cluster # 12280

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Oryza sativa
cluster # 12280 cluster # 12280 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12280#0 length = 2532 sequences # 9

consensus_12280#1 length = 671 sequences # 1

consensusID : consensus_12280#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2532
fasta sequence

                              [CCCTAGCTCCCGCCGCCGCCGCCGCCGCGCTGTTCCGGGATGGCCGGCGCCGCCGCGCTCCGGCGATCCGCGCGCCGTGTCGTCCTGCCAGGCGCCTACGCCTTGTCCCGGGCGCTACAGCACCCTGAGCGCCTCCTCTCCTCCCAGGCTTCGCCGGACCGCGGCGGGGTGCTGGGTTCGGAGCTTGGGCTGTATCCCCCGGAGAGGGTCAGGAACTTCTCCATCATCGCGCACGTCGACCACGGCAAGTCCACGCTCGCCGACCGGTTGCTGGAGCTCACCGGCACCATCAAGAAGGGCCATGGCCAACCTCAGTACCTCGACAAGTTACAGGTAGAGAGAGAGAGGGGAATCACAGTCAAAGCACAAACAGCAACTATGTTCTACAGACATGCTAACAACCAACTTCCTGCATCTGATCAGCCAGATGCTCCAAGCTATTTGCTTAACTTGATTGATACTCCTGAGCATGTGGATTTCAGCTACGAAGTATCCAGGTCGCTTGCAGCTTGTCAGGGTGCTCTTTTAGTAGTTAATGCAGCCCAAGGTGTCCAAGCACAAACAATTGCAAACTTCTACCTTGCATTTGAGTCGAATCTAAGCATCATTCCTGTTATTAATAAGATTGATCAGCCTACCGCTGATCCAGATAATGTAAAGGCTCAACTGAAGAGGTTATTTGACATTGATCCAAGTGAAGCTCTGCTAACTTCAGCTAAAACTGGTCAGGGCCTTAGCCAGGTCTTGCCTGCTGTTATTGAGCGGATTCCTTCCCCACCTGGAAAATGTGATTCACCTGTACGCATGCTTCTCTTAGATTCATACTATGATGAGTATAAAGGGGTGATATGCCATGTTGCTGTTGTGGATGGTGCTCTCCACAAAGGAGATAAGATTGCATCTGCCGCAACTGGTCGCACATATGAAGTCCTTGATGTGGGCATTATGCATCCAGAGCTTACTCCTAC-CGGTGTGCTTTACACTGGACAAGTTGGATATGTCATAAGCGGAATGCGTTCAACTAAAGAAGCACGAATTGGTGATACTCTTCATCAAGCAAAGAGTATTGTCGAACCACTTCCTGGTTTCAAGCCTGCTAGACACATGGTCTTCTCTGGTCTATACCCAGCTGATGGCTCTGACTCTGACGCTCTTAGCCATGCAATTGAAAAACTAACATGTAACGATGCGAGTGTGTCTGTTACAAAAGAGACAAGCACTGCACTTGGCATGGGCTTCAGATGTGGCTTTCTAGGATTACTACACATGGATGTATTTCATCAGCGGCTAGAACAAGAACATGGAGCTCAAGTCATATCGACAATACCGACAGTGCCATATATCTTTGAGTATGGTGATGGAAGCAAAGTGCAAGTCGAGAACCCTGCAGCTTTGGCTTCAAATCCTGGAAAGCGTATAGCAGCTTGTTGGGAACCAACAGTCATTGCAACTATTATTATTCCTAGTGAGTATGTTGGGCCAGTAATTATGCTTTGTTCAGAGAGGAGGGGCGAGCAGCAAGAATATACATTCA-TTGATG-CCCAAAGGGC-TTTGTTGAAGTA-CCGATTA-CCATT--GAGGGAAATCATT-GTGGA-TTTCTACAAT-GAACT-GAAAAG-CATAACATCT-GGATATG-CTA-CTTTT-GATTATG-AAGATTCTGAGTACCAACAGTCTGATCTTGTTAAGATGGATATTTTACTTAATGGTCAGCCTGTTGATGCTATGGCAA-CAATAGTCCACAACCAGAAAGCT-CAGAGAGTT-GGACGAGAATTAGTGGATAAACTCAAGAAATTCATAGAACGGCAAATGTTTGAGATCACTATA-CAAGCCGCAGTTGGTTCAAAGGTTAT-CGCAAGGGAAACTCTGTCAGCAATGAGAAAGAACG-TTCTGG-CCAAGTGCTATGGTGGTGATATTACTCGCAAAAAGAAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGATATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGCTTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGAAACACAAACAGCATGTTCTGGACTTCTAGTCATCTTCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGTTTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGCAACATATTTTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTCGGTGATGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCACAGCCATTTAGCTGAATCTCATTTCTTTGTTCAAATTATGTTAAGAAC-TTTTTGGGAGGAAAATATTCCAGAGATAGTAA-GTCCTTTTTTTTTGGGCAATGTTAAAAAAAAAGGTATTTCCCTTTGAGCTTCTCTAGTTCTGTTTAATGCAATTTTGTAATTTTGTAACTCTTCTGCTGCATGGTGTAAACTT]

