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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1929 fasta sequence
[AAGGCCACAGCTTTCAATATAAACAAACACCAAACGAATCCCTTCTTAGCGGTAGTGCATCCCCATCCATCCATTCTCGCACAAGATTCCATCTTTTCATCCACCAATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTAGGAGGAGGAGGAGGAGGAGAAGATTAGGCGATGTCTTTCAGGAGCGTGATCCAGGAGGTGAAGGGCGAGATCGGCGCCATCTCGCGGCGGGGGTTCAGGTCGCGGCCGGGGCGAGTCCGGCGAGTGGCGGCGGCGGCGGAGGAGCCGCCGGACGAGTCGTCGGCGGCGGCGCTGGTGATGCGGGAGAGCTGCTGGACGCAGCTGCCGCCGGAGCTCCTGCGGGAGGTGCTGGCGAGGGTGGAGGAGTCGGAGGGGTGGTGGCCGCGCCGCCGCGACGTGGTGGCGTGCGCCGGCGTCTGCCGGAGCTGGAGGGGGATCGTCAGGGAGATCGTGCGCACCCCGGAGGCGTCCGGGAACCTCACCTTCCCAATCTCTCTCAAGCAGCCTGGCCCGAGGGATGCTCCTATGAAATGTTTCATTGTAAGGAACCGGACCACTCAGACATATTACCTGTACATTGGACTGACTGATGCATTAACTGATGATGGGAAGTTCCTACTTGCTGCACGCAAATGTCGTAGGACCACATGCACTGAGTACCTGATTTCGCTTGATATGAACGATATATCAAAGAGGACTGATAGTTATGTTGGCAAACTAAGATCTAACTTCTTGGG-AACCAAATTTACTATCTATGATGCCCATCCACCTTATGCTGGAGATGTGATTTCAAAGGGTCAGTCTGCACGTGTGATTGGTTCAAACCATTTATCCCCCAGGATACCTGCTGGGAATTATCCAGTCTCACATATTTCATATGAATTGAACGTTTTGGGTTCTAGGGGCCCGAGAAGGATGCACTGCGCTATGGATTCTATCCCTGTATCAGCAATTGAACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCTTTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGCGAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGTTGAAGAACAAGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAACGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAGATGAGAGTAACCCAACCAACCAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGTTCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGA----TCGAATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGGAAGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTAAATCTAACA-TTTTAGTTGGGTAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCT-GCAACAT-TTGA-GTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCACAATTGACAGCTCA-GGA-TTATGTGTATACTTGTCCCTTT-GGAAATCCATAGATGTATCTGTTTGCATAGATATGTTTATGTTACATTCTTCTATTACCAGAATGAAGCAGAGCTA-TTGGATCTTGTTTCAAAAAAAACATGAAATGTACATGAGACCCTTTTTTTTCACATCGAATAATGTTCTGGCTCAATTGTTCATGGAAAAAAAT]
[+] EMBL AK060587 [AAGGCCACAGCTTTCAATATAAACAAACACCAAACGAATCCCTTCTTAGCGGTAGTGCATCCCCATCCATCCATTCTCGCACAAGATTCCATCTTTTCATCCACCAATCTCGCGAAATCTCCGTCTAATTCAAGAACAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTAGGAGGAGGAGGAGGAGGAGAAGATTAGGCGATGTCTTTCAGGAGCGTGATCCAGGAGGTGAAGGGCGAGATCGGCGCCATCTCGCGGCGGGGGTTCAGGTCGCGGCCGGGGCGAGTCCGGCGAGTGGCGGCGGCGGCGGAGGAGCCGCCGGACGAGTCGTCGGCGGCGGCGCTGGTGATGCGGGAGAGCTGCTGGACGCAGCTGCCGCCGGAGCTCCTGCGGGAGGTGCTGGCGAGGGTGGAGGAGTCGGAGGGGTGGTGGCCGCGCCGCCGCGACGTGGTGGCGTGCGCCGGCGTCTGCCGGAGCTGGAGGGGGATCGTCAGGGAGATCGTGCGCACCCCGGAGGCGTCCGGGAACCTCACCTTCCCAATCTCTCTCAAGCAGCCTGGCCCGAGGGATGCTCCTATGAAATGTTTCATTGTAAGGAACCGGACCACTCAGACATATTACCTGTACATTGGACTGACTGATGCATTAACTGATGATGGGAAGTTCCTACTTGCTGCACGCAAATGTCGTAGGACCACATGCACTGAGTACCTGATTTCGCTTGATATGAACGATATATCAAAGAGGACTGATAGTTATGTTGGCAAACTAAGATCTAACTTCTTGGG