACTTGACAAGACTGTAGCCACACTTAATGAAGACAAAAAGTCAAGACTAAGCAAGCTTCAAGAGCTTGCTGGTCAACTCTACGATCTTTGGGATCTCATGGATGCCCCCATGCAAAAAAGGAGCATGTTTGATCATGTCACCTGCAACAGATCAGCCTCTGTAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAGCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAGGAAATAGCTTTCAAGAAGCAAACTGAGTTGGAAGACATCTATGCTGGTGCTCACATGGTAATAGATACAGCTGCTGCCCATGAAAAAATATTGGCGCTGATTGAGGCAGGGAACATAGAACCATCAGAATTGATTGCAGATATGGAAAGCCAGATATCAAAAGCAAAGGAAGAAGCATTGAGTAGAAAAGAAATATTAGACAAAGTTGAAAGATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTGCTGAAAAGGCTCGGATTCTTGTCAACAAGATTCCAGCACTTGTTGAAACTCTGGTGGCAAAGACCAGGGCATGG-GAGGAGAGCCGTGGTCTGTCCTTTATGTATGATGGTGTACCTCTTCTAGCTATGTTGG-ATGAATATGTCATGCTAAGGCAGGAAAGGGAAGAAGATAAGAAAAGAATGAGGGAACAAAAGCGCTACATCGAGCAACAACTGAACACCGACCATGAAGGGCCATTTGGTTCACGTGTGAGCCCTAACAGACCAGTCAGTGCAAAGAAGGTACCTGGTGCAAAATCAAATGGCAGTGCTAATGGCACTCCTCCGAATAGGAGACTTTCGGTCAGCGGTCACCAGAACGGAAGGTCTGGAGGAAAGGATGGCAAGAGGGACTCTGCCAAGACAGCTTCCCCCGGGAATGTAGCAGCTGCTAAGGAAGATGCATCCTCACACATTTCTGGCACCGATCCGGTT-CCGAGCACACCATGATCTTTAACCTTA-TGGTATATTAGATAAAGAGAGGACAGTTTCTGATGTTTCCATTGATTTGTGGCTATATAATGTATTGTGTTTGTAGCGAGGAGTAATTATATAACGTCCATCCTTCAGGCAGGATCTTTTGCTTCTGTGGAGTAAGTGGAGTTCAACTTTTGATTAGTTCCCTCAGCTGTACTATTTCCCCTTCTCATCAGACTCTGTAGTATAGCCTTTGCTGGTATGTATTACTATTCGTTAACCTGTTTGCTACATGTACAAGTTCTTGGAATGCCTTTCCCCTGC------AAAAAAAAAAAAAAA] [+] EMBL AK102553 [CAACAGCCCAGTACTACTAGCACCGAGACGAGACGAGAGAGAGACGGTCGCCCTCCCAGTCCAGTACAGTGACTCACTCTCACTCCAGACTCCTCCCTCTCTCTCTCGTCTCTCTCCTGCCGGCGGCGCCGTGGCGGCGAGCGGCGGAGCACTAGGGGAGGAGGGGGCTCGTGCTCGTCTGTCGCTGGGTGTGTCGGGGGCGCCGCGGATCACTCTGCCTCGAGCTGCGCGCTCGCATTCCGCTCCTTCGATCTGGGTTCATCTGTTCTGAGATGGCTGGCGACATTACGTGTGGATCCTTGCTGCAGAAACTGCAGTTGATATGGGATGAAGTTGGTGAGAGCGACGAGGACCGCGACAAGGTCCTGTACCAGTTAGATCAGGAGTGCCTGGATGTTTACAAGAGGAAAGTTGACCAGGCCACCGACTCTAGGGATCTCCTTATCCAGGCGCTGGATGACTCGAAGATTGAGCTGGCCAGACTTTTATCTGCTCTAGGAGAGAAGGCCATAGCAAGAACTCCTGAGAAGACGTCTGGGACAATCAAGCAACAACTTGCTGCTATAGCGCCAACACTCGAGAAGTTGAACAAGCAGAAAAACGAAAGAGTGCGGGAATTTGTTAATGTTCAGTCACAAATTGATCAAATATGTGGTGAGATTGCTGGCACTACGGAGGTGGGTGAGAAGGTGGCAACGCCACAAGTTAATGAGGATGATTTGACACTTGAGAGGCTTGAAGAATTTCGTTAACAACTACAGGAGCTCGAAAAAGAGAAGAGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTCTGTACTGTCTTAGGGATGGATTTTCTTAGCACAGTGACTGAAGTTCATCCCAGTTTGGATGACTCTATTGGTGACAACTGCAAGAGCATTAGCAATGATACACTGTCAAAACTTGACAAGACTGTAGCCACACTTAATGAAGACAAAAAGTCAAGACTAAGCAAGCTTCAAGAGCTTGCTGGTCAACTCTACGATCTTTGGGATCTCATGGATGCCCCCATGCAAAAAAGGAGCATGTTTGATCATGTCACCTGCAACAGATCAGCCTCTGTAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAGCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAGGAAATAGCTTTCAAGAAGCAAACTGAGTTGGAAGACATCTATGCTGGTGCTCACATGGTAATAGATACAGCTGCTGCCCATGAAAAAATATTGGCGCTGATTGAGGCAGGGAACATAGAACCATCAGAATTGATTGCAGATATGGAAAGCCAGATATCAAAAGCAAAGGAAGAAGCATTGAGTAGAAAAGAAATATTAGACAAAGTTGAAAGATGGATGTCTGCTTGTGAAGAAGTAAGCTGGCTTGAAGATTATAACCGGGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTGCTGAAAAGGCTCGGATTCTTGTCAACAAGATTCCAGCACTTGTTGAAACTCTGGTGGCAAAGACCAGGGCATGG