[+] EMBL AK103630             [CCCTAGCTCCCGCCGCCGCCGCCGCCGCGCTGTTCCGGGATGGCCGGCGCCGCCGCGCTCCGGCGATCCGCGCGCCGTGTCGTCCTGCCAGGCGCCTACGCCTTGTCCCGGGCGCTACAGCACCCTGAGCGCCTCCTCTCCTCCCAGGCTTCGCCGGACCGCGGCGGGGTGCTGGGTTCGGAGCTTGGGCTGTATCCCCCGGAGAGGGTCAGGAACTTCTCCATCATCGCGCACGTCGACCACGGCAAGTCCACGCTCGCCGACCGGTTGCTGGAGCTCACCGGCACCATCAAGAAGGGCCATGGCCAACCTCAGTACCTCGACAAGTTACAGGTAGAGAGAGAGAGGGGAATCACAGTCAAAGCACAAACAGCAACTATGTTCTACAGACATGCTAACAACCAACTTCCTGCATCTGATCAGCCAGATGCTCCAAGCTATTTGCTTAACTTGATTGATACTCCTGAGCATGTGGATTTCAGCTACGAAGTATCCAGGTCGCTTGCAGCTTGTCAGGGTGCTCTTTTAGTAGTTAATGCAGCCCAAGGTGTCCAAGCACAAACAATTGCAAACTTCTACCTTGCATTTGAGTCGAATCTAAGCATCATTCCTGTTATTAATAAGATTGATCAGCCTACCGCTGATCCAGATAATGTAAAGGCTCAACTGAAGAGGTTATTTGACATTGATCCAAGTGAAGCTCTGCTAACTTCAGCTAAAACTGGTCAGGGCCTTAGCCAGGTCTTGCCTGCTGTTATTGAGCGGATTCCTTCCCCACCTGGAAAATGTGATTCACCTGTACGCATGCTTCTCTTAGATTCATACTATGATGAGTATAAAGGGGTGATATGCCATGTTGCTGTTGTGGATGGTGCTCTCCACAAAGGAGATAAGATTGCATCTGCCGCAACTGGTCGCACATATGAAGTCCTTGATGTGGGCATTATGCATCCAGAGCTTACTCCTAC CGGTGTGCTTTACACTGGACAAGTTGGATATGTCATAAGCGGAATGCGTTCAACTAAAGAAGCACGAATTGGTGATACTCTTCATCAAGCAAAGAGTATTGTCGAACCACTTCCTGGTTTCAAGCCTGCTAGACACATGGTCTTCTCTGGTCTATACCCAGCTGATGGCTCTGACTCTGACGCTCTTAGCCATGCAATTGAAAAACTAACATGTAACGATGCGAGTGTGTCTGTTACAAAAGAGACAAGCACTGCACTTGGCATGGGCTTCAGATGTGGCTTTCTAGGATTACTACACATGGATGTATTTCATCAGCGGCTAGAACAAGAACATGGAGCTCAAGTCATATCGACAATACCGACAGTGCCATATATCTTTGAGTATGGTGATGGAAGCAAAGTGCAAGTCGAGAACCCTGCAGCTTTGGCTTCAAATCCTGGAAAGCGTATAGCAGCTTGTTGGGAACCAACAGTCATTGCAACTGTTATTATTCCTAGTGAGTATGTTGGGCCAGTAATTATGCTTTGTTCAGAGAGGAGGGGCGAGCAGCAAGAATATACATTCA TTGATG CCCAAAGGGC TTTGTTGAAGTA CCGATTA CCATT  GAGGGAAATCATT GTGGA TTTCTACAAT GAACT GAAAAG CATAACATCT GGATATG CTA CTTTT GATTATG AAGATTCTGAGTACCAACAGTCTGATCTTGTTAAGATGGATATTTTACTTAATGGTCAGCCTGTTGATGCTATGGCAA CAATAGTCCACAACCAGAAAGCT CAGAGAGTT GGACGAGAATTAGTGGATAAACTCAAGAAATTCATAGAACGGCAAATGTTTGAGATCACTATA CAAGCCGCAGTTGGTTCAAAGGTTAT CGCAAGGGAAACTCTGTCAGCAATGAGAAAGAACG TTCTGG CCAAGTGCTATGGTGGTGATATTACTCGCAAAAAGAAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGATATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGCTTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGAAACACAAACAGCATGTTCTGGACTTCTAGTCATCTTCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGTTTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGCAACATATTTTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTCGGTGATGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCACAGCCATTTAGCTGAATCTCATTTCTTTGTTCAAATTATGTTAAGAAC T                                                                                                                                                 ]
[+] EMBL CF323078             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CAAACTTCTACCTTGCATTTGAGTCGAATCTAAGCATCATTCCTGTTATTAATAAGATTGATCAGCCTACCGCTGATCCAGATAATGTAAAGGCTCAACTGAAGAGGTTATTTGACATTGATCCAAGTGAAGCTCTGCTAACTTCAGCTAAAACTGGTCAGGGCCTTAGCCAGGTCTTGCCTGCTGTTATTGAGCGGATTCCTTCCCCACCTGGAAAATGTGATTCACCTGTACGCATGCTTCTCTTAGATTCATACTATGATGAGTATAAAGGGGTGATATGCCATGTTGCTGTTGTGGATGGTGCTCTCCACAAAGGAGATAAGATTGCATCTGCCGCAACTGGTCGCACATATGAAGTCCTTGATGTGGGCATTATGCATCCAGAGCTTACTCCTACNCGGTGTGCTTTACACTGGACAAGTTGGATATGTCATAAGCGGAATGCGTTCAACTAAAGAAGCACGAATTGGTGATACTCTTCATCAAGCAAAGAGTATTGTCGAACCACTTCCTGGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA766077             