AACCAAATTTACTATCTATGATGCCCATCCACCTTATGCTGGAGATGTGATTTCAAAGGGTCAGTCTGCACGTGTGATTGGTTCAAACCATTTATCCCCCAGGATACCTGCTGGGAATTATCCAGTCTCACATATTTCATATGAATTGAACGTTTTGGGTTCTAGGGGCCCGAGAAGGATGCACTGCGCTATGGATTCTATCCCTGTATCAGCAATTGAACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCTTTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGCGAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGTTGAAGAACAAGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAACGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAGATGAGAGTAACCCAACCAACCAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGTTCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGA TCGAATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGGAAGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTAAATCTAACA TTTTAGTTGGGTAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCT GCAACAT TTGA GTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCACAATTGACAGCTCA GGA TTATGTGTATACTTGTCCCTTT GGAAATCCATAGATGTATCTGTTTGCATAGATATGCTTATGTTACATTCTTCTATTACCAGAATGAAGCAGAGCTA TTGGATCTTGTTTCAAAAAAAACATGAAATGTACATGAGACCCTTTTTTTTCACATCGAATAATGTTCTGGCTCAATTGTTCATGGAAAAAAAT]
[+] EMBL AU068695 [ CACAGCTTTCAATATAAACAAACACCAAACGAATCCCTTCTTAGCGGTAGTGCATCCCCATCCATCCATTCTCGCACAAGATTCCATCTTTTCATCCACCAATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTAGGAGGAGGAGGAGGAGGAGAAGATTAGGCGATGTCTTTCAGGAGCGTGATCCAGGAGGTGAAGGGCGAGATCGGCGCCATCTCGCGGCGGGGGTTCAGGTCGCGGCCGGGGCGAGTCCGGCGAGTTGCGGCGGCGGCGGAGGAGCCGCGGAACGAGTCGTCGNCGGCGG ]
[+] EMBL CB676460 [ TTTCAATATAAACAAACACCAAACGAATCCCTTCTTAGCGGTAGTGCATCCCCATCCATCCATTCTCGCACAAGATTCCATCTTTTCATCCACCAATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTAGGAGGAGGAGGAGGAGGAGAAGATTAGGCGATGTCTTTCAGGAGCGTGATCCAGGAGGTGAAGGGCGAGATCGGCGCCATCTCGCGGCGGGGGTTCAGGTCGCGGCCGGGGCGAGTCCGGCGAGTGGCGGCGGCGGCGGAGGAGCCGCCGGACGAGTCGTCGGCGGCGGCGCTGGTGATGCGGGAGAGCTGCTGGACGCAGCTGCCGCCGGAGCTCCTGCGGGAGGTGCTGGCGAGGGTGGAGGAGTCGGAGGGGTGGTGGCCGCGCCGCCGCGACGTGGTGGCGTGCGCCGGCGTCTGCCGGAGCTGGAGGGGGATCGTCAGGGAGATCGTGCGCACCCCGGAGGCGTCCGGGAACCTCACCTTCCCAATCTCTCTCAAGCAGCCTGGCCCGAGGGATGCTCCTATGAAATGTTTCATTGTAAGGAACCGGACCACTCAGACATATTACCTGTACATTGGACTGACTGATGCATTAACTGATGATGGGAAGTTCCTACTTGCTGCACGCAAATGTCGTAAGACCACATGCACTGAGTACCTGATTTCGCTTGATATGAACGATATATCAAAGAGGACTGATAGTTATGTTGGCAAACTAAGATCTAACTTCTTGGGAAACCAAATTTACTATCT ]