GAGGAGAGCCGTGGTCTGTCCTTTATGTATGATGGTGTACCTCTTCTAGCTATGTTGG ATGAATATGTCATGCTAAGGCAGGAAAGGGAAGAAGATAAGAAAAGAATGAGGGAACAAAAGCGCTACATCGAGCAACAACTGAACACCGACCATGAAGGGCCATTTGGTTCACGTGTGAGCCCTAACAGACCAGTCAGTGCAAAGAAGGTACCTGGTGCAAAATCAAATGGCAGTGCTAATGGCACTCCTCCGAATAGGAGACTTTCGGTCAGCGGTCACCAGAACGGAAGGTCTGGAGGAAAGGATGGCAAGAGGGACTCTGCCAAGACAGCTTCCCCCGGGAATGTAGCAGCTGCTAAGGAAGATGCATCCTCACACATTTCTGGCACCGATCCGGTT CCGAGCACACCATGATCTTTAACCTTA TGGTATATTAGATAAAGAGAGGACAGTTTCTGATGTTTCCATTGATTTGTGGCTATATAATGTATTGTGTTTGTAGCGAGGAGTAATTATATAACGTCCATCTTTCAGGCAGGATCTTTTGCTTCTGTGGAGTAAGTGGAGTTCAACTTTTGATTAGTTCCCTCAGCTGTACTATTTCCCCTTCTCATCAGACTCTGTAGTATAGCCTTTGCTGGTATGTATTACTATTCGTTAACCTGTTTGCTACATGTACAAGTTCTTGGAATGCCTT ] [+] EMBL AK101549 [ ACAGTGACTCACTCTCACTCCAGACTCCTCCCTCTCTCTCTCGTCTCTCTCCTGCCGGCGGCGCCGTGGCGGCGAGCGGCGGAGCACTAGGGGAGGAGGGGGCTAGTGCTCGTCTGTCGCTGGGTGTGTCGGGGGCGCCGCGGATCACTCTGCCTCGAGCTGCGCGCTCGCATTCCGCTCCTTCGATCTGGGTTCATCTGTTCTGAGATGGCTGGCGACATTACGTGTGGATCCTTGCTGCAGAAACTGCAGTTGATATGGGATGAAGTTGGTGAGAGCGACGAGGACCGCGACAAGGTCCTGTACCAGTTAGATCAGGAGTGCCTGGATGTTTACAAGAGGAAAGTTGACCAGGCCACCGACTCTAGGGATCTCCTTATCCAGGCGCTGGATGACTCGAAGATTGAGCTGGCCAGACTTTTATCTGCTCTAGGAGAGAAGGCCATAGCAAGAACTCCTGAGAAGACGTCTGGGACAATCAAGCAACAACTTGCTGCTATAGCGCCAACACTCGAGAAGTTGAACAAGCAGAAAAACGAAAGAGTGCGGGAATTTGTTAATGTTCAGTCACAAATTGATCAAATATGTGGTGAGATTGCTGGCACTACGGAGGTGGGTGAGAAGGTGGCAACGCCACAAGTTAATGAGGATGATTTGACACTTGAGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAGAGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTCTGTACTGTCTTAGGGATGGATTTTCTTAGCACAGTGACTGAAGTTCATCCCAGTTTGGATGACTCTATTGGTGACAACTGCAAGAGCATTAGCAATGATACACTGTCAAAACTTGACAAGACTGTAGCCACACTTAATGAAGACAAAAAGTCAAGACTAAGCAAGCTTCAAGAGCTTGCTGGTCAACTCTACGATCTTTGGGATCTCATGGATGCCCCCATGCAAGAAAGGAGCATGTTTGATCATGTCACCTGCAACAGATCAGCCTCTGTAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAGCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAGGAAATAGCTTTCAAGAAGCAAACTGAGTTGGAAGACATCTATGCTGGTGCTCACATGGTAATAGATACAGCTGCTGCCCATGAAAAAATATTGGCGCTGATTGAGGCAGGGAACATAGAACCATCAGAATTGATTGCAGATATGGAAAGCCAGATATCAAAAGCAAAGGAAGAAGCATTGAGTAGAAAAGAAATATTAGACAAAGTTGAAAGATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTGCTGAAAAGGCTCGGATTCTTGTCAACAAGATTCCAGCACTTGTTGAAACTCTGGTGGCAAAGACCAGGGCATGG GAGGAGAGCCGTGGTCTGTCCTTTATGTATGATGGTGTACCTCTTCTAGCTATGTTGG