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTGGATGGTGCTCTCCACAAAGGAGATAAGATTGCATCTGCCGCAACTGGTCGCACATATGAAGTCCTTGATGTGGGCATTATGCATCAAGAGCTTACTCCTAC CGGTGTGCTTTACACTGGACAAGTTGGATATGTCATAAGCGGAATGCGTTCAACTAAAGAAGCACGAATTGGTGATACTCTTCATCAAGCAAAGAGTATTGTCGAACCACTTCCTGGTTTCAAGCCTGCTAGACACATGGTCTTCTCTGGTCTATACCCAGCTGATGGCTCTGACTTTGACGCTCTTAGCCATGCAATTGAAAAACTAACATGTAACGATGCGAGTGTGTCTGTTACAAAAGAGACAAGCACTGCACTTGGCATGGGCTTCAGATGTGGCTTTCTAGGATTACTACACATGGATGTATTTCATCAGCGGCTAGAACAAGAACATGGAGCTCAAGTCATATCGACAATACCGACAGTGCCATATATCTTTGAGTATGGTGATGGAAGCAAAGTGCAAGTCGAGAACCCTGCAGCTTTGGCTTCAAATCCTGGAAAGCGTATAGCAGCTTGTTGGGAACCAACAGTCATTGCAACTATTATTATTCCT    AGTATGNTGGGCCAGTAATTATGCTTTGNTCAGAGAGGAGGGGCGAGCAGCAAGAATATACATTCATTTGATGNCCCAAAGGGCNTTTGNTGAAGTACCCGATTANCCATTGGGGGGGAAATCATTGGGGGATTTTCTACAATGGAACTGGAAAAGCCTTAACATCTNGGATATGCCTACCTTTTGGATTATGAAAAATTCTGGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU032084             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCAAGTCGAGAACCCTGCAGCTTTGGCTTCAAATCCTGGAAAGCGTATAGCAGCTTGTTGGGAACCAACAGTCATTGCAACTATTATTATTCCTAGTGAGTATGTTGGGCCAGTAATTATGCTTTGTTCAGAGAGGAGGGGCGAGCAGCAAGAATATACATTCA TTGATG CCCAAAGGGC TTTGTTGAAGTA CCGATTA CCATT  GAGGGAAATCATT GTGGA TTTCTACAAT GAACT GAAAAG CATAACATCT GGATATG CTA CTTTT GATTATG AAGATTCTGAGTACCAACAGTCTGATCTTGTTAAGATGGATATTTTACTTAATGGTCAGCCTGTTGATGCTATGGCAACCAATAGTCCACNACCAGAAAGCTCCAGAGAGTTGGGACGAGAATAAGTGGATAANCTCc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB663215             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AAGTCGAGAACCCTGCAGCTTTGGCTTCAAATCCTGGAAAGCGTATAGCAGCTTGTTGGGAACCAACAGTCATTGCAACTATTATTATTCCT    AGTATGTTGGGCCAGTAATTATGCTTTGTTCAGAGAGGAGGGGCGAGCAGCAAGAATATACATTCA TTGATG CCCAAAGGGC TTTGTTGAAGTA CCGATTA CCATT  GAGGGAAATCATT GTGGA TTTCTACAAT GAACT GAAAAG CATAACATCT GGATATG CTA CTTTT GATTATG AAGATTCTGAGTACCAACAGTCTGATCTTGTTAAGATGGATATTTTACTTAATGGTCAGCCTGTTGATGCTATGGCAA CAATAGTCCACAACCAGAAAGCT CAGAGAGTT GGACGAGAATTAGTGGATAAACTCAAGAAATTCATAGAACGGCAAATGTTTGAGATCACTATA CAAGCCGCAGTTGGTTCAAAGGTTAT CGCAAGGGAAACTCTGTCAGCAATGAGAAAGAACG TTCTGG CCAAGTGCTATGGTGGTGATATTACTCGCAAAAAGAAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGATATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGCTTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGAAACACAAACAGCATGTTCTGGACTTCTAGTCATCTTCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGTTTCTTAATGATAAGAGGAGAACAAGCACCATTTTGCCATCTTTTGCTGTGGCAACA                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA766401             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ggggcACCCGAAAGCT AGGAGAGTT GGACGAGAATT GTGGAT AACT AAGAAATT ATAGAACGGCAAATGTTTGAGATCACTATA CAAGCCGCAGTTGGTTCAAAGGTTAT CGCAAGGGAAACTCTGTCAGCAATGAGAAAGAACG TTCTGG