[+] EMBL AK071159 [ TGCATCCCCATCCATCCATTCTCGCACAAGATTCCATCTTTTCATCCACCAATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTAGGAGGAGGAGGAGGAGGAGAAGATTAGGCGATGTCTTTCAGGAGCGTGATCCAGGAGGTGAAGGGCGAGATCGGCGCCATCTCGCGGCGGGGGTTCAGGTCGCGGCCGGGGCGAGTCCGGCGAGTGGCGGCGGCGGCGGAGGAGCCGCCGGACGAGTCGTCGGCGGCGGCGCTGGTGATGCGGGAGAGCTGCTGGACGCAGCTGCCGCCGGAGCTCCTGCGGGAGGTGCTGGCGAGGGTGGAGGAGTCGGAGGGGTGGTGGCCGCGCCGCCGCGACGTGGTGGCGTGCGCCGGCGTCTGCCGGAGCTGGAGGGGGATCGTCAGGGAGATCGTGCGCACCCCGGAGGCGTCCGGGAACCTCACCTTCCCAATCTCTCTCAAGCAGCCTGGCCCGAGGGATGCTCCTATGAAATGTTTCATTGTAAGGAACCGGACCACTCAGACATATTACCTGTACATTGGACTGACTGATGCATTAACTGATGATGGGAAGTTCCTACTTGCTGCACGCAAATGTCGTAGGACCACATGCACTGAGTACCTGATTTCGCTTGATATGAACGATATATCAAAGAGGACTGATAGTTATGTTGGCAAACTAAGATCTAACTTCTTGGG AACCAAATTTACTATCTATGATGCCCATCCACCTTATGCTGGAGATGTGATTTCAAAGGGTCAGTCTGCACGTGTGATTGGTTCAAACCATTTATCCCCCAGGATACCTGCTGGGAATTATCCAGTCTCACATATTTCATATGAATTGAACGTTTTGGGTTCTAGGGGCCCGAGAAGGATGCACTGCGCTATGGATTCTATCCCTGTATCAGCAATTGAACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCTTTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGCGAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGTTGAAGAACAAGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAACGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAGATGAGAGTAACCCAACCAACCAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGTTCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGA TCGAATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGGAAGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTAAATCTAACA TTTTAGTTGGGTAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCT GCAACAT TTGA GTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCACAA ]
[+] EMBL CA765962 [ AACAGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAGATGAGAGTAACCCAACCAACCAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGTTCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCCTCCATGATATCTCGAATGAACCGTTTCCTGATCACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGG AGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTACATCTAACA TTTTAGTTGGATAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCT GCAACAT TTGA GTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCACAATTGACAGCTCA GGA TTATGTGTATACTTGTCCCTTT GGAAATCCATAGATGTATCTGTTTGCATAGATATGTTTATGNTACATTCTTCTATTACCAGAATGAAGCAGAGCTATTTGGATCTTG ]
[+] EMBL BQ907687 [ TTCCATGATATCTCGAATGAACCGTTTCCTGATCACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGG AGCAT CAGAATAGAGACATAAATAAAAGTTGCTTTACATCTAACACTTTTAGTTGGATAGGGATATGTAACCTGCCATTTAGCTTTCTTGAAGTATGTTCAACCT GCAACAT TTGA GTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCAC ATTGACAGCTCA GGA TTATGTGTATACTTGTCCCTTT GGAAATCCATAGATGTATCTGTTTGCATAGATATGTTTATGTTACATTCTTCTATTACCAGAATGAA CAGAGCTA TTGGATCTTGTTTC AAAAATCATGAAAaaaa ]
[+] EMBL BI811483 [ tcTCAACCTCGCAACATCTTGACGTGACTTGTAAGTCCTGAGTTAAACTACAGGTGTTGGATAACCACATTTGACAGCTCACGGACTTATGTGTATACTTGTCCCTTTCGGAAATCCATAGATGTATCTGTTTGCATAaaaa ]
consensusID : consensus_12269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 911 fasta sequence
