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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 558 fasta sequence
[CCATCGTAGTCGTCGTCGTTGACAGATGGAGATGAGGCGCCTGGCTGTGAGCGGCGGGAGGAGGAGGAGGATCA-GCCGG-CGACGGCG-CGGAGGA-GCGGCGTGGCGCTGAGGCGGAAGGTGCGGGAGCTCCGGCGGCTGGTGC-CCGGCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCG-CCGGCGTCTGAGCCCGCCG-CCGGG--GC-CGGTGGCGCGCCGCGATCGATCATTGC-TTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTA-TAGAAGA-A-GAATTGAATGAATTCATTTCGAA-CAAGACAGCATAAAAGACATTACTATTGAATTGTTTG-TTGTAGAGTGGATGGAGTTCATG-CAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAA]
[+] EMBL BI797373 [CCATCGTAGTCGTCGTCGTTGACAGATGGAGATGAGGCGCCTGGCTGTGAGCGGCGGGAGGAGGAGGAGGATCA GCCGG CGACGGCC CGGAGGA CGGCGTGGCGCTGAGGCGGAAGGTGCGGGAGCTCCGGCGGCTGGTGC CCGGCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGA GGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCG CCGGCGTCTGAGCCCGCCG CCGGG GC CGGTGGCGCGCCGCGATCGATCATTGC TTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTA TAGAAGA A GAATTGAATGAATTCATTTCGAA CAAGACAGCATAAAAGACATTACTATTGAATTGTTTG TTGTAGAGTGGATGGAGTTCATG CAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACCTGGAGTATATAATATATACCTCATCATGTGCTATTAA AAAAAA ]
[+] EMBL BI795804 [ ctcTTAACAGATGGAAATGA GCGCCTTGCTGTGA C GCGGGAGGAGGAGGAGGATCA GCCGG CGACGGCG CGGAGGA CGGCGTGGC CTGAGCAGGAA GT CGGGAGCTCC GCGGCTGGTGCACCGGCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCG CCGGCGTCTGAGCCCGCCG CCGGG GC CGGTGGCGC CCGCGATCGATCATTGC TTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTA TAGAAGA A GAATTGAATGAATTCATTTCGAA CAAGACAGCATAAAAGACATTACTATTGAATTGTTTG TTGTAGAGTGGATGGAGTTCATG CAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAA]
[+] EMBL BI799689 [ GTGAGCGCCGGGAGGAGGAGGAGGATCA GCCGG CGACGGCG CGGAGGACGCGGCGTGGCGCTGAGCCGGAAGGTCCGGGAGCTCC GCGGCTGGTGC CCGCCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCGCCCGGCGTCTGAGCCCGCCGCCCGGG GCGCGGTGGCGCGCCGCGATCGATCATTGC TTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTA TAGAAGA A GAATTGAATGAATTCATTTCGAA CAAGACAGCATAAAAGACATTACTATTGAATTGTTTG TTGTAGAGTGGATGGAGTTCATG CAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAA]
[+] EMBL OSC628 [ GCGGGAGGAGGAGGAGGATCA GGCGGNCGGCGGCG CGGAGGA GCGGCGTGGCGCTGAGGCGGAAGGTGCGGGAGCTCCGGCGGCTGGTGC CCGGCGGGGAGGGCGCGCCGGCAAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGAGGNTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTC ]
[+] EMBL BI798883 [ AGGAGGATCAGGCCGG CGACGGCG CGGAGGA GCGGCGTGGCGCTGAGGCGGAA GTGCGGGAGCTCCGGCGGCTGGTGC CCGGCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCG CCGGCGTCTGAGCCCGCCG CCGGG GCGCGGTGGCGCGCCGCGATCGATCATTGCATTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTA TAGAAGA A GAATTGAATGAATTCATTTCGAA CAAGACAGCATAAAAGACATTACTATTGAATTGTTTG TTGTAGAGTGGATGGAGTTCATG CAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATAaaaa ]
[+] EMBL BI798156 [ GGCGCCGGAGGA GCGGCGTGGCGCTGAGGCGGAAGGTGCGGGAGCTCCGGCGGCTGGTGC CCGGCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCG CCGGCGTCTGAGCCCGCCG CCGGGGCGC CGGTGGCGCGCCGCGATCGATCATTGC TTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTACTAGAAGACACGAATTGAATGAATTCATTTCGAACCAAGACAGCATAAAAGACATTACTATTGAATTGTTTGCTTGTAGAGTGGATGGAGTTCATGCCAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATCATATATACCTCATCATGTGCTATTAACTAAAAA ]