CCAAGTGCTATGGTGGTGATATTACTCGCAAAAAGAAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGATATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGCTTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGAAACACAAACAGCATGTTCTGGACTTCTAGTCATCTTCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGTTTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGCAACATATTTTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTCGGTGATGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCACAGCCATTTAGCTGAATCTCATTTCTTTGTTCAAATTATGGTAAGAACTTTTTTNGGAGGAAAATATTCCAGAGATAGTAANGTCCCTTTTTTTT                                                                                                    ]
[-] EMBL CA760039             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGAGAATTAGTGGATAAACTCAAGAAATTCATAGAACGGCAAATGTTTGAGATCACTATA CAAGCCGCAGTTGGTTCAAAGGTTAT CGCAAGGGAAACTCTGTCAGCAATGAGAAAGAACG TTCTGG CCAAGTGCTATGGTGGTGATATTACTCGCAAAGAGAAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGATATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGCTTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGAAACACAAACAGCATGTTCTGGACTTCTAGTCATCTTCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGTTTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGCAACATATTTTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTCGGTGATGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCACAGCCATTTAGCTGAATCTCATTTCTTTGTTCAAATTATGTTAAGAAC TTTTTGGGAGGAAAATATTCCAGAGATAGTAA GTCCTTTTTTTTTGGGCAATGTTAAAAAAAAA                                                                                 ]
[+] EMBL CB000451             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAGAATTAGTGGATAAACTCAAGAAATTCATACATCGGCAAATGTTTGAGATCACTATA CAAGCCGCAGTTGGTTCAAAGGTTAT CGCAAGGGAAACTCTGTCAGCAATGAGAAAGAACG TTCTGG CCAAGTGCTATGGTGGTGATATTACTCGCAAAAAGAAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGATATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGCTTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGAAACACAAACAGCATGTTCTGGACTTCTAGTCATCTTCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGTTTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGCAACATATTTTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTCGGTGATGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCACAGCCATTTAGCTGAATCTCATTTCTTTGTTCAAATTATGTTAAGAAC TTTTTGGGAGGAAAATATTCCAGAGATAGTAA GTCCTTTTTTTTTGGGCAATGTTAAATAATTGGGTATTTCCCTTTGAGCTTCTCTAGTTCTGTTTAATGCAATTTTGTAATTTTGTAACTCTTCTGCTGCATGGTGTAAACTT]
[+] EMBL AU162490             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAGATCACTTTACCAAGCCNCATTTGGTTCAAAGGTTATCCGCNAGGGAAACTCTGTCAGCAATGNGAAAGANCGTTTCTGGCCCAAGTGCTATGGTGGTGATATTACTCGCAAAAAGAAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGATATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGCTTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGAAACACAAACAGCATGTTCTGGACTTCTAGTCATCTTCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGTTTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGCAACATATTTTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTCGGTGATGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCACAGCCATTTAGCTGAATCTCATTTCTTTGTTCAAATTATGTTAAGAAC TTTTTGGGAGGAAAATATTCCAGAGATAGTAA GTCC TTTTTTTTGGGCAATGTTAAAAAAAAAaaa                                                                              ]