[CCATTCTCGCACAAGATTCCATCTTTTCATCCACCATATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTACGAGGAGGAGGAGGAGGAGAAGATTATGTGATGTCTTTCATGAGCGTGATTCAAGAGGTGAATGGCGAGATCCGCGCTATTTGTCGAGAGTGGTTCAGGTTGTGGCCGGAGCGAGTTCGGCGTGTGTTTTGTGCTGCATATTGACCGACAGACTATGTCGTTTGTAGCTGGTCTGAGTAATCTGGAGAGCTGTTGGATGCTGTTGTAACGGTGCTCTTGTTGGATGGGCTAGTATATGTGGAGGAATTGGTAGGTATGTGGCTGGTGTTCGATGGTGTGGGCAAGTGTCTTGATATGCATTCTGATAAGGTATTGATATGGAATTATTGTGTTCTCAAATTGTCATGGAGATTATTTTGTATATGTTTCGTTACCTGTAGTTGGATGAATTGTTATGTTCGTATTGTGAGTATAGTATTTTCTATTGGTGTGTATGAAGTGTGTAAGCGAGGGTGTTGAGGGTTGTTCTGGATCTGGTGGCTGTGTGTGATAATTCTTGGGAAGATTTAGAATATATTTTATCAATCATCTTATTGTGTTATATGTTTTTAGTGTAGCTGGTGTAAAATATGATGCTATGCTGATATGAGAATGTATTAGATGTGAGAATGTTGTTTTGTAATATTAGTATGTAGAAGTGATATTATTGAGATTGTTGATTTAGTATTGTATATTGTGTGAAATATATGGATTAGTCAATATATTGGTAGTTAGAATACTTGTGGCGGAAATAAATGAGTTGAAGTAGTAGTTGGTATCTACGGATATGATTC]
[+] EMBL AW154983 [CCATTCTCGCACAAGATTCCATCTTTTCATCCACCATATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTACGAGGAGGAGGAGGAGGAGAAGATTATGTGATGTCTTTCATGAGCGTGATTCAAGAGGTGAATGGCGAGATCCGCGCTATTTGTCGAGAGTGGTTCAGGTTGTGGCCGGAGCGAGTTCGGCGTGTGTTTTGTGCTGCATATTGACCGACAGACTATGTCGTTTGTAGCTGGTCTGAGTAATCTGGAGAGCTGTTGGATGCTGTTGTAACGGTGCTCTTGTTGGATGGGCTAGTATATGTGGAGGAATTGGTAGGTATGTGGCTGGTGTTCGATGGTGTGGGCAAGTGTCTTGATATGCATTCTGATAAGGTATTGATATGGAATTATTGTGTTCTCAAATTGTCATGGAGATTATTTTGTATATGTTTCGTTACCTGTAGTTGGATGAATTGTTATGTTCGTATTGTGAGTATAGTATTTTCTATTGGTGTGTATGAAGTGTGTAAGCGAGGGTGTTGAGGGTTGTTCTGGATCTGGTGGCTGTGTGTGATAATTCTTGGGAAGATTTAGAATATATTTTATCAATCATCTTATTGTGTTATATGTTTTTAGTGTAGCTGGTGTAAAATATGATGCTATGCTGATATGAGAATGTATTAGATGTGAGAATGTTGTTTTGTAATATTAGTATGTAGAAGTGATATTATTGAGATTGTTGATTTAGTATTGTATATTGTGTGAAATATATGGATTAGTCAATATATTGGTAGTTAGAATACTTGTGGCGGAAATAAATGAGTTGAAGTAGTAGTTGGTATCTACGGATATGATTC]
consensusID : consensus_12269#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence
[ACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCTTTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGCGAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGTTGAAGAACAAGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAACGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAGATGAGAGTAACCCAACCAACCAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGTTCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGATCGAATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGGAAGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTAAATCTAACATTTTAGTTGGGTAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCTGCAACATTTGAGTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCACAATTGACAGCTCAGGATTATGTGTATACTTGTCCCTTAGGGAATCCATAGATGTATCTGTTTGCATAAAAAAATTAAAAGA]