[+] EMBL BI798423 [ TACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGCCGCCG CCGGCGTCTGAGCCC CCG CCGGG GCGCGGTGGCGC CCGCGATCGATCATTGC TTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTA TAGAAGA A GAATTGAATGAATTCATTTCGAA CAAGACAGCATAAAAGACATTACTATTGAATTGTTTG TTGTAGAGTGGATGGAGTTCATG CAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATAaaa ]
consensusID : consensus_12263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[TCCCCAGCCGGGTGAAGGGCGCCCCCGGCCGAAGGAACCACTTGTCTTCGTCCCTGCCACCCCCCGAACTAACAATTCGTCCGGGCTCCAAGGCCGAGGTTCCGAGCTCCCTCAGGGCGCTCTCCGCGCTTTACGACGAGCTTTCCAACTCCCCAGCACAGGCACACACCAGCCAGGCAGTCTGAGCACCAGCCAGCACAGGGGCAGCAGGTGGCAGCAGCACAGCAGATCAGATCATTGCATTGCATTGCACACAGAGATGAGAGATATACAAGTAGCTATGTATAGAAGAAGAATTGAATGAATTCATTTCAGAACAAGACAAGCATAAAAGACAATTACTATTGAATTGTTTGTTGTAGAGTGGATGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATAAAAA]
[+] EMBL BI798775 [TCCCCAGCCGGGTGAAGGGCGCCCCCGGCCGAAGGAACCACTTGTCTTCGTCCCTGCCACCCCCCGAACTAACAATTCGTCCGGGCTCCAAGGCCGAGGTTCCGAGCTCCCTCAGGGCGCTCTCCGCGCTTTACGACGAGCTTTCCAACTCCCCAGCACAGGCACACACCAGCCAGGCAGTCTGAGCACCAGCCAGCACAGGGGCAGCAGGTGGCAGCAGCACAGCAGATCAGATCATTGCATTGCATTGCACACAGAGATGAGAGATATACAAGTAGCTATGTATAGAAGAAGAATTGAATGAATTCATTTCAGAACAAGACAAGCATAAAAGACAATTACTATTGAATTGTTTGTTGTAGAGTGGATGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATAAAAA]
consensusID : consensus_12263#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence
[GGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGNGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGTCTGAGCCCGCCGCCGGGGGCGGTGGCGCGCCGCGATCGATCATTGCTTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTATAGAAGAAGAATTGAATGAATTCATTTCGAACAAGACAGCATAAAAGACATCACTATTGAATTGTTTGTTGTAGAGTGGATGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAAA]
[+] EMBL C99329 [GGCGAGGAGCCTGCTCGTCCGCACCGCCGACTACATCGTCCGGCTCAAGGCGNGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCGCCGGCGTCTGAGCCCGCCGCCGGGGGCGGTGGCGCGCCGCGATCGATCATTGCTTGCTTGCACCGAGATGAGAGATATACAGTAGCTATGTATAGAAGAAGAATTGAATGAATTCATTTCGAACAAGACAGCATAAAAGACATCACTATTGAATTGTTTGTTGTAGAGTGGATGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAAA]
consensusID : consensus_12263#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[CGCCGCCTTCCTTACCGACGCGAGCCTGTGTCCAGCTTCCCCGCCCGGCGCCCGCCCGCCCGGCCGTTCTGAGCCCCGCCCGCCCGGGGCCGCCGGTGGCCGCCGCCCCGCCGATCCGATCCACTTGCCTTGCCTTGCCACCCGAGATGAGACGATATACCAGTAGCCTATGTATTAGAAGAAGAACTTGGAACTGGAATTTCCACGTTTCCGAACCCACAGGACACCACGCGCATCTTATAAAGAACCCACGTTTACCTATTGGGAACTTTGGTCTTTTCGTTTGTTTAAAGGACGTTTGGGGAATTGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATAAAAA]
[+] EMBL BI799413 [CGCCGCCTTCCTTACCGACGCGAGCCTGTGTCCAGCTTCCCCGCCCGGCGCCCGCCCGCCCGGCCGTTCTGAGCCCCGCCCGCCCGGGGCCGCCGGTGGCCGCCGCCCCGCCGATCCGATCCACTTGCCTTGCCTTGCCACCCGAGATGAGACGATATACCAGTAGCCTATGTATTAGAAGAAGAACTTGGAACTGGAATTTCCACGTTTCCGAACCCACAGGACACCACGCGCATCTTATAAAGAACCCACGTTTACCTATTGGGAACTTTGGTCTTTTCGTTTGTTTAAAGGACGTTTGGGGAATTGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTACAAGCTGTTATTTAGTTACATGGAGTATATAATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12263#0 CCATCGTAGTCGTCGTCGTTGACAGATGGAGATGAGGCGCCTGGCTGTGAGCGGCGGGAG 60
consensus_12263#2 ------------------------------------------------------------
consensus_12263#1 ------------------------------------------------------------
consensus_12263#3 ------------------------------------------------------------
consensus_12263#0 GAGGAGGAGGATCAGCCGGCGACGGCGCGGAGGAGCGGCGTGGCGCTGAGGCGGAAGGTG 120
consensus_12263#2 ------------------------------------------------------------
consensus_12263#1 ----------------------------------------------------------TC 2
