cluster # 12276

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Oryza sativa
cluster # 12276 cluster # 12276 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12276#0 length = 230 sequences # 4
consensus_12276#1 length = 201 sequences # 1

consensus_12276#2 length = 197 sequences # 4
consensus_12276#3 length = 129 sequences # 1

consensusID : consensus_12276#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 230
fasta sequence

                              [TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF314252             [TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF316313             [TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGTTTTAATAAAAAAAAAAAAAAAAAA                                                                         ]
[-] EMBL CF316312             [ CAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTTTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATTTAAGTTTTAATAAAAAAAAAAAAAAAAAAA                                                                        ]
[-] EMBL CF313676             [ CAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATGTTTTACCATCTGATCCCGAAT GAAGAATAAAAAAA                                                                                        ]




>consensus_12276#0
TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGG
GTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGAT
CCCGAATCTAAGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12276#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [GACATGGATTGAAGGAGTAAAAAATGTTCTTTCAGCCATTTAAAGGAAAATAATGAGTGGTAACATTTCGTTAATTAATGTTGCAAAAGGGGTGTTTCCCCCAACCAAGCTTGTTACGACAACAGGGCACTCCAATATTTTCCCATTTGATCCCGAATTTAAGTAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF315302             [GACATGGATTGAAGGAGTAAAAAATGTTCTTTCAGCCATTTAAAGGAAAATAATGAGTGGTAACATTTCGTTAATTAATGTTGCAAAAGGGGTGTTTCCCCCAACCAAGCTTGTTACGACAACAGGGCACTCCAATATTTTCCCATTTGATCCCGAATTTAAGTAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12276#1
GACATGGATTGAAGGAGTAAAAAATGTTCTTTCAGCCATTTAAAGGAAAATAATGAGTGG
TAACATTTCGTTAATTAATGTTGCAAAAGGGGTGTTTCCCCCAACCAAGCTTGTTACGAC
AACAGGGCACTCCAATATTTTCCCATTTGATCCCGAATTTAAGTAAAACCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12276#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 197
fasta sequence

                              [TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG]

[+] EMBL CF302948             [TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG]
[+] EMBL CF315303             [TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAG  TAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]
[-] EMBL CF298658             [ CAGGTAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTTTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGA    AAGAAATAAAAAAAAATGAAAAAAAAAAAAATAAAAA                               ]
[+] EMBL AU225547             [                gccgctTGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGATCCCGAAcagcgg                                                                 ]




>consensus_12276#2
TCAGGCAGTTAAAGGGAGATGATGAGTGGTAACATCTCGCTAATTAATGTTGCGAGAGGG
GTGTCTGCCCCAACCAAGCCTGTTACGACAACAGGGCACTCCAATATTTTACCATCTGAT
CCCGAATCTAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAACCCCTGTCTTGCCG

consensusID : consensus_12276#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 129
fasta sequence

                              [ATGGTAAAATATTGGAGTGCCCTGTTGTCGTAACAGGCTTGGTTGGGGCAGACACCCCTCTCGCAACATTAATTAGCGAGATGTTACCACCTACATCCTCCTCCTCTTCTTCCCCTTGTCTCGTCCTCT]

[+] EMBL CA760769             [ATGGTAAAATATTGGAGTGCCCTGTTGTCGTAACAGGCTTGGTTGGGGCAGACACCCCTCTCGCAACATTAATTAGCGAGATGTTACCACCTACATCCTCCTCCTCTTCTTCCCCTTGTCTCGTCCTCT]




>consensus_12276#3
ATGGTAAAATATTGGAGTGCCCTGTTGTCGTAACAGGCTTGGTTGGGGCAGACACCCCTC
TCGCAACATTAATTAGCGAGATGTTACCACCTACATCCTCCTCCTCTTCTTCCCCTTGTC
TCGTCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12276#0      -------------------------------TCAGGCAGTTAAAGGGAGATGATGAGTGG 29
consensus_12276#2      -------------------------------TCAGGCAGTTAAAGGGAGATGATGAGTGG 29
consensus_12276#1      GACATGGATTGAAGGAGTAAAAAATGTTCTTTCAGCCATTTAAAGGAAAATAATGAGTGG 60
consensus_12276#3      --------------------------------------ATGGTAAAATATTGGAGTGCCC 22
                                                              *   *      *   * *   

consensus_12276#0      TAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGAC 89
consensus_12276#2      TAACATCTCGCTAATTAATGTTGCGAGAGGGGTGTCTGCCCCAACCAAGCCTGTTACGAC 89
consensus_12276#1      TAACATTTCGTTAATTAATGTTGCAAAAGGGGTGTTTCCCCCAACCAAGCTTGTTACGAC 120
consensus_12276#3      TGTTGTCGTAACAGGCTTGGTTGGGGCAGACACCCCTCTCGCAACATTAATTAGCGAGAT 82
                       *    *      *      ****    **       *  * ****      *     ** 

consensus_12276#0      AACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGTATAAAAAAAAAAAAAA 149
consensus_12276#2      AACAGGGCACTCCAATATTTTACCATCTGATCCCGAATCTAAGGAAAAAAAAAAAAAAAA 149
consensus_12276#1      AACAGGGCACTCCAATATTTTCCCATTTGATCCCGAATTTAAGTAAAACCAAAAAAAAAA 180
consensus_12276#3      GTTACCAC-CTACATCCTCCTCCTCTTCTTCCCCTTGTCTCGTCCTCT------------ 129
                          *   * ** **   *  * *  *     ***   * *                    

consensus_12276#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 209
consensus_12276#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG------------ 197
consensus_12276#1      AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 201
consensus_12276#3      ------------------------------------------------------------
                                                                                   

consensus_12276#0      AAAAAAAAAAAAAAAAAAAAA 230
consensus_12276#2      ---------------------
consensus_12276#1      ---------------------
consensus_12276#3      ---------------------