>consensus_12280#0
CCCTAGCTCCCGCCGCCGCCGCCGCCGCGCTGTTCCGGGATGGCCGGCGCCGCCGCGCTC
CGGCGATCCGCGCGCCGTGTCGTCCTGCCAGGCGCCTACGCCTTGTCCCGGGCGCTACAG
CACCCTGAGCGCCTCCTCTCCTCCCAGGCTTCGCCGGACCGCGGCGGGGTGCTGGGTTCG
GAGCTTGGGCTGTATCCCCCGGAGAGGGTCAGGAACTTCTCCATCATCGCGCACGTCGAC
CACGGCAAGTCCACGCTCGCCGACCGGTTGCTGGAGCTCACCGGCACCATCAAGAAGGGC
CATGGCCAACCTCAGTACCTCGACAAGTTACAGGTAGAGAGAGAGAGGGGAATCACAGTC
AAAGCACAAACAGCAACTATGTTCTACAGACATGCTAACAACCAACTTCCTGCATCTGAT
CAGCCAGATGCTCCAAGCTATTTGCTTAACTTGATTGATACTCCTGAGCATGTGGATTTC
AGCTACGAAGTATCCAGGTCGCTTGCAGCTTGTCAGGGTGCTCTTTTAGTAGTTAATGCA
GCCCAAGGTGTCCAAGCACAAACAATTGCAAACTTCTACCTTGCATTTGAGTCGAATCTA
AGCATCATTCCTGTTATTAATAAGATTGATCAGCCTACCGCTGATCCAGATAATGTAAAG
GCTCAACTGAAGAGGTTATTTGACATTGATCCAAGTGAAGCTCTGCTAACTTCAGCTAAA
ACTGGTCAGGGCCTTAGCCAGGTCTTGCCTGCTGTTATTGAGCGGATTCCTTCCCCACCT
GGAAAATGTGATTCACCTGTACGCATGCTTCTCTTAGATTCATACTATGATGAGTATAAA
GGGGTGATATGCCATGTTGCTGTTGTGGATGGTGCTCTCCACAAAGGAGATAAGATTGCA
TCTGCCGCAACTGGTCGCACATATGAAGTCCTTGATGTGGGCATTATGCATCCAGAGCTT
ACTCCTACCGGTGTGCTTTACACTGGACAAGTTGGATATGTCATAAGCGGAATGCGTTCA
ACTAAAGAAGCACGAATTGGTGATACTCTTCATCAAGCAAAGAGTATTGTCGAACCACTT
CCTGGTTTCAAGCCTGCTAGACACATGGTCTTCTCTGGTCTATACCCAGCTGATGGCTCT
GACTCTGACGCTCTTAGCCATGCAATTGAAAAACTAACATGTAACGATGCGAGTGTGTCT
GTTACAAAAGAGACAAGCACTGCACTTGGCATGGGCTTCAGATGTGGCTTTCTAGGATTA
CTACACATGGATGTATTTCATCAGCGGCTAGAACAAGAACATGGAGCTCAAGTCATATCG
ACAATACCGACAGTGCCATATATCTTTGAGTATGGTGATGGAAGCAAAGTGCAAGTCGAG
AACCCTGCAGCTTTGGCTTCAAATCCTGGAAAGCGTATAGCAGCTTGTTGGGAACCAACA
GTCATTGCAACTATTATTATTCCTAGTGAGTATGTTGGGCCAGTAATTATGCTTTGTTCA
GAGAGGAGGGGCGAGCAGCAAGAATATACATTCATTGATGCCCAAAGGGCTTTGTTGAAG
TACCGATTACCATTGAGGGAAATCATTGTGGATTTCTACAATGAACTGAAAAGCATAACA
TCTGGATATGCTACTTTTGATTATGAAGATTCTGAGTACCAACAGTCTGATCTTGTTAAG
ATGGATATTTTACTTAATGGTCAGCCTGTTGATGCTATGGCAACAATAGTCCACAACCAG
AAAGCTCAGAGAGTTGGACGAGAATTAGTGGATAAACTCAAGAAATTCATAGAACGGCAA
ATGTTTGAGATCACTATACAAGCCGCAGTTGGTTCAAAGGTTATCGCAAGGGAAACTCTG
TCAGCAATGAGAAAGAACGTTCTGGCCAAGTGCTATGGTGGTGATATTACTCGCAAAAAG
AAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGAT
ATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGC
TTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGAAACACAAACAGCATGT
TCTGGACTTCTAGTCATCTTCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGT
TTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGCAACATATT
TTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTC
GGTGATGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCAC
AGCCATTTAGCTGAATCTCATTTCTTTGTTCAAATTATGTTAAGAACTTTTTGGGAGGAA
AATATTCCAGAGATAGTAAGTCCTTTTTTTTTGGGCAATGTTAAAAAAAAAGGTATTTCC
CTTTGAGCTTCTCTAGTTCTGTTTAATGCAATTTTGTAATTTTGTAACTCTTCTGCTGCA
TGGTGTAAACTT

consensusID : consensus_12280#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [TCACTATACAAGCCGCAGTTGGTTCAAAGGTTATCGCAAGGGAAACTCTGTCAGCAATGAGAAAGAACGTTCTGGCCAAGTGCTATGGTGGTGATATTACTCGCAAAAAGAAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGATATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGCTTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGGAACACAAACAGCATGTTCTGGACTTCTAGTCATCTCCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGTTTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGCAACATATTTTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTCGGTGATGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCACAGCCATTTAGCTGAATCTCATTTCTTTGTTCAAATTATGTTAAGAACTTTTTGGGAGGAAAATATTCCAGAGATAGTAAGTCCTTTTTTTTTGGGCAATGGTAAATAATTGGGTATTTCCCTTTGAGCTTCAAAAAAAAAA]

[+] EMBL CB096683             [TCACTATACAAGCCGCAGTTGGTTCAAAGGTTATCGCAAGGGAAACTCTGTCAGCAATGAGAAAGAACGTTCTGGCCAAGTGCTATGGTGGTGATATTACTCGCAAAAAGAAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGATATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGCTTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGGAACACAAACAGCATGTTCTGGACTTCTAGTCATCTCCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGTTTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGCAACATATTTTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTCGGTGATGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCACAGCCATTTAGCTGAATCTCATTTCTTTGTTCAAATTATGTTAAGAACTTTTTGGGAGGAAAATATTCCAGAGATAGTAAGTCCTTTTTTTTTGGGCAATGGTAAATAATTGGGTATTTCCCTTTGAGCTTCAAAAAAAAAA]




