cluster # 1228

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Oryza sativa
cluster # 1228 cluster # 1228 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1228#0 length = 601 sequences # 1

consensus_1228#1 length = 411 sequences # 1

consensusID : consensus_1228#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [TAGTTTTACAATCATGCAAGTTTTCATTCGTGGAGCTGATGAATTGTTAACACTTGATCTTGAAAAGGATGATACCGTTCAAGATATTCGCGAATACGTTGGTGAAGAATACGATATTGATTTCGAAGATATTGTTTTGAGTTACAATGGAGCACCATTAAATGACGAACAAACAGTTGAACAATTCGGTCTTGTATCAGGCTCGACAATTGACGCAACTGTCAAATTATTTGGTGGTAAAGTTCATGGTTCATTAGCTCGTGCTGGTAAAGTCAAAGGTCAAACCGCCAAAAGTAGCCAAACAAGAAAAACGAAAGAAGAAAACCGGCCGTGCTNAACGTCGTCTTCAATACAAACAACGATTTGTTAACAAGGTCGCCAGTTTCGGTCGTAAACGTGGACCAAATTCAAATCAACCAGCTTCATCATAAGTCACCTAACAACATCCGTTGATATTGATGATGACAATGAGATTGAAAATATTTACCTATTCTCTCTCTAATTAACCACAATCTACTTTGACAATACACAACTATACTCACCAATACCATCACCTCCGGGGGGGGCCCGGTACCCATTCCCCCTATGTGGAGTCTATTAC]

[+] EMBL CA754290             [TAGTTTTACAATCATGCAAGTTTTCATTCGTGGAGCTGATGAATTGTTAACACTTGATCTTGAAAAGGATGATACCGTTCAAGATATTCGCGAATACGTTGGTGAAGAATACGATATTGATTTCGAAGATATTGTTTTGAGTTACAATGGAGCACCATTAAATGACGAACAAACAGTTGAACAATTCGGTCTTGTATCAGGCTCGACAATTGACGCAACTGTCAAATTATTTGGTGGTAAAGTTCATGGTTCATTAGCTCGTGCTGGTAAAGTCAAAGGTCAAACCGCCAAAAGTAGCCAAACAAGAAAAACGAAAGAAGAAAACCGGCCGTGCTNAACGTCGTCTTCAATACAAACAACGATTTGTTAACAAGGTCGCCAGTTTCGGTCGTAAACGTGGACCAAATTCAAATCAACCAGCTTCATCATAAGTCACCTAACAACATCCGTTGATATTGATGATGACAATGAGATTGAAAATATTTACCTATTCTCTCTCTAATTAACCACAATCTACTTTGACAATACACAACTATACTCACCAATACCATCACCTCCGGGGGGGGCCCGGTACCCATTCCCCCTATGTGGAGTCTATTAC]




>consensus_1228#0
TAGTTTTACAATCATGCAAGTTTTCATTCGTGGAGCTGATGAATTGTTAACACTTGATCT
TGAAAAGGATGATACCGTTCAAGATATTCGCGAATACGTTGGTGAAGAATACGATATTGA
TTTCGAAGATATTGTTTTGAGTTACAATGGAGCACCATTAAATGACGAACAAACAGTTGA
ACAATTCGGTCTTGTATCAGGCTCGACAATTGACGCAACTGTCAAATTATTTGGTGGTAA
AGTTCATGGTTCATTAGCTCGTGCTGGTAAAGTCAAAGGTCAAACCGCCAAAAGTAGCCA
AACAAGAAAAACGAAAGAAGAAAACCGGCCGTGCTNAACGTCGTCTTCAATACAAACAAC
GATTTGTTAACAAGGTCGCCAGTTTCGGTCGTAAACGTGGACCAAATTCAAATCAACCAG
CTTCATCATAAGTCACCTAACAACATCCGTTGATATTGATGATGACAATGAGATTGAAAA
TATTTACCTATTCTCTCTCTAATTAACCACAATCTACTTTGACAATACACAACTATACTC
ACCAATACCATCACCTCCGGGGGGGGCCCGGTACCCATTCCCCCTATGTGGAGTCTATTA
C

consensusID : consensus_1228#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [ACCGTCGAACAATTCGGTCTTGTTTCTGGTTCAACACTCGATGCAACCGTTAAATTATTTGGTGGTAAAGTCCACGGTTCATTAGCTCGTGCTGGTAAAGTTAAAGGTCAAACACCAAAGGTTGCTAAACAAGAAAAACGTAAGAAGAAAACCGGTCGTGCTAAACGACGTCTTCAATACAAACAACGATTCGTCAACAAGGTTGCCTCATTCGGTCGTAAACGTGGACCAAACTCGAATCAACCAGCATCATCATAAAATCATGAAAAAAAACTTCAAACGAAAACAATGCCTTACAGTTACCGATATTCATTTGTATGAACACAAGGATTGTTTGTTTTTGTTTTGTGTTGTTTTTTGCTTCAAATAAAAACTAAATTCTATCACAAGAAAAAAAAAACAAAAAAAAAA]