[-] EMBL CB676461 [ACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCTTTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGCGAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGTTGAAGAACAAGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAACGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAGATGAGAGTAACCCAACCAACCAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGTTCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGATCGAATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTCCACCTTTTGGAAGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTAAATCTAACATTTTAGTTGGGTAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCTGCAACATTTGAGTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCACAATTGACAGCTCAGGATTATGTGTATACTTGTCCCTTAGGGAATCCATAGATGTATCTGTTTGCATAAAAAAATTAAAAGA]
consensusID : consensus_12269#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence
[CTGGCCATGCNCTNTGNTTAGTTGCTTCCCCCTTTTGGAAGCATGCAGAATAAAGACATAAATAAAAGTTGCTTTAAATCTAACATTTTAGTTGGGTAGGGANATGTAACCTGCAATTTAGCTTTNTTNAAGTATGTTCAACCTGCAACATTTGAGTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCNCAATTGACAGCTCNAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU166730 [CTGGCCATGCNCTNTGNTTAGTTGCTTCCCCCTTTTGGAAGCATGCAGAATAAAGACATAAATAAAAGTTGCTTTAAATCTAACATTTTAGTTGGGTAGGGANATGTAACCTGCAATTTAGCTTTNTTNAAGTATGTTCAACCTGCAACATTTGAGTGACTTGTAAGTCTTGAGTTTAACTACAGGTGTTGGATAACCNCAATTGACAGCTCNAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 AAGGCCACAGCTTTCAATATAAACAAACACCAAACGAATCCCTTCTTAGCGGTAGTGCAT 60
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 CCCCATCCATCCATTCTCGCACAAGATTCCATCTTTTCATCCACCAATCTCGCGAAATCT 120
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 CCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGAAATATTGGTGTTGCGAATTG 180
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 TGGATTGGGAATTTGGAGTTTGGATTAGGAGGAGGAGGAGGAGGAGAAGATTAGGCGATG 240
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 TCTTTCAGGAGCGTGATCCAGGAGGTGAAGGGCGAGATCGGCGCCATCTCGCGGCGGGGG 300
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 TTCAGGTCGCGGCCGGGGCGAGTCCGGCGAGTGGCGGCGGCGGCGGAGGAGCCGCCGGAC 360
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 GAGTCGTCGGCGGCGGCGCTGGTGATGCGGGAGAGCTGCTGGACGCAGCTGCCGCCGGAG 420
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 CTCCTGCGGGAGGTGCTGGCGAGGGTGGAGGAGTCGGAGGGGTGGTGGCCGCGCCGCCGC 480
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 GACGTGGTGGCGTGCGCCGGCGTCTGCCGGAGCTGGAGGGGGATCGTCAGGGAGATCGTG 540
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 CGCACCCCGGAGGCGTCCGGGAACCTCACCTTCCCAATCTCTCTCAAGCAGCCTGGCCCG 600
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 AGGGATGCTCCTATGAAATGTTTCATTGTAAGGAACCGGACCACTCAGACATATTACCTG 660
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 TACATTGGACTGACTGATGCATTAACTGATGATGGGAAGTTCCTACTTGCTGCACGCAAA 720
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 TGTCGTAGGACCACATGCACTGAGTACCTGATTTCGCTTGATATGAACGATATATCAAAG 780
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 AGGACTGATAGTTATGTTGGCAAACTAAGATCTAACTTCTTGGGAACCAAATTTACTATC 840
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 TATGATGCCCATCCACCTTATGCTGGAGATGTGATTTCAAAGGGTCAGTCTGCACGTGTG 900
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 ATTGGTTCAAACCATTTATCCCCCAGGATACCTGCTGGGAATTATCCAGTCTCACATATT 960
consensus_12269#1 -----------------------------CCATTCTCGCACAAGATTCCATCTTTTCATC 31
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 TCATATGAATTGAACGTTTTGGGTTCTAGGGGCCCGAGAAGGATGCACTGCGCTATGGAT 1020
consensus_12269#1 CACCATATCTCGCGAAATCTCCGTCTAATTCAAGAAAAGATGAGCTGAGGAATGAGAGGA 91
consensus_12269#2 -----------------------ACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCT 37
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 TCTATCCCTGTATCAGCAATTGAACAAGGAGGAACAGCTCCGACGCAGACTGAATTTCCT 1080
consensus_12269#1 AATATTGGTGTTGCGAATTGTGGATTGGGAATTTGGAGTTTGGATTACGAGGAGGAGGAG 151
consensus_12269#2 TTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGC- 96
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 TTGAGTTACCATGAATCTTTCACATCAATTCCCTTTTTCAAATCAAAATCAGTTCGAGC- 1139
consensus_12269#1 GAGGAGAAGATTATGTGATGTCTTTCATGAGCGTGATTCAAGAGGTGAATGGCGAGATCC 211
consensus_12269#2 GAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGT-TGAAGAACA 155
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 GAATAATTCAACTGCTTCATTACTCACTCAAAATGGAAGCAAACTGGTGT-TGAAGAACA 1198
consensus_12269#1 GCGCTATTTGTCGAGAGTGGTTCAGGTTGTGGCCGGAGCGAGTTCGGCGTGTGTTTTGTG 271
consensus_12269#2 AGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAA 215
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 AGTCCCCGAGGTGGCACGAACATCTGCAGTGCTGGTGCCTTAACTTCCATGGACGGGTAA 1258
consensus_12269#1 CTGCATATTGACCGACAGACTATGTCGTTTGTAGCTGGTCTGAGTAATCTGGAGAGCTGT 331
consensus_12269#2 CGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAG---ATGAGAGTAACCCAACCA 272
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 CGGTTGCATCGGTAAAGAACTTCCAGCTGGTGGCTTCAG---ATGAGAGTAACCCAACCA 1315
consensus_12269#1 TGGATGCTGTTGTAACGGTGCTCTTGTTGGATGGGCTAGTATATGTGGAGGAATTGGTAG 391
consensus_12269#2 AC------CAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGT 326
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 AC------CAGGAACACGATGATGTGATCCTCCAGTTTGGTAAAGTTGGGAAGGACATGT 1369
consensus_12269#1 GTATGTGGCTGGTGTTCGATGGTGTGGGCAAGTGTCTTGATATGCATTCTGATAAGGTAT 451
consensus_12269#2 TCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCA 386
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 TCACCATGGATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCA 1429
consensus_12269#1 TGATATGGAATTATTGTGTTCTCAAATTGTCATGGAGATTATTTTGTATATGTTTCGTTA 511
consensus_12269#2 GCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGATCGA 446
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 GCTTTGACACCAAAATAGCGTGCGAATGAGTGAAGGTGTGATTCTTTCTTCCATGATCGA 1489
consensus_12269#1 CCTGTAGTTGGATGAATTGTTATGTTCGTATTGTGAGTATAGTATTTTCTATTGGTGTGT 571
consensus_12269#2 ATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTC 506
consensus_12269#3 --------------------------------CTGGCCATGCNCTNTGNTTAGTTGCTTC 28
consensus_12269#0 ATGAACCGTTTCCTGATGACCCACATTGCAAGCTGGCCATGCACTCTGCTTAGTTGCTTC 1549
consensus_12269#1 ATGAAGTGTG---TAAGCGAGGGTGTTGAGGGTTGTTCTGGATCTGGTGGCTGTGTGTGA 628
** * * ** ** *
consensus_12269#2 CACCTTTTGGAAGCATGCAGAATAGAGAC-ATAAATAAAA--GTTGCTTTAAAT-CTAAC 562
consensus_12269#3 CCCCTTTTGGAAGCATGCAGAATAAAGAC-ATAAATAAAA--GTTGCTTTAAAT-CTAAC 84
consensus_12269#0 CACCTTTTGGAAGCATGCAGAATAGAGAC-ATAAATAAAA--GTTGCTTTAAAT-CTAAC 1605
consensus_12269#1 TAATTCTTGGGAAGATTTAGAATATATTTTATCAATCATCTTATTGTGTTATATGTTTTT 688
* **** * ** ****** * ** *** * *** *** ** *
consensus_12269#2 ATTTTAGTTGGGTAGGGATATG----TAACCTGCAATTTAGCTTTCTTGAA-----GTAT 613
consensus_12269#3 ATTTTAGTTGGGTAGGGANATG----TAACCTGCAATTTAGCTTTNTTNAA-----GTAT 135
consensus_12269#0 ATTTTAGTTGGGTAGGGATATG----TAACCTGCAATTTAGCTTTCTTGAA-----GTAT 1656
consensus_12269#1 AGTGTAGCTGGTGTAAAATATGATGCTATGCTGATATGAGAATGTATTAGATGTGAGAAT 748
* * *** *** * *** ** *** ** * * ** * * **
consensus_12269#2 GTTCAACCTGCAACATTTGAGTG---ACTTGTAAGTCTTGAGTTTAACTACA-GGTGTTG 669
consensus_12269#3 GTTCAACCTGCAACATTTGAGTG---ACTTGTAAGTCTTGAGTTTAACTACA-GGTGTTG 191
consensus_12269#0 GTTCAACCTGCAACATTTGAGTG---ACTTGTAAGTCTTGAGTTTAACTACA-GGTGTTG 1712
consensus_12269#1 GTT-GTTTTGTAATATTAGTATGTAGAAGTGATATTATTGAGATTGTTGATTTAGTATTG 807
*** ** ** *** * ** * ** * * ***** ** * ** ***
consensus_12269#2 GATAACCACAATTGACAGCTCAGGATTATGTGTATACTTGTCCCTTAGGGAATCCATAGA 729
consensus_12269#3 GATAACCNCAATTGACAGCTCNAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 240
consensus_12269#0 GATAACCACAATTGACAGCTCAGGATTATGTGTATACTTGTCCCTTTGGAAATCCATAGA 1772
consensus_12269#1 TATA---TTGTGTGAAATATATGGATTAGTCAATATATTGGTAGTTAGAATACTTGTGGC 864
*** *** * * * *
consensus_12269#2 TGTATCTGTTTGCATAAAAAAATTAAAAGA------------------------------ 759
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 TGTATCTGTTTGCATAGATATGTTTATGTTACATTCTTCTATTACCAGAATGAAGCAGAG 1832
consensus_12269#1 GGAAATAAATGAGTTGAAGTAGTAGTTGGTATCTACGGATATGATTC------------- 911
consensus_12269#2 ------------------------------------------------------------
consensus_12269#3 ------------------------------------------------------------
consensus_12269#0 CTATTGGATCTTGTTTCAAAAAAAACATGAAATGTACATGAGACCCTTTTTTTTCACATC 1892
consensus_12269#1 ------------------------------------------------------------
consensus_12269#2 -------------------------------------
consensus_12269#3 -------------------------------------
consensus_12269#0 GAATAATGTTCTGGCTCAATTGTTCATGGAAAAAAAT 1929
consensus_12269#1 -------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||