>consensus_12280#1
TCACTATACAAGCCGCAGTTGGTTCAAAGGTTATCGCAAGGGAAACTCTGTCAGCAATGA
GAAAGAACGTTCTGGCCAAGTGCTATGGTGGTGATATTACTCGCAAAAAGAAGTTGCTAG
AGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGATATTCCTCAAG
AAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGCTTAGTGCTGT
AGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGGAACACAAACAGCATGTTCTGGACTTC
TAGTCATCTCCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGTTTCTTAATGA
TAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGCAACATATTTTCATGTTGA
GAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTCGGTGATGCCT
GCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCACAGCCATTTAG
CTGAATCTCATTTCTTTGTTCAAATTATGTTAAGAACTTTTTGGGAGGAAAATATTCCAG
AGATAGTAAGTCCTTTTTTTTTGGGCAATGGTAAATAATTGGGTATTTCCCTTTGAGCTT
CAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12280#0      CCCTAGCTCCCGCCGCCGCCGCCGCCGCGCTGTTCCGGGATGGCCGGCGCCGCCGCGCTC 60
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      CGGCGATCCGCGCGCCGTGTCGTCCTGCCAGGCGCCTACGCCTTGTCCCGGGCGCTACAG 120
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      CACCCTGAGCGCCTCCTCTCCTCCCAGGCTTCGCCGGACCGCGGCGGGGTGCTGGGTTCG 180
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      GAGCTTGGGCTGTATCCCCCGGAGAGGGTCAGGAACTTCTCCATCATCGCGCACGTCGAC 240
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      CACGGCAAGTCCACGCTCGCCGACCGGTTGCTGGAGCTCACCGGCACCATCAAGAAGGGC 300
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      CATGGCCAACCTCAGTACCTCGACAAGTTACAGGTAGAGAGAGAGAGGGGAATCACAGTC 360
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      AAAGCACAAACAGCAACTATGTTCTACAGACATGCTAACAACCAACTTCCTGCATCTGAT 420
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      CAGCCAGATGCTCCAAGCTATTTGCTTAACTTGATTGATACTCCTGAGCATGTGGATTTC 480
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      AGCTACGAAGTATCCAGGTCGCTTGCAGCTTGTCAGGGTGCTCTTTTAGTAGTTAATGCA 540
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      GCCCAAGGTGTCCAAGCACAAACAATTGCAAACTTCTACCTTGCATTTGAGTCGAATCTA 600
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      AGCATCATTCCTGTTATTAATAAGATTGATCAGCCTACCGCTGATCCAGATAATGTAAAG 660
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      GCTCAACTGAAGAGGTTATTTGACATTGATCCAAGTGAAGCTCTGCTAACTTCAGCTAAA 720
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      ACTGGTCAGGGCCTTAGCCAGGTCTTGCCTGCTGTTATTGAGCGGATTCCTTCCCCACCT 780
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      GGAAAATGTGATTCACCTGTACGCATGCTTCTCTTAGATTCATACTATGATGAGTATAAA 840
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      GGGGTGATATGCCATGTTGCTGTTGTGGATGGTGCTCTCCACAAAGGAGATAAGATTGCA 900
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      TCTGCCGCAACTGGTCGCACATATGAAGTCCTTGATGTGGGCATTATGCATCCAGAGCTT 960
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      ACTCCTACCGGTGTGCTTTACACTGGACAAGTTGGATATGTCATAAGCGGAATGCGTTCA 1020
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      ACTAAAGAAGCACGAATTGGTGATACTCTTCATCAAGCAAAGAGTATTGTCGAACCACTT 1080
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      CCTGGTTTCAAGCCTGCTAGACACATGGTCTTCTCTGGTCTATACCCAGCTGATGGCTCT 1140
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      GACTCTGACGCTCTTAGCCATGCAATTGAAAAACTAACATGTAACGATGCGAGTGTGTCT 1200
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      GTTACAAAAGAGACAAGCACTGCACTTGGCATGGGCTTCAGATGTGGCTTTCTAGGATTA 1260
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      CTACACATGGATGTATTTCATCAGCGGCTAGAACAAGAACATGGAGCTCAAGTCATATCG 1320
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      ACAATACCGACAGTGCCATATATCTTTGAGTATGGTGATGGAAGCAAAGTGCAAGTCGAG 1380
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      AACCCTGCAGCTTTGGCTTCAAATCCTGGAAAGCGTATAGCAGCTTGTTGGGAACCAACA 1440
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      GTCATTGCAACTATTATTATTCCTAGTGAGTATGTTGGGCCAGTAATTATGCTTTGTTCA 1500
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      GAGAGGAGGGGCGAGCAGCAAGAATATACATTCATTGATGCCCAAAGGGCTTTGTTGAAG 1560
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      TACCGATTACCATTGAGGGAAATCATTGTGGATTTCTACAATGAACTGAAAAGCATAACA 1620
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      TCTGGATATGCTACTTTTGATTATGAAGATTCTGAGTACCAACAGTCTGATCTTGTTAAG 1680
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      ATGGATATTTTACTTAATGGTCAGCCTGTTGATGCTATGGCAACAATAGTCCACAACCAG 1740
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      AAAGCTCAGAGAGTTGGACGAGAATTAGTGGATAAACTCAAGAAATTCATAGAACGGCAA 1800
consensus_12280#1      ------------------------------------------------------------
                                                                                   