ATGAATATGTCATGCTAAGGCAGGAAAGGGAAGAAGATAAGAAAAGAATGAGGGAACAAAAGCGCTACATCGAGCAACAACTGAACACCGACCATGAAGGGCCATTTGGTTCACGTGTGAGCCCTAACAGACCAGTCAGTGCAAAGAAGGTACCTGGTGCAAAATCAAATGGCAGTGCTAATGGCACTCCTCCGAATAGGAGACTTTCGGTCAGCGGTCACCAGAACGGAAGGTCTGGAGGAAAGGATGGCAAGAGGGACTCTGCCAAGACAGCTTCCCCCGGGAATGTAGCAGCTGCTAAGGAAGATGCATCCTCACACATTTCTGGCACCGATCCGGTT CCGAGCACACCATGATCTTTAACCTTA TGGTATATTAGATAAAGAGAGGACAGTTTCTGATGTTTCCATTGATTTGTGGCTATATAATGTATTGTGTTTGTAGCGAGGAGTAATTATATAACGTCCATCCTTCAGGCAGGATCTTTTGCTTCTGTGGAGTAAGTGGAGTTCAACTTTTGATTAGTTCCCTCAGCTGTACTATTTCCCCTTCTCATCAGACTCTGTAGTATAGCCTTTGCTGGTATGTATTACTATTCGTTAACCTGTTTGCTACATGTACAAGTTCTTGGAATG ] [+] EMBL C97441 [ GCGCTGATTGAGGCAGGGAACATAGAACCATCAGAATTGATTGCAGATATGGAAAGCCAGATATCAAAAGCAAAGGAAGAAGCATTGAGTAGAAAAGAAATATTAGACAAAGTTGAAAGATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTGCTGAAAAGGCTCGGATTCTTGTGAACAAGATTCCAGCACTTGTTGAAACTCTGGTGGCAAAGACCAGGGCATGGNGAGGAGAGCCGTGGTCTGTNCTTTATGTATGATGGTGTACCTCTTCTAGCTATGTTGGAATGAATATGTCATGC ] [+] EMBL AU063028 [ TTCTAGCTATGTTGG ATGAATATGTCATGCTAAGGCAGGAAAGGGAAGAAGATAAGAAAAGAATGAGGGAACAAAAGCGCTACATCGAGCAACAACTGAACACCGACCATGAAGGGCCATTTGGTTCACGTGTGAGCCCTAACAGACCAGTCAGTGCAAAGAAGGTACCTGGTGCAAAATCAAATGGCAGTGCTAATGGCACTCCTCCGAATAGGAGACTTTCGGTCAGCGGTCACCAGAACGGAAGGTCTGGAGGAAAGGATGGCAAGAGGGACTCTGCCAAGACAGCTTCCCCCGGGAATGTAGCAGCTGCTAAGGAAGATGCATCCTCACACATTTCTNGCACCGATNCGGTTCCCGAGCACACCATGATCTTTAACCTTATTGGTATAT ] [+] EMBL OSAA31795 [ TCGAGCAACAACTGAACACCGACCATGAAGGGCCATTTGGTTCACGTGTGAGCCCTAACAGACCAGTCAGTGCAAAGAAGGTACCTGGTGCAAAATCAAATGGCAGTGCTAATGGCACTCCTCCGAATAGGAGACTTTCGGTCAGCGGTCACCAGAACGGAAGGTCTGGAG ] [+] EMBL BE040480 [ AACACCGACCATGAAGGGCCATTTGGTTCACGTGTGAGCCCTAACAGACCAGTCAGTGCAAAGAAGGTACCTGGTGCAAAATCAAATGGCAGTGCTAATGGCACTCCTCCGAATAGGAGACTTTCGGTTAGCGGTCACCAGAACGGAAGGTCTGGAGGAAAGGATGGCAAGAGGGACTCTGCCAAGACAGCTTCCCCCGGGAATGTAGCAGCTGCTAAGGAAGACGCATCCTCACACATTTCTGGCACTGATCCGGTT CCGAGCACACCATGATCTTTAACCTTA TGGTATATTAGATAAAGAGAGGACATTTTCTGATGTTTCCATTGATTTGTGGCTATATAATGTATTGTGTTTGTAGCGAGGAGTAATTATATAACGTCCATCCTTCAGGCAGGATCTTTTGCTTCTGTGGAGTAAGTGGAGTTCAACTTTTGATTAGTTCCTTCAGCTGTACTATTTCCCCTTCTCATCAGACTCTGTAGTATAGCCTTTGCTGGTATGTATTACTATTCGTTAACCTGTTTGCTACATGTACAAGTTCTTGGAATGCCTTTCCCCTGC AAAAAAAAAAAA ] [+] EMBL AU092620 [ acCAGCTGCTAAGGAAGATGCACCCTCACACATTTCTGGCACCGATCCGGTT CCGAGCACACCATGATCTTTAACCTTA TGGTATATTAGATAAAGAGAGGACAGTTTCTGATGTTTCCATTGATTTGTGGCTATATAATGTATTGTGTTTGTAGCGAGGAGTAATTATATAACGTCCATCCTTCAGGCAGGATCTTTTGCTTCTGTGGAGTAAGTGGAGTTCAACTTTTGATTAGTTCCCTCAGCTGTACTATTTCCCCTTCTCATCAGACTCTGTAGTATAGCCTTTGCTGGTATGTATTACTATTCGTTAACCTGTTTGCTACATGTACAAGTTCTTGGAATGCCTTTCCCCTGCCCTGCTAAAAAAAAAAAAAAA] [-] EMBL