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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1284 fasta sequence
[ACACCAACCGATTTCGCAGCGCCAGCCCACTGATTCCTCACCGAATTTTTTCATTTTTTTTCTCTCTTTCCATTCTCCCCGGCGATCGAGTAGCCGGCTTCTGCTCGCCGCCCGCGCGCCGGAGGGAGGCGAGGTCCAAAGCCGGCGAGGCGCCATGCACCACGACCCCAACCCCTTCGACGAGGGCGCCGACGATAACCCCTTCTCCAATGGAGGAGGTGGTGGAGCACGTCGTGGTGGTGGTGGCGGCGGTGGTGGTGGCGGTGGCGGAGGCAAGTCTCAGTTCTCGTTCGGGTTCGGCGGCCTCGGCGGCGGCAGCAAGGGCGGTGCCACTGTCGACATCCCCCTCGACAACATGAGCGATTCGAAGGGCAAGGGGAAGGAGCTGTTGCAATGGGAGGCAGATCTCAAGAGACGAGAGGCGGATATCAGGAGAAGGGAGGAAGCTCTCAAGAGTGCCGGGGTGCCCATGGAGGAGAAGAACTGGCCACCATTCTTCCCAATTATCCACCACGACATTGCCAACGAGATACCTGCCAATGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTTCTGGAATTTT-ATTGCTGTCATTGTCTGTTGGATCAGAGG-AGGAGATT-CCAAGCTCTTTTT-CCTGGCTACTATCTACGGTATGCTTGGAATGCCTCTGTCATACTTGATGTGGTATAGGCCTCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTACATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCT-CCA-CCAGTTATATTTCGTGGAAAAT-CATTAA-CTGGTATATTGG-CTG-CAA-TTGA-CA-CCTTCT-CTGAT-CA-TG-CA-ATAGT-CGGGATCTTTTA-CTTTGTCGGATTTG-CCTTGTTTTG-CTTGGAGACA-CTTGTGAG-CATTTGGGTTCTTCAGAAAGTATACA-TGTATTT-CAGAGGG-CA-CA-AGTGAAGTGGG-CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA-TTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTCAATTCTTTACCTATACAAATTGCACTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK106197 [ACACCAACCGATTTCGCAGCGCCAGCCCACTGATTCCTCACCGAATTTTTTCATTTTTTTTCTCTCTTTCCATTCTCCCCGGCGATCGAGTAGCCGGCTTCTGCTCGCCGCCCGCGCGCCGGAGGGAGGCGAGGTCCAAAGCCGGCGAGGCGCCATGCACCACGACCCCAACCCCTTCGACGAGGGCGCCGACGATAACCCCTTCTCCAATGGAGGAGGTGGTGGAGCACGTCGTGGTGGTGGTGGCGGCGGTGGTGGTGGCGGTGGCGGAGGCAAGTCTCAGTTCTCGTTCGGGTTCGGCGGCCTCGGCGGCGGCAGCAAGGGCGGTGCCACTGTCGACATCCCCCTCGACAACATGAGCGATTCGAAGGGCAAGGGGAAGGAGCTGTTGCAATGGGAGGCAGATCTCAAGAGACGAGAGGCGGATATCAGGAGAAGGGAGGAAGCTCTCAAGAGTGCCGGGGTGCCCATGGAGGAGAAGAACTGGCCACCATTCTTCCCAATTATCCACCACGACATTGCCAACGAGATACCTGCCAATGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTTCTGGAATTTT ATTGCTGTCATTGTCTGTTGGATCAGAGG AGGAGATT CCAAGCTCTTTTT CCTGGCTACTATCTACGGTATGCTTGGAATGCCTCTGTCATACTTGATGTGGTATAGGCCTCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTACