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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1746 fasta sequence
[CACGCAGTTGGCACCAACTCCCCACCACTTCGCTTCGCTTCCCTTCCCTCCTCACCTCTCCCGCGCGCGCGAGTTTAACCGCTTAATTATAACCGCCTCTCGGATTAGCGCGGCTATAATACCGCGCGCGATTGGNTGATTAGCCCTAGGCAACGCTCGCTAACACGCCACCACCTCGGCTTCGCTGTTTGCTGTTTGCTGCTGCTGCTTCTAGGGTTAGGGTTTGGGGTGGGGAGGGGTGGATGCGCGTGGGCTGGTGGTGGTGGTGGGGATGACGCCGCAGCGGTCTCCGGCGGCGGCGGCGGCGGGGGGAGGGGGCACGCCGGCGCTGCACTACCTGAGCGGGCCGTACGGGGACACGACGTACACCAAGGTGTTCGTCGGGGGGCTCGCGTGGGAGACGCGGAGCGAGGGGCTGAGGGCGCACTTCGAGGCGTACGGGGAGATCCTCGAGGCCGTCGTCATCACCGACCGCGCCACGGGGAGGTCCAAGGGCTACGGATTCGTGACCTTCCGGGACCCAGACTCGGCGAGAATGGCGTGCATGGACCCGTACCCGGTGATCGACGGGCGCCGCGCAAACTGTAACCTTGCCATCCTAGGCCGTCCTGGGCCAGACATACCTTTCGCACCTTTAAGGCCGGTCATCCCATACAATGGAGGTGTGGCGGTTCCAGGGGGCATGTATGTGCAAAGCCCAACATATCAGCAACCCCCCTACAACTATCCACAGGCATTTGTATATCCTTCTTATGGACCATCAACTTATGGGCCAGAATACATGTATCCTCAGAATGCATATGGTTCATATGTTGGGCAACAGTATGTTCCAGTATATGGCGGTCCCAGGACAGTAGGCCCAGCAGTTTACCCATATGGGCAGTTTGGCCAACCTGTGCCAGGTGATCAACCGTATTCACCTGGCTATGTACCAGGTCGCATTCTGCCGCTATCTAATCAGAATGCTGCAAATGTTGTACGCATGTCAACAGTTCAGCAACAATATCCTCCAGGAGCTCCACGCCCTCAGCAACAGCTCTTGATCCCTGCTCGTGCACAATTCACACCAAACAACATTTCGGAACAAACGTCGGGCTGACATAAGGATGCCAACAAGTACAAATTTGAGGTATCCTATAGTCTGCAGCAGGACTAAGAACAGCAGAACTGCTAATTGGGCGGCATGCTTCTTTTCTTGCAAACTGTCATCTTTTGCATTCTAAAGGTTCTCCTTATCCATGGTTACCTGATCCATATAAAATGTGAATGTCAAGCTGCTCCGTTGGAAGGGGCAGGAAGGCGTGAGAGTTTCGAAGCCACTCTTGCGCTGCTTCTGTCAAGTGTCTGTGCATTCCCCATCTCCTGCCAGGAATTCTGATAGCTGGTGGCCTGTACATGGACCAAAACTGGATGCCGGAAATGGAGTCCGGAATCCAGCCCTGTGTATAATAGCTCAAGTAGGGTCCAAAATCGTAGAGCTAGTCAATTCTTTCAAACGTTGCTGAT-GCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTGTGTTGCATTATGTA-CAGCATTAGGGCGTTGGGTCGCGTCCTC-GGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCA-CTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAATCAACTGCTCCTACCTGTTAAA]
[+] EMBL C72383 [CACGCAGTTGGCACCAACTCCCCACCACTTCGCTTCGCTTCCCTTCCCTCCTCACCTCTCCCGCGCGCGCGAGTTTAACCGCTTAATTATAACCGCCTCTCGGATTAGCGCGGCTATAATACCGCGCGCGATTGGNTGATTAGCCCTAGGCAACGCTCGCTAACACGCCACCACCTCGGCTTCGCTGTTTGCTGTTTGCTGCTGCTGCTTCTAGGGTTAGGGTTTGGGGTGGGGAGGGGTNGANGCGCGTG ]
[+] EMBL AK065654 [ CTCCCCACCACTTCGCTTCGCTTCCCTTCCCTCCTCACCTCTCCCGCGCGCGCGAGTTTAACCGCTTAATTATAACCGCCTCTCGGATTAGCGCGGCTATAATACCGCGCGCGATTGGCTGATTAGCCCTAGGCAACGCTCGCTAACACGCCACCACCTCGGCTTCGCTGTTTGCTGTTTGCTGCTGCTGCTTCTAGGGTTAGGGTTTGGGGTGGGGAGGGGTGGATGCGCGTGGGCTGGTGGTGGTGGTGGGGATGACGCCGCAGCGGTCTCCGGCGGCGGCGGCGGCGGGGGGAGGGGGCACGCCGGCGCTGCACTACCTGAGCGGGCCGTACGGGGACACGACGTACACCAAGGTGTTCGTCGGGGGGCTCGCGTGGGAGACGCGGAGCGAGGGGCTGAGGGCGCACTTCGAGGCGTACGGGGAGATCCTCGAGGCCGTCGTCATCACCGACCGCGCCACGGGGAGGTCCAAGGGCTACGGATTCGTGACCTTCCGGGACCCAGACTCGGCGAGAATGGCGTGCATGGACCCGTACCCGGTGATCGACGGGCGCCGCGCAAACTGTAACCTTGCCATCCTAGGCCGTCCTGGGCCAGACATACCTTTCGCACCTTTAAGGCCGGTCATCCCATACAATGGAGGTGTGGCGGTTCCAGGGGGCATGTATGTGCAAAGCCCAACATATCAGCAACCCCCCTACAACTATCCACAGGCATTTGTATATCCTTCTTATGGACCATCAACTTATGGGCCAGAATACATGTATCCTCAGAATGCATATGGTTCATATGTTGGGCAACAGTATGTTCCAGTATATGGCGGTCCCAGGACAGTAGGCCCAGCAGTTTACCCATATGGGCAGTTTGGCCAACCTGTGCCAGGTGATCAACCGTATTCACCTGGCTATGTACCAGGTCGCATTCTGCCGCTATCTAATCAGAATGCTGCAAATGTTGTACGCATGTCAACAGTTCAGCAACAATATCCTCCAGGAGCTCCACGCCCTCAGCAACAGCTCTTGATCCCTGCTCGTGCACAATTCACACCAAACAACATTTCGGAACAAACGTCGGGCTGACATAAGGATGCCAACAAGTACAAATTTGAGGTATCCTATAGTCTGCAGCAGGACTAAGAACAGCAGAACTGCTAATTGGGCGGCATGCTTCTTTTCTTGCAAACTGTCATCTTTTGCATTCTAAAGGTTCTCCTTATCCATGGTTACCTGATCCATATAAAATGTGAATGTCAAGCTGCTCCGTTGGAAGGGGCAGGAAGGCGTGAGAGTTTCGAAGCCACTCTTGCGCTGCTTCTGTCAAGTGTCTGTGCATTCCCCATCTCCTGCCAGGAATTCTGATAGCTGGTGGCCTGTACATGGACCAAAACTGGATGCCGGAAATGGAGTCCGGAATCCAGCCCTGTGTATAATAGCTCAAGTAGGGTCCAAAATCGTAGAGCTAGTCAATTCTTTCAAACGTTGCTGAT GCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTGTGTTGCATTATGTA CAGCATTAGGGCGTTGGGTCGCGTCCTC GGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCA CTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAATCAACTGCTCCTACCTG ]
[+] EMBL OSR17561A [ ACGCCACCACCTCGGCTTCGCTGTTTGCTGTTTGCTGCTGCTGCTTCTAGGGTTAGGGTTTGGGGTGGGGAGGGGTGGATGCGCGTGGGCTGGTGGTGGTGGTGGGGATGACGCCGCAGCGGTCTCCGGCGGCGGCGGCGGCGGGGGGAGGGGGCACGCCGNCGCTGCACTACCTGAGCGGGCCGTACGGGGACANGACGTACACCAAGGTGTTCGTCGGGGGGCTCGCGTGGGANACGCGGANANNGNNGCTGAGGGCGCACTTCGAGGCGTACGGGGAGATCCTCGAGGCCGTCGTCATCACCGACCGCGCCACGGGGAGNTCCAAGGTCTACGGAT ]
[+] EMBL CB652970 [ GACCCTTCAACGGTCTCCGGCGGCGGCGGCGGCGGGGGGAGGGGGCACGCCGGCGCTGCACTACCTGAGCGGGCCGTACGGGGACACGACGTACACCAAGGTGTTCGTCGGGGGGCTCGCGTGGGAGACGCGGAGCGAGGGGCTGAGGGCGCACTTCGAGGCGTACGGGGAGATCCTCGAGGCCGTCGTCATCACCGACCGCGCCACGGGGAGGTCCAAGGGCTACGGATTCGTGACCTTCCGGGACCCATACTCGGCGAGAATGGCGTGCATGGACCCGTACCCGGTGATCTACGGGCGCCGCGCAAACTGTAACCTTGCCATCCTAGGCCGTCCTGGGCCAGACATACCTTTCGCACCTTTAAGGCCGGTCATCCCATACAATGGAGGTGTGGCGGTTCCAGGGGGCATGTATGTGCAAAGCCCAACATATCAGCAACCCCCCTACAACTATCCACAGGCATTTGTATATCCTTCTTATGGACCATCAACTTATGGGCCAGAATACATGTATCCTCAGAATGCATATGGTTCATATGTTGGGCAACAGTATGTTCCAGTATATGGCGGTCCCAGGACAGTAGGCCCAGCAGTTTACCCATATGGGCAGTTTGGCCAACCTGTGCCAGGTGATCAACCGTATTCACCTGGCTATGTACCAGGTCACATTCTGC ]
[+] EMBL CF196998 [ CGGGCCGTACGGGGACACGACGTACACCAAGGTGTTCGTCGGGGGGCTCGCGTGGGAGACGCGGAGCGAGGGGCTGAGGGCGCACTTCGAGGCGTACGGGGAGATCCTCGAGGCCGTCGTCATCACCGACCGCGCCACGGGGAGGTCCAAGGGCTACGGATTCGTGACCTTCCGGGACCCAGACTCGGCGAGAATGGCGTGCATGGACCCGTACCCGGTGATCGACGGGCGCCGCGCAAACTGTAACCTTGCCATCCTAGGCCGTCCTGGGCCAGCCATGCCTTTCGCACCTTTAAGGCCGGTCATCCCATACAATGGAGGTGTGGCGGTTCCAGGGGGCATGTATGTGCAAAGCCCAACATATCAGCAACCCCCCTACAACTATCCACAGGCATTTGTATATCCTTCTTATGGANNATCAACTTATGGGNNNNNNNANNNGTATCCNNNNNATGCATATGNNNCATATGTTGGGCnnnnnnat ]
[-] EMBL CB681569 [ GAACAAACGTCGGGCTGACATAAGGATGCCAACAAGTACAAATTTGAGGTATCCTATAGTCTGCAGCAGGACTAAGAACAGCAGAACTGCTAATTGGGCGGCATGCTTCTTTTCTTGCAAACTGTCATCTTTTGCATTCTAAAGGTTCTCCTTATCCATGGTTACCTGATCCATATAAAATGTGAATGTCAAGCTGCTCCGTTGGAAGGGGCAGGAAGGCGTGAGAGTTTCGAAGCCACTCTTGCGCTGCTTCTGTCAAGTGTCTGTGCATTCCCCATCTCCTGCCAGGAATTCTGATAGCTGGTGGCCTGTACATGGACCAAAACTGGATGCCGGAAATGGAGTCCGGAATCCAGCCCTGTGTATAATAGCTCAAGTAGGGTCCAAAATCGTAGAGCTAGTCAATTCTTTCAAACGTTGCTGAT GCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTGTGTTGCATTATGTA CAGCATTAGGGCGTTGGGTCGCGTCCTC GGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCA CTTTATATGCTAC AGGGACTAAATAATGGCAG ]
[+] EMBL AU184203 [ AGGAAGGCGTGAGAGTTTNGAAGCCACTCTTGCGCTGCTTCTGTCAAGTGTCTGTGCATTCCCCATCTCCTGCCAGGAATTNTGATAGCTGGTGGCCTGTACATGGACCAAAACTGGATGCCGGAAATGGAGTCCGGAATCCAGCCCTGTGTATAATAGCTCAAGTAGGGTCCAAAATCGTAGAGCTAGTCAATTCTTTCAAACGTTGCTGAT GCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTGTGTTGCATTATGTA CAGCATTAGGGCGTTGGGTCGCGTCCTC GGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCA CTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAAAAA ]
[+] EMBL AU101144 [ gtcCCAAAATCNTAGAGCTAGTCAATTCTTTCAAACGTNGCTGATAGCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTGTGTTGCATTATGTAGCAGCATTAGGGCGTTGGGTCGCGTCCTCGGGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCANCTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAATCAACTGCTCCTACCTGTTAAA]
[+] EMBL AU031790 [ AATTCTTTCAAACGTTGCTGAT GCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTCATCTCCAATGCATGTGATTGTGTTGCATTATGTA CAGNATTAGGGCGTTGGGTCGCGTCCTC GGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCA CTTTATATGCAACGTGTAACTAAATAATGGNCGTTCCAATCCTNGAAAAAAA ]
consensusID : consensus_12270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 123 fasta sequence
[GTAAAACTGTTTATATCACTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF329560 [GTAAAACTGTTTATATCACTTTATATGCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12270#0 CACGCAGTTGGCACCAACTCCCCACCACTTCGCTTCGCTTCCCTTCCCTCCTCACCTCTC 60
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 CCGCGCGCGCGAGTTTAACCGCTTAATTATAACCGCCTCTCGGATTAGCGCGGCTATAAT 120
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 ACCGCGCGCGATTGGNTGATTAGCCCTAGGCAACGCTCGCTAACACGCCACCACCTCGGC 180
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 TTCGCTGTTTGCTGTTTGCTGCTGCTGCTTCTAGGGTTAGGGTTTGGGGTGGGGAGGGGT 240
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 GGATGCGCGTGGGCTGGTGGTGGTGGTGGGGATGACGCCGCAGCGGTCTCCGGCGGCGGC 300
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 GGCGGCGGGGGGAGGGGGCACGCCGGCGCTGCACTACCTGAGCGGGCCGTACGGGGACAC 360
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 GACGTACACCAAGGTGTTCGTCGGGGGGCTCGCGTGGGAGACGCGGAGCGAGGGGCTGAG 420
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 GGCGCACTTCGAGGCGTACGGGGAGATCCTCGAGGCCGTCGTCATCACCGACCGCGCCAC 480
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 GGGGAGGTCCAAGGGCTACGGATTCGTGACCTTCCGGGACCCAGACTCGGCGAGAATGGC 540
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 GTGCATGGACCCGTACCCGGTGATCGACGGGCGCCGCGCAAACTGTAACCTTGCCATCCT 600
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 AGGCCGTCCTGGGCCAGACATACCTTTCGCACCTTTAAGGCCGGTCATCCCATACAATGG 660
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 AGGTGTGGCGGTTCCAGGGGGCATGTATGTGCAAAGCCCAACATATCAGCAACCCCCCTA 720
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 CAACTATCCACAGGCATTTGTATATCCTTCTTATGGACCATCAACTTATGGGCCAGAATA 780
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 CATGTATCCTCAGAATGCATATGGTTCATATGTTGGGCAACAGTATGTTCCAGTATATGG 840
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 CGGTCCCAGGACAGTAGGCCCAGCAGTTTACCCATATGGGCAGTTTGGCCAACCTGTGCC 900
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 AGGTGATCAACCGTATTCACCTGGCTATGTACCAGGTCGCATTCTGCCGCTATCTAATCA 960
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 GAATGCTGCAAATGTTGTACGCATGTCAACAGTTCAGCAACAATATCCTCCAGGAGCTCC 1020
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 ACGCCCTCAGCAACAGCTCTTGATCCCTGCTCGTGCACAATTCACACCAAACAACATTTC 1080
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 GGAACAAACGTCGGGCTGACATAAGGATGCCAACAAGTACAAATTTGAGGTATCCTATAG 1140
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 TCTGCAGCAGGACTAAGAACAGCAGAACTGCTAATTGGGCGGCATGCTTCTTTTCTTGCA 1200
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 AACTGTCATCTTTTGCATTCTAAAGGTTCTCCTTATCCATGGTTACCTGATCCATATAAA 1260
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 ATGTGAATGTCAAGCTGCTCCGTTGGAAGGGGCAGGAAGGCGTGAGAGTTTCGAAGCCAC 1320
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 TCTTGCGCTGCTTCTGTCAAGTGTCTGTGCATTCCCCATCTCCTGCCAGGAATTCTGATA 1380
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 GCTGGTGGCCTGTACATGGACCAAAACTGGATGCCGGAAATGGAGTCCGGAATCCAGCCC 1440
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 TGTGTATAATAGCTCAAGTAGGGTCCAAAATCGTAGAGCTAGTCAATTCTTTCAAACGTT 1500
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 GCTGATGCGTCTGGTTACAGTTGTGTATAGCCCAATTCTCTCATCTTCGTCCTTCTCGTC 1560
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 ATCTCCAATGCATGTGATTGTGTTGCATTATGTACAGCATTAGGGCGTTGGGTCGCGTCC 1620
consensus_12270#1 ------------------------------------------------------------
consensus_12270#0 TCGGCTGGTTGTGTAAATTATTCATCCCAAAACTGTAAAACTGTTTATATCACTTTATAT 1680
consensus_12270#1 ----------------------------------GTAAAACTGTTTATATCACTTTATAT 26
**************************
consensus_12270#0 GCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAATCAACTGCTCCTACCT 1740
consensus_12270#1 GCAACGTGTAACTAAATAATGGCAGTTCCAATCCTAGAAAATAAAAAAAAAAAAAAAAAA 86
******************************************** ** *
consensus_12270#0 GTTAAA------------------------------- 1746
consensus_12270#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 123
***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||