OSAA31776 [ TTGTGTTTGTAGCGAGGAGTAATTATATAACGTCCATCCTTCAGGCAGGATCTTTTGCTTCTGTGGAGTAAGTGGAGTTCAACTTTNGATTAGTTCCTTCAGCTGTANTATTTCCCCTTCTCATCAGACTCTGTAGTATAGCCTTTGCTGGTATGTATTACTATTCGTTAACCTGTTTGCTACATGTACAAGTTCTTGGAATGCCTTTCCCC ] consensusID : consensus_12262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1700 fasta sequence [AGCCCAGTACTACTAGCACCGAGACGAGACGAGAGAGAGACGGTCGCCCTCCCAGTCCAGTACAGTGACTCACTCTCACTCCAGACTCCTCCCTCTCTCTCTCGTCTCTCTCCTGCCGGCGGCGCCGTGGCGGCGAGCGGCGGAGCACTAGGGGAGGAGGGGGCTCGTGCTCGTCTGTCGCTGGGTGTGTCGGGGGCGCCGCGGATCACTCTGCCTCGAGCTGCGCGCTCGCATTCCGCTCCTTCGATCTGGGTTCATCTGTTCTGAGATGGCTGGCGACATTACGTGTGGATCCTTGCTGCAGAAACTGCAGTTGATATGGGATGAAGTTGGTGAGAGCGACGAGGACCGCGACAAGGTCCTGTACCAGTTAGATCAGGAGTGCCTGGATGTTTACAAGAGGAAAGTTGACCAGGCCACCGACTCTAGGGATCTCCTTATCCAGGCGCTGGATGACTCGAAGATTGAGCTGGCCAGACTTTTATCTGCTCTAGGAGAGAAGGCCATAGCAAGAACTCCTGAGAAGACGTCTGGGACAATCAAGCAACAACTTGCTGCTATAGCGCCAACACTCGAGAAGTTGAACAAGCAGAAAAACGAAAGAGTGCGGGAATTTGTTAATGTTCAGTCACAAATTGATCAAATATGTGGTGAGATTGCTGGCACTACGGAGGTGGGTGAGAAGGTGGCAACGCCACAAGTTAATGAGGATGATTTGACACTTGAGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAGAGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTCTGTACTGTCTTAGGGATGGATTTTCTTAGCACAGTGACTGAAGTTCATCCCAGTTTGGATGACTCTATTGGTGACAACTGCAAGAGCATTAGCAATGATACACTGTCAAAACTTGACAAGACTGTAGCCACACTTAATGAAGACAAAAAGTCAAGACTAAGCAAGCTTCAAGAGCTTGCTGGTCAACTCTACGATCTTTGGGATCTCATGGATGCCCCCATGCAAGAAAGGAGCATGTTTGATCATGTCACCTGCAACAGATCAGCCTCTGTAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAGCTGAGATAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAGGAAATAGCTTTCAAGAAGCAAACTGAGTTGGAAGACATCTATGCTGGTGCTCACATGGTAATAGATACAGCTGCTGCCCATGAAAAAATATTGGCGCTGATTGAGGCAGGGAACATAGAACCATCAGAATTGATTGCAGATATGGAAAGCCAGATATCAAAAGCAAAGGAAGAAGCATTGAGTAGAAAAGAAATATTAGACAAAGTTGAAAGATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTGCTGAAAAGGCTCGGATTCTTGTCAACAAGATTCCAGCACTTGTTGAAACTCTGGTGGCAAAGACCAGGGCATGGGAGGAGAGCCGTGGTCTGTCCTTTATGTATGATGGTGTACCCCTTCTCATCAGACTCTGTAGTATAGCCTTTGCTGGTATGTATTACTATTCGTTAACCTGTTTGCTACATGTAC] [+] EMBL AK059211 [AGCCCAGTACTACTAGCACCGAGACGAGACGAGAGAGAGACGGTCGCCCTCCCAGTCCAGTACAGTGACTCACTCTCACTCCAGACTCCTCCCTCTCTCTCTCGTCTCTCTCCTGCCGGCGGCGCCGTGGCGGCGAGCGGCGGAGCACTAGGGGAGGAGGGGGCTCGTGCTCGTCTGTCGCTGGGTGTGTCGGGGGCGCCGCGGATCACTCTGCCTCGAGCTGCGCGCTCGCATTCCGCTCCTTCGATCTGGGTTCATCTGTTCTGAGATGGCTGGCGACATTACGTGTGGATCCTTGCTGCAGAAACTGCAGTTGATATGGGATGAAGTTGGTGAGAGCGACGAGGACCGCGACAAGGTCCTGTACCAGTTAGATCAGGAGTGCCTGGATGTTTACAAGAGGAAAGTTGACCAGGCCACCGACTCTAGGGATCTCCTTATCCAGGCGCTGGATGACTCGAAGATTGAGCTGGCCAGACTTTTATCTGCTCTAGGAGAGAAGGCCATAGCAAGAACTCCTGAGAAGACGTCTGGGACAATCAAGCAACAACTTGCTGCTATAGCGCCAACACTCGAGAAGTTGAACAAGCAGAAAAACGAAAGAGTGCGGGAATTTGTTAATGTTCAGTCACAAATTGATCAAATATGTGGTGAGATTGCTGGCACTACGGAGGTGGGTGAGAAGGTGGCAACGCCACAAGTTAATGAGGATGATTTGACACTTGAGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAGAGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTCTGTACTGTCTTAGGGATGGATTTTCTTAGCACAGTGACTGAAGTTCATCCCAGTTTGGATGACTCTATTGGTGACAACTGCAAGAGCATTAGCAATGATACACTGTCAAAACTTGACAAGACTGTAGCCACACTTAATGAAGACAAAAAGTCAAGACTAAGCAAGCTTCAAGAGCTTGCTGGTCAACTCTACGATCTTTGGGATCTCATGGATGCCCCCATGCAAGAAAGGAGCATGTTTGATCATGTCACCTGCAACAGATCAGCCTCTGTAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAGCTGAGATAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAGGAAATAGCTTTCAAGAAGCAAACTGAGTTGGAAGACATCTATGCTGGTGCTCACATGGTAATAGATACAGCTGCTGCCCATGAAAAAATATTGGCGCTGATTGAGGCAGGGAACATAGAACCATCAGAATTGATTGCAGATATGGAAAGCCAGATATCAAAAGCAAAGGAAGAAGCATTGAGTAGAAAAGAAATATTAGACAAAGTTGAAAGATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTGCTGAAAAGGCTCGGATTCTTGTCAACAAGATTCCAGCACTTGTTGAAACTCTGGTGGCAAAGACCAGGGCATGGGAGGAGAGCCGTGGTCTGTCCTTTATGTATGATGGTGTACCCCTTCTCATCAGACTCTGTAGTATAGCCTTTGCTGGTATGTATTACTATTCGTTAACCTGTTTGCTACATGTAC] consensusID : consensus_12262#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [AGCGGTCACCAGAACGGAAGGTCTGGAGGAAAGGATGGCAAGAGGGACTCTGCCAAGACAGCTTCCCCCGGGAATGTAGCAGCTGCTAAGGAAGATGCATCCTCACACATTTCTGGCACCGATCCGGTTCCGAGCACACCATGATCTTTAACCTTATGGTATATTAGATAAAGAGAGGACAGTTTCTGATGTTTCCATTGATTTGTGGCTATATAATGTATTGTGTTTGTAGCGAGGAGTAATTATATAACGTCCATCCTTCAGGCAGGATCTTTTGCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU101245 [AGCGGTCACCAGAACGGAAGGTCTGGAGGAAAGGATGGCAAGAGGGACTCTGCCAAGACAGCTTCCCCCGGGAATGTAGCAGCTGCTAAGGAAGATGCATCCTCACACATTTCTGGCACCGATCCGGTTCCGAGCACACCATGATCTTTAACCTTATGGTATATTAGATAAAGAGAGGACAGTTTCTGATGTTTCCATTGATTTGTGGCTATATAATGTATTGTGTTTGTAGCGAGGAGTAATTATATAACGTCCATCCTTCAGGCAGGATCTTTTGCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12262#0 CAACAGCCCAGTACTACTAGCACCGAGACGAGACGAGAGAGAGACGGTCGCCCTCCCAGT 60 consensus_12262#1 ----AGCCCAGTACTACTAGCACCGAGACGAGACGAGAGAGAGACGGTCGCCCTCCCAGT 56 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 CCAGTACAGTGACTCACTCTCACTCCAGACTCCTCCCTCTCTCTCTCGTCTCTCTCCTGC 120 consensus_12262#1 CCAGTACAGTGACTCACTCTCACTCCAGACTCCTCCCTCTCTCTCTCGTCTCTCTCCTGC 116 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 CGGCGGCGCCGTGGCGGCGAGCGGCGGAGCACTAGGGGAGGAGGGGGCTCGTGCTCGTCT 180 consensus_12262#1 CGGCGGCGCCGTGGCGGCGAGCGGCGGAGCACTAGGGGAGGAGGGGGCTCGTGCTCGTCT 176 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 GTCGCTGGGTGTGTCGGGGGCGCCGCGGATCACTCTGCCTCGAGCTGCGCGCTCGCATTC 240 consensus_12262#1 GTCGCTGGGTGTGTCGGGGGCGCCGCGGATCACTCTGCCTCGAGCTGCGCGCTCGCATTC 236 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 CGCTCCTTCGATCTGGGTTCATCTGTTCTGAGATGGCTGGCGACATTACGTGTGGATCCT 300 consensus_12262#1 CGCTCCTTCGATCTGGGTTCATCTGTTCTGAGATGGCTGGCGACATTACGTGTGGATCCT 296 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 TGCTGCAGAAACTGCAGTTGATATGGGATGAAGTTGGTGAGAGCGACGAGGACCGCGACA 360 consensus_12262#1 TGCTGCAGAAACTGCAGTTGATATGGGATGAAGTTGGTGAGAGCGACGAGGACCGCGACA 356 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 AGGTCCTGTACCAGTTAGATCAGGAGTGCCTGGATGTTTACAAGAGGAAAGTTGACCAGG 420 consensus_12262#1 AGGTCCTGTACCAGTTAGATCAGGAGTGCCTGGATGTTTACAAGAGGAAAGTTGACCAGG 416 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 CCACCGACTCTAGGGATCTCCTTATCCAGGCGCTGGATGACTCGAAGATTGAGCTGGCCA 480 consensus_12262#1 CCACCGACTCTAGGGATCTCCTTATCCAGGCGCTGGATGACTCGAAGATTGAGCTGGCCA 476 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 GACTTTTATCTGCTCTAGGAGAGAAGGCCATAGCAAGAACTCCTGAGAAGACGTCTGGGA 540 consensus_12262#1 GACTTTTATCTGCTCTAGGAGAGAAGGCCATAGCAAGAACTCCTGAGAAGACGTCTGGGA 536 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 CAATCAAGCAACAACTTGCTGCTATAGCGCCAACACTCGAGAAGTTGAACAAGCAGAAAA 600 consensus_12262#1 CAATCAAGCAACAACTTGCTGCTATAGCGCCAACACTCGAGAAGTTGAACAAGCAGAAAA 596 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 ACGAAAGAGTGCGGGAATTTGTTAATGTTCAGTCACAAATTGATCAAATATGTGGTGAGA 660 consensus_12262#1 ACGAAAGAGTGCGGGAATTTGTTAATGTTCAGTCACAAATTGATCAAATATGTGGTGAGA 656 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 TTGCTGGCACTACGGAGGTGGGTGAGAAGGTGGCAACGCCACAAGTTAATGAGGATGATT 720 consensus_12262#1 TTGCTGGCACTACGGAGGTGGGTGAGAAGGTGGCAACGCCACAAGTTAATGAGGATGATT 716 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 TGACACTTGAGAGGCTTGAAGAATTTCGTTAACAACTACAGGAGCTCGAAAAAGAGAAGA 780 consensus_12262#1 TGACACTTGAGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAGA 776 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 GCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTCTGTACTGTCT 840 consensus_12262#1 GCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTCTGTACTGTCT 836 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 TAGGGATGGATTTTCTTAGCACAGTGACTGAAGTTCATCCCAGTTTGGATGACTCTATTG 900 consensus_12262#1 TAGGGATGGATTTTCTTAGCACAGTGACTGAAGTTCATCCCAGTTTGGATGACTCTATTG 896 consensus_12262#2 -------------------------------AGCGGTCACCAGAACGGAAGG-TCTGGAG 28 ** **** *** * *** * consensus_12262#0 GTGACAACTGCAAGAGCATTAGCAATGATACACTGTCAAAACTTGACAAGACTGTAGCCA 960 consensus_12262#1 GTGACAACTGCAAGAGCATTAGCAATGATACACTGTCAAAACTTGACAAGACTGTAGCCA 956 consensus_12262#2 GAAAGGATGGCAAGAGGGACTCTGCCAAGACAGCTTC------CCCCGGGAATGTAGCAG 82 * * * ******* * *** ** * ** ****** consensus_12262#0 CACTTAATGAAGACAAAAAGTCAAGACTAAGCAAGCTTCAAGAGCTTGCTGGTCAACTCT 1020 consensus_12262#1 CACTTAATGAAGACAAAAAGTCAAGACTAAGCAAGCTTCAAGAGCTTGCTGGTCAACTCT 1016 consensus_12262#2 CTGCTAAGGAAGATGCATCCTCAC-ACATTTCTGGCACCGATCCGGTTCCGAGCA-CACC 140 * *** ***** * *** ** * ** * * * * * ** * * consensus_12262#0 ACGATCTTTGGGATCTCATGGATGCCCCCATGCAAAAAAGGAGCATGTTTGATCATGTCA 1080 consensus_12262#1 ACGATCTTTGGGATCTCATGGATGCCCCCATGCAAGAAAGGAGCATGTTTGATCATGTCA 1076 consensus_12262#2 ATGATCTTTA--ACCTTATGG-TATATTAGATAAAGAGAGGACAGTTTCTGAT---GTTT 194 * ******* * ** **** * ** * **** * * **** ** consensus_12262#0 CCTGCAACAGATCAGCCTCTGTAG-ACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGAT 1139 consensus_12262#1 CCTGCAACAGATCAGCCTCTGTAG-ACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGAT 1135 consensus_12262#2 CCATTGATTTGT--GGCTATATAATGTATTGTGTTTGTAGCGAGGAGTAATTATATAACG 252 ** * * * ** * ** * ** ** * * * * * * consensus_12262#0 CTCATTGAGCAAGCTGAGG-TAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGAT 1198 consensus_12262#1 CTCATTGAGCAAGCTGAGA-TAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGAT 1194 consensus_12262#2 TCCATCCTTCAGGCAGGATCTTTTGCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 312 *** ** ** * * * ****** * * * **** * * ** * consensus_12262#0 GAAGGAAATAGCTTTCAAGAAGCAAACTGAGTTGGAAGACATCTATGCTGGTGCTCACAT 1258 consensus_12262#1 GAAGGAAATAGCTTTCAAGAAGCAAACTGAGTTGGAAGACATCTATGCTGGTGCTCACAT 1254 consensus_12262#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------- 343 ** *** * ** ** *** * consensus_12262#0 GGTAATAGATACAGCTGCTGCCCATGAAAAAATATTGGCGCTGATTGAGGCAGGGAACAT 1318 consensus_12262#1 GGTAATAGATACAGCTGCTGCCCATGAAAAAATATTGGCGCTGATTGAGGCAGGGAACAT 1314 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 AGAACCATCAGAATTGATTGCAGATATGGAAAGCCAGATATCAAAAGCAAAGGAAGAAGC 1378 consensus_12262#1 AGAACCATCAGAATTGATTGCAGATATGGAAAGCCAGATATCAAAAGCAAAGGAAGAAGC 1374 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 ATTGAGTAGAAAAGAAATATTAGACAAAGTTGAAAGATGGATGTCTGCTTGTGAAGAAGA 1438 consensus_12262#1 ATTGAGTAGAAAAGAAATATTAGACAAAGTTGAAAGATGGATGTCTGCTTGTGAAGAAGA 1434 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 AAGCTGGCTTGAAGATTATAACCGGGATGACAACAGATATAACTCAAGCCGAGGTGCCCA 1498 consensus_12262#1 AAGCTGGCTTGAAGATTATAACCGGGATGACAACAGATATAACTCAAGCCGAGGTGCCCA 1494 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 CCTGAATCTCAAACGTGCTGAAAAGGCTCGGATTCTTGTCAACAAGATTCCAGCACTTGT 1558 consensus_12262#1 CCTGAATCTCAAACGTGCTGAAAAGGCTCGGATTCTTGTCAACAAGATTCCAGCACTTGT 1554 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 TGAAACTCTGGTGGCAAAGACCAGGGCATGGGAGGAGAGCCGTGGTCTGTCCTTTATGTA 1618 consensus_12262#1 TGAAACTCTGGTGGCAAAGACCAGGGCATGGGAGGAGAGCCGTGGTCTGTCCTTTATGTA 1614 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 TGATGGTGTACCTCTTCTAGCTATGTTGGATGAATATGTCATGCTAAGGCAGGAAAGGGA 1678 consensus_12262#1 TGATGGTGTACCCCTTCTCATCAGACTCTGT-AGTATAGCCTTTGCTGGTATGTATTACT 1673 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 AGAAGATAAGAAAAGAATGAGG-GAACAAAAGCGCTACATCGAGCAACAACTGAACACCG 1737 consensus_12262#1 ATTCGTTAACCTGTTTGCTACATGTAC--------------------------------- 1700 consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 ACCATGAAGGGCCATTTGGTTCACGTGTGAGCCCTAACAGACCAGTCAGTGCAAAGAAGG 1797 consensus_12262#1 ------------------------------------------------------------ consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 TACCTGGTGCAAAATCAAATGGCAGTGCTAATGGCACTCCTCCGAATAGGAGACTTTCGG 1857 consensus_12262#1 ------------------------------------------------------------ consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 TCAGCGGTCACCAGAACGGAAGGTCTGGAGGAAAGGATGGCAAGAGGGACTCTGCCAAGA 1917 consensus_12262#1 ------------------------------------------------------------ consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 CAGCTTCCCCCGGGAATGTAGCAGCTGCTAAGGAAGATGCATCCTCACACATTTCTGGCA 1977 consensus_12262#1 ------------------------------------------------------------ consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 CCGATCCGGTTCCGAGCACACCATGATCTTTAACCTTATGGTATATTAGATAAAGAGAGG 2037 consensus_12262#1 ------------------------------------------------------------ consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 ACAGTTTCTGATGTTTCCATTGATTTGTGGCTATATAATGTATTGTGTTTGTAGCGAGGA 2097 consensus_12262#1 ------------------------------------------------------------ consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 GTAATTATATAACGTCCATCCTTCAGGCAGGATCTTTTGCTTCTGTGGAGTAAGTGGAGT 2157 consensus_12262#1 ------------------------------------------------------------ consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 TCAACTTTTGATTAGTTCCCTCAGCTGTACTATTTCCCCTTCTCATCAGACTCTGTAGTA 2217 consensus_12262#1 ------------------------------------------------------------ consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 TAGCCTTTGCTGGTATGTATTACTATTCGTTAACCTGTTTGCTACATGTACAAGTTCTTG 2277 consensus_12262#1 ------------------------------------------------------------ consensus_12262#2 ------------------------------------------------------------ consensus_12262#0 GAATGCCTTTCCCCTGCAAAAAAAAAAAAAAA 2309 consensus_12262#1 -------------------------------- consensus_12262#2 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||