consensus_12280#0      ATGTTTGAGATCACTATACAAGCCGCAGTTGGTTCAAAGGTTATCGCAAGGGAAACTCTG 1860
consensus_12280#1      ----------TCACTATACAAGCCGCAGTTGGTTCAAAGGTTATCGCAAGGGAAACTCTG 50
                                 **************************************************

consensus_12280#0      TCAGCAATGAGAAAGAACGTTCTGGCCAAGTGCTATGGTGGTGATATTACTCGCAAAAAG 1920
consensus_12280#1      TCAGCAATGAGAAAGAACGTTCTGGCCAAGTGCTATGGTGGTGATATTACTCGCAAAAAG 110
                       ************************************************************

consensus_12280#0      AAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGAT 1980
consensus_12280#1      AAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGTCCGTTGAT 170
                       ************************************************************

consensus_12280#0      ATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGC 2040
consensus_12280#1      ATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGC 230
                       ************************************************************

consensus_12280#0      TTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGAAACACAAACAGCATGT 2100
consensus_12280#1      TTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGGAACACAAACAGCATGT 290
                       ******************************************* ****************

consensus_12280#0      TCTGGACTTCTAGTCATCTTCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGT 2160
consensus_12280#1      TCTGGACTTCTAGTCATCTCCTGAAAGGTGCCTTTTGGTCTAATGAGTACATAATGATGT 350
                       ******************* ****************************************

consensus_12280#0      TTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGCAACATATT 2220
consensus_12280#1      TTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGCAACATATT 410
                       ************************************************************

consensus_12280#0      TTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTC 2280
consensus_12280#1      TTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTC 470
                       ************************************************************

consensus_12280#0      GGTGATGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCAC 2340
consensus_12280#1      GGTGATGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCAC 530
                       ************************************************************

consensus_12280#0      AGCCATTTAGCTGAATCTCATTTCTTTGTTCAAATTATGTTAAGAACTTTTTGGGAGGAA 2400
consensus_12280#1      AGCCATTTAGCTGAATCTCATTTCTTTGTTCAAATTATGTTAAGAACTTTTTGGGAGGAA 590
                       ************************************************************

consensus_12280#0      AATATTCCAGAGATAGTAAGTCCTTTTTTTTTGGGCAATGTTAAAAAAAAAGGTATTTCC 2460
consensus_12280#1      AATATTCCAGAGATAGTAAGTCCTTTTTTTTTGGGCAATGGTAAATAATTGGGTATTTCC 650
                       **************************************** **** **   *********

consensus_12280#0      CTTTGAGCTTCTCTAGTTCTGTTTAATGCAATTTTGTAATTTTGTAACTCTTCTGCTGCA 2520
consensus_12280#1      CTTTGAGCTTCAAAAAAAAAA--------------------------------------- 671
                       ***********   *                                             

consensus_12280#0      TGGTGTAAACTT 2532
consensus_12280#1      ------------