[+] EMBL CA756059             [ACCGTCGAACAATTCGGTCTTGTTTCTGGTTCAACACTCGATGCAACCGTTAAATTATTTGGTGGTAAAGTCCACGGTTCATTAGCTCGTGCTGGTAAAGTTAAAGGTCAAACACCAAAGGTTGCTAAACAAGAAAAACGTAAGAAGAAAACCGGTCGTGCTAAACGACGTCTTCAATACAAACAACGATTCGTCAACAAGGTTGCCTCATTCGGTCGTAAACGTGGACCAAACTCGAATCAACCAGCATCATCATAAAATCATGAAAAAAAACTTCAAACGAAAACAATGCCTTACAGTTACCGATATTCATTTGTATGAACACAAGGATTGTTTGTTTTTGTTTTGTGTTGTTTTTTGCTTCAAATAAAAACTAAATTCTATCACAAGAAAAAAAAAACAAAAAAAAAA]




>consensus_1228#1
ACCGTCGAACAATTCGGTCTTGTTTCTGGTTCAACACTCGATGCAACCGTTAAATTATTT
GGTGGTAAAGTCCACGGTTCATTAGCTCGTGCTGGTAAAGTTAAAGGTCAAACACCAAAG
GTTGCTAAACAAGAAAAACGTAAGAAGAAAACCGGTCGTGCTAAACGACGTCTTCAATAC
AAACAACGATTCGTCAACAAGGTTGCCTCATTCGGTCGTAAACGTGGACCAAACTCGAAT
CAACCAGCATCATCATAAAATCATGAAAAAAAACTTCAAACGAAAACAATGCCTTACAGT
TACCGATATTCATTTGTATGAACACAAGGATTGTTTGTTTTTGTTTTGTGTTGTTTTTTG
CTTCAAATAAAAACTAAATTCTATCACAAGAAAAAAAAAACAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1228#0      TAGTTTTACAATCATGCAAGTTTTCATTCGTGGAGCTGATGAATTGTTAACACTTGATCT 60
consensus_1228#1      ------------------------------------------------------------
                                                                                  

consensus_1228#0      TGAAAAGGATGATACCGTTCAAGATATTCGCGAATACGTTGGTGAAGAATACGATATTGA 120
consensus_1228#1      ------------------------------------------------------------
                                                                                  

consensus_1228#0      TTTCGAAGATATTGTTTTGAGTTACAATGGAGCACCATTAAATGACGAACAAACAGTTGA 180
consensus_1228#1      ----------------------------------------------------ACCGTCGA 8
                                                                          ** ** **

consensus_1228#0      ACAATTCGGTCTTGTATCAGGCTCGACAATTGACGCAACTGTCAAATTATTTGGTGGTAA 240
consensus_1228#1      ACAATTCGGTCTTGTTTCTGGTTCAACACTCGATGCAACCGTTAAATTATTTGGTGGTAA 68
                      *************** ** ** ** *** * ** ***** ** *****************

consensus_1228#0      AGTTCATGGTTCATTAGCTCGTGCTGGTAAAGTCAAAGGTCAAACCGCCAAAAGTAGCCA 300
consensus_1228#1      AGTCCACGGTTCATTAGCTCGTGCTGGTAAAGTTAAAGGTCAAAC-ACCAAAGGTTGCTA 127
                      *** ** ************************** ***********  ***** ** ** *

consensus_1228#0      AACAAGAAAAACGAAAGAAGAAAACCGGCCGTGCTNAACGTCGTCTTCAATACAAACAAC 360
consensus_1228#1      AACAAGAAAAACGTAAGAAGAAAACCGGTCGTGCTAAACGACGTCTTCAATACAAACAAC 187
                      ************* ************** ****** **** *******************

consensus_1228#0      GATTTGTTAACAAGGTCGCCAGTTTCGGTCGTAAACGTGGACCAAATTCAAATCAACCAG 420
consensus_1228#1      GATTCGTCAACAAGGTTGCCTCATTCGGTCGTAAACGTGGACCAAACTCGAATCAACCAG 247
                      **** ** ******** ***   *********************** ** **********

consensus_1228#0      CTTCATCATAAGTCACCTAACAACATCCGTTGATATTGATGATGACAATGAGATTGAAAA 480
consensus_1228#1      CATCATCATAAAAT-CATGAAAAAAAACTTCAA-----ACGAAAACAATGCCTT-----A 296
                      * *********    * * * ** *  * *  *     * **  ******   *     *

consensus_1228#0      TATTTACCTATTCTCTCTCTAATTAACCACAATCTACTTTGACAATACACAACTATACTC 540
consensus_1228#1      CAGTTACCGATATTCATTTGTATGAAC-ACAA---------GGATTGTTTGTTTTTGTTT 346
                       * ***** **  **  *   ** *** ****           * *       * *  * 

consensus_1228#0      ACCAATACCATCACCTCCGGGGGGGGCCCGGTACCCATTCCCCCTATGTGGAGTCTATTA 600
consensus_1228#1      TGTGTTGTTTTTTGCTTCAAATAAAAACTAAATTCTATCACAAGAAAAAAAAAACAAAAA 406
                           *    *   ** *         *      * **  *    *     *  * *  *

consensus_1228#0      C---- 601
consensus_1228#1      AAAAA 411