These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1051 fasta sequence [TTCCTCGAGCACTGTTGGCCTACTGGAGTAGCCGCAGCGGAAGCGGACAGCAGCATCACAATCAGCGAGATGCAGGCGGCGCTCCTACTCCCAGCGCGGCCGTCGGCGGCGGCGCCGCCTACGCTCTTGCGGCGGGGGGCGGCTTCTGCGTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGCCTCAGCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTTACCGTGGCGGCGGCGG---G---GTCGTCG---TCGTCGTCGGGCCCTCTCTACCCGACGCCTCCCCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTCAAGAGACT-GGGGAAAACAGCGAGGTATTTCAAGAATTTGGGTACTCTTGGGTTCTGGTCCCAGTTGGTGTCCACAGTTGTTTCCGCTGGAATTTTGTCATTTTCTACAGTTATTACTGGGAAGGTGACAGCACCTTTTACATTCTATGCAACTGCTGCTGGTATTG-CCGCGGGTTTTATTTCAGTCTTCTGGTCATTTGGTTACATCCGCCTTTCTGAAAG-ACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTT-AAAAAAATCTAGCTTTCA-TGCGTAAAAAAAAAA] [+] EMBL AK109387 [TTCCTCGAGCACTGTTGGCCTACTGGAGTAGCCGCAGCGGAAGCGGACAGCAGCATCACAATCAGCGAGATGCAGGCGGCGCTCCTACTCCCAGCGCGGCCGTCGGCGGCGGCGCCGCCTACGCTCTTGCGGCGGGGGGCGGCTTCTGCGTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGCCTCAGCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTTACCGTGGCGGCGGCGG G GTCGTCG TCGTCGTCGGGCCCTCTCTACCCGACGCCTCCCCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTCAAGAGACT GGGGAAAACAGCGAGGTATTTCAAGAATTTGGGTACTCTTGGGTTCTGGTCCCAGTTGGTGTCCACAGTTGTTTCCGCTGGAATTTTGTCATTTTCTACAGTTATTACTGGGAAGGTGACAGCACCTTTTACATTCTATGCAACTGCTGCTGGTATTG CCGCGGGTTTTATTTCAGTCTTCTGGTCATTTGGTTACATCCGCCTTTCTGAAAG ACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTT ] [+] EMBL AK069783 [ CACAATCAGCGAGATGCAGGCGGCGCTCCTACTCCCAGCGCGGCCGTCGGCGGCGGCGCCGCCTACGCTCTTGCGGCGGGGGGCGGCTTCTGCGTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGCCTCAGCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTTACCGTGGCGGCGGCGG GGTCGTCGTCG TCGTCGTCGGGCCCTCTCTACCCGACGCCTCCCCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTCAAGAGACT GGGGAAAACAGCGAGGTATTTCAAGAATTTGGGTACTCTTGGGTTCTGGTCCCAGTTGGTGTCCACAGTTGTTTCCGCTGGAATTTTGTCATTTTCTACAGTTATTACTGGGAAGGTGACAGCACCTTTTACATTCTATGCAACTGCTGCTGGTATTG CCGCGGGTTTTATTTCAGTCTTCTGGTCATTTGGTTACATCCGCCTTTCTGAAAG ACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTTAAAAAAAATCTAGCT ] [+] EMBL C26756 [ CCTACTCCCAGCGCGGCCGTCGGCGGCGGCGCNNTNANCGCTCTTGCGGCGGGGGGCGGCTTCTNCTTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGNGCCTCANCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTTACCGTGGCGGCGGCGG G GTCGTCGTCNTCNTCGTCGGGCCCTCTNTACCCGANGNCTCCCCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTCAAGAGACTGGGGGAAAACAGCGAGGTATTTCAAGANTTTGGGTACTCTTGGGTTCTGGTCCCAnt ] [+] EMBL C26125 [ CTACTCCCAGCGCGGCCGTCGGCGGCGGCGCC CTNACNCTCTTGCGGCGGGGGGCGGCTTCTNCTTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGCCTCANCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTTACCGTGGCGGCGGCGGNCTN GTCGTCG TCGTCGTCGGGCCCTCTCTACCCNACGCCTCCCCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTNAAGAGACT GGGGAAAACAGCGAGGTATTTNAAGAATTTGGGTACTCTTNGGTTCTGGTCCCAATTGG ] [+] EMBL AU100760 [ TTCTACAGTTATTACTGGGAAGGTGACAGCACCTTTTACATTCTATGCAACTGCTGCTGGTATTG CCGCGGGTTTTATTTCAGTCTTCTGGTCATTTGGTTACATCCGCCTTTCTGAAAG ACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTG TGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTT AAAAAAATCTAGCTTTCA TGCGTAAAAAAAAAA] [+] EMBL BI806503 [ tgcCTGGTATTGCCCCCGGGTTTTATTTCAGTCTTCT GTCATTGGGTAACATCCGCCTTTCTGAAAGAACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAATTTA AAAAAAATCTAGCTTTCACTGCGTAAAAAAAAAA] [+] EMBL D42690 [ TCGGCATGCAAGCAACTGTTGGGNCTTTGGTAGCGAA GNTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTNGCTCTAGATGTTTNNCTAGTTCAGGCTTC ] [+] EMBL AU058381 [ CTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTT NTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGNGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTTAAAAAAAATCTAGCTTTCA TGCGTAAAAA ] consensusID : consensus_12287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [TATTNAAAATAAAAGGGAGGAAACNCTTAAATTTAAGNAATGGGNGGAACNCGGGGTTAATNCANTTTNGGTCATGGAAANNCCCCTTTTGGAAGAGTAGAAAACAGCNAGGGACCTGTNANGTTCTTCNAAGTGNTGAGNAATNANAGTTTGAAAAAATGGCATTGTGCTCAANATGCTCGGGATGGTGTGCAGTTNTCGGCATGCAAGCAANTGTTGGGGCTTTGGTAGCGAAGGNTCTTACTACCTCTGCAGTACCTTANTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTNTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTTTAAAAAAATCTAGCTTTCACTGCGTAAAAAAAAAAA] [-] EMBL AA753260 [TATTNAAAATAAAAGGGAGGAAACNCTTAAATTTAAGNAATGGGNGGAACNCGGGGTTAATNCANTTTNGGTCATGGAAANNCCCCTTTTGGAAGAGTAGAAAACAGCNAGGGACCTGTNANGTTCTTCNAAGTGNTGAGNAATNANAGTTTGAAAAAATGGCATTGTGCTCAANATGCTCGGGATGGTGTGCAGTTNTCGGCATGCAAGCAANTGTTGGGGCTTTGGTAGCGAAGGNTCTTACTACCTCTGCAGTACCTTANTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTNTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTTTAAAAAAATCTAGCTTTCACTGCGTAAAAAAAAAAA] consensusID : consensus_12287#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [GGCGCTCCTACTCCCAGCGCGGCCGTCGGGGCGGCGCCTTATCGCTCTTNCGGCGGGGGGCGGCTTCTGCGTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGCCTCAGGGCGGCGTNCTGAGCGCTGTGGGCGCCTTACCGTGGCGGCGGCGGGGTCGTCGTCGTCGTCGTCGGGNNCTCTCTACNCGACGCCTNNCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTNTCAAAAACTGGGGAAACAGCGAGGTATTTCAANAATTTGGGANTCTTGGGGTCTGGTCCAGTTGGTGTCACAGTTGTTCGCTGGANTTTGTATTTCNCAGTA] [+] EMBL AU166203 [GGCGCTCCTACTCCCAGCGCGGCCGTCGGGGCGGCGCCTTATCGCTCTTNCGGCGGGGGGCGGCTTCTGCGTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGCCTCAGGGCGGCGTNCTGAGCGCTGTGGGCGCCTTACCGTGGCGGCGGCGGGGTCGTCGTCGTCGTCGTCGGGNNCTCTCTACNCGACGCCTNNCCCACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTNTCAAAAACTGGGGAAACAGCGAGGTATTTCAANAATTTGGGANTCTTGGGGTCTGGTCCAGTTGGTGTCACAGTTGTTCGCTGGANTTTGTATTTCNCAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12287#0 TTCCTCGAGCACTGTTGGCCTACTGGAGTAGCCGCAGCGGAAGCGGACAGCAGCATCACA 60 consensus_12287#2 ------------------------------------------------------------ consensus_12287#1 ----------------------------TATTNAAAATAAAAGGGAGGAAACNCTTAAAT 32 consensus_12287#0 ATCAGCGAGATGCAGGCGGCGCTCCTACTCCCAGCGCGGCCGTCGGCGGCGGCGCCGCCT 120 consensus_12287#2 -----------------GGCGCTCCTACTCCCAGCGCGGCCGTCGG-GGCGGCGCCTTAT 42 consensus_12287#1 TTAAGNAATGGGNGGAACNCGGGGTTAATNCANTTTNGGTCATGGAAANNCCCCTTTTGG 92 ** ** * * ** * * * * consensus_12287#0 ACGCTCTTGCGGCGGGGGGCGGCTTCTGCG--TCCTCCGCGCGCGCTCCCACTCCCCTCC 178 consensus_12287#2 -CGCTCTTNCGGCGGGGGGCGGCTTCTGCG--TCCTCCGCGCGCGCTCCCACTCCCCTCC 99 consensus_12287#1 AAGAGTAGAAAACAGCNAGGGACCTGTNANGTTCTTCNAAGTGNTGAGNAATNANAGTTT 152 * * * * * * * * ** ** * * * * consensus_12287#0 CTGCGGGGCGCCTCAGCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTT-ACCGTG---GCG 234 consensus_12287#2 CTGCGGGGCGCCTCAG-GGCGGCGTNCTGAGCGCTGTG-GGCGCCTT-ACCGTG---GCG 153 consensus_12287#1 GAAAAAATGGCATTGTGCTCAANATGCTCGGGATGGTGTGCAGTTNTCGGCATGCAAGCA 212 ** * * * ** * *** * * * * ** ** consensus_12287#0 GCGGCGGGGTCGTCGTCGTCGTCG---GGCCCTCTCTACCCGACGCCTCCCCCCACCGAG 291 consensus_12287#2 GCGGCGGGGTCGTCGTCGTCGTCGTCGGGNNCTCTCTACNCGACGCCTNNCCC-ACCGAG 212 consensus_12287#1 ANTGTTGGGGCTTTGGTAGCGAAGGNTCTTACTACCTCTGCAGTACCTTANT--ATCAAG 270 * *** * * * ** * ** ** * *** * * ** consensus_12287#0 CA---------GGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTCAAG---AGACTGGGG 339 consensus_12287#2 CA---------GGACATCGAGCGGGCCAAGTTCGAGCAGGTTNTCAAA---A-ACTGGGG 259 consensus_12287#1 CAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTNTAGATGTTTTCCTAGTTCAGGCTTCAG 330 ** ** ** * * * * * ** * ** * * * ** * consensus_12287#0 AAAACAGC-----GAGGTATTTCAAGAATTTGGGTA---CTCTTGGGTTC----TGGTCC 387 consensus_12287#2 AAA-CAGC-----GAGGTATTTCAANAATTTGGG-A---NTCTTGGGGTC----TGGTCC 305 consensus_12287#1 CGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCCTGGAGTTGCTGCGCTCC 390 * ** * * * ***** *** * * *** * * *** consensus_12287#0 CAGTTGGTGTCCACAGTTGTTTCCGCTG-GAATTTTGTCATTTTCTACAGTTATTACTGG 446 consensus_12287#2 -AGTTGGTGTC-ACAGTTGTT--CGCTG-GANTTT-GTATTTCNCAGTA----------- 348 consensus_12287#1 GTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGG 450 * * * *** * **** * * * * * consensus_12287#0 GAAGGTGACAGCACCTTTTACATTCTATGCAACTGCTGCTGGTATTGCCGCGGGTTTTAT 506 consensus_12287#2 ------------------------------------------------------------ consensus_12287#1 CAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTA 510 consensus_12287#0 TTCAGTCTTCTGGTCATTTGGTTACATCCGCCTTTCTGAAAGACTTAGAAAAACAGCAAG 566 consensus_12287#2 ------------------------------------------------------------ consensus_12287#1 GGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGTCCAGACAAAATTTTAAAAAAATCT 570 consensus_12287#0 TGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGT 626 consensus_12287#2 ------------------------------------------------------------ consensus_12287#1 AGCTTTCACTGCGTAAAAAAAAAAA----------------------------------- 595 consensus_12287#0 GCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTT 686 consensus_12287#2 ------------------------------------------------------------ consensus_12287#1 ------------------------------------------------------------ consensus_12287#0 GGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCA 746 consensus_12287#2 ------------------------------------------------------------ consensus_12287#1 ------------------------------------------------------------ consensus_12287#0 AAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTC 806 consensus_12287#2 ------------------------------------------------------------ consensus_12287#1 ------------------------------------------------------------ consensus_12287#0 GCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGC 866 consensus_12287#2 ------------------------------------------------------------ consensus_12287#1 ------------------------------------------------------------ consensus_12287#0 AGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGAT 926 consensus_12287#2 ------------------------------------------------------------ consensus_12287#1 ------------------------------------------------------------ consensus_12287#0 CATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGT 986 consensus_12287#2 ------------------------------------------------------------ consensus_12287#1 ------------------------------------------------------------ consensus_12287#0 CCGCCTGTATGTTTCTTGTCCAGACAAAATTTAAAAAAATCTAGCTTTCATGCGTAAAAA 1046 consensus_12287#2 ------------------------------------------------------------ consensus_12287#1 ------------------------------------------------------------ consensus_12287#0 AAAAA 1051 consensus_12287#2 ----- consensus_12287#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||