consensus_12263#3 ------------------------------------------------------------
consensus_12263#0 CGGGAGCTCCGGCGGCTGGTGCCCGGCGGGGAGGGCGCGCCGGCGAGGAGCCTGCTCGTC 180
consensus_12263#2 -----------------------------------------GGCGAGGAGCCTGCTCGTC 19
consensus_12263#1 CCCAGCCGGGTGAAGGGCGCCCCCGGCCGAAGGAACCACTTGTCTTCGTCCCTGC-CACC 61
consensus_12263#3 ------------------------------------------------------------
consensus_12263#0 CGCACCGCCGACTACATCGTCCGG--CTCAAGGCGAGGGT--CGAGCTCC-TCAGGGCGC 235
consensus_12263#2 CGCACCGCCGACTACATCGTCCGG--CTCAAGGCGNGGGT--CGAGCTCC-TCAGGGCGC 74
consensus_12263#1 CCCCGAACTAACAAT-TCGTCCGGGCTCCAAGGCCGAGGTTCCGAGCTCCCTCAGGGCGC 120
consensus_12263#3 ---------------------------------------CGCCGCCTTCCTTACCGACGC 21
** *** * * ***
consensus_12263#0 TCTCCGCGCTCTACGACGAGCTTCC--ACTCCCCGCCGGCGCCGC-CGCCGGC------G 286
consensus_12263#2 TCTCCGCGCTCTACGACGAGCTTCC--ACTCCCC-------------GCCGGC------G 113
consensus_12263#1 TCTCCGCGCTTTACGACGAGCTTTCCAACTCCCCAGCACAGGCACACACCAGCCAGGCAG 180
consensus_12263#3 -----GAGC-CTGTGTCCAGCTTCC---CCGCCCGGCGCCCGCCC-GCCCGGCCG----T 67
* ** * * * ***** * * *** ** **
consensus_12263#0 TCTGAGC-----CCGCCGCCGGGGCCG---GTGGC----GCGCCGC-GATC-GATCA--T 330
consensus_12263#2 TCTGAGC-----CCGCCGCCGGGGGCG---GTGGC----GCGCCGC-GATC-GATCA--T 157
consensus_12263#1 TCTGAGCACCAGCCAGCACAGGGGCAGCAGGTGGCAGCAGCACAGCAGATCAGATCA--T 238
consensus_12263#3 TCTGAGCCCCGCCCGCC--CGGGGCCGCCGGTGGCCGCCGCCCCGCCGATCCGATCCACT 125
******* ** * **** * ***** ** * ** **** **** *
consensus_12263#0 TGC-TTGCTT---GCACCGAGATGAGA-GATATACA-GTAGC-TATGTAT-AGAAGAAGA 382
consensus_12263#2 TGC-TTGCTT---GCACCGAGATGAGA-GATATACA-GTAGC-TATGTAT-AGAAGAAGA 209
consensus_12263#1 TGCATTGCATTGCACACAGAGATGAGA-GATATACAAGTAGC-TATGTAT-AGAAGAAGA 295
consensus_12263#3 TGCCTTGCCTTGCCACCCGAGATGAGACGATATACCAGTAGCCTATGTATTAGAAGAAGA 185
*** **** * * ********* ******* ***** ******* *********
consensus_12263#0 ATT--GAAT--GAATT----CATTTC-GAAC----AAGACA-----------GCATAAAA 418
consensus_12263#2 ATT--GAAT--GAATT----CATTTC-GAAC----AAGACA-----------GCATAAAA 245
consensus_12263#1 ATT--GAAT--GAATT----CATTTCAGAAC----AAGACAA----------GCATAAAA 333
consensus_12263#3 ACTTGGAACTGGAATTTCCACGTTTCCGAACCCACAGGACACCACGCGCATCTTATAAAG 245
* * *** ***** * **** **** * **** *****
consensus_12263#0 GACA-----TTAC-TATTGAA-------------TTGTTTGTTGTAGAG-----TGGA-- 452
consensus_12263#2 GACA-----TCAC-TATTGAA-------------TTGTTTGTTGTAGAG-----TGGA-- 279
consensus_12263#1 GACAA----TTAC-TATTGAA-------------TTGTTTGTTGTAGAG-----TGGA-- 368
consensus_12263#3 AACCCACGTTTACCTATTGGGAACTTTGGTCTTTTCGTTTGTTTAAAGGACGTTTGGGGA 305
** * ** ***** * ******* * * ***
consensus_12263#0 --TGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTA----CAAGCTGTTATTTAGTT 506
consensus_12263#2 --TGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTAATTACAAGCTGTTATTTAGTT 337
consensus_12263#1 --TGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTA----CAAGCTGTTATTTAGTT 422
consensus_12263#3 ATTGGAGTTCATGCAGGCTGGCGGATAATCGATTAATTA----CAAGCTGTTATTTAGTT 361
************************************* *****************
consensus_12263#0 ACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAA- 558
consensus_12263#2 ACATGGAGTATATAATATATACCTCATCATGTGCTATTAACTAAAAAAAAAAA 390
consensus_12263#1 ACATGGAGTATATAATAAAAA-------------------------------- 443
consensus_12263#3 ACATGGAGTATATAATAAAAA-------------------------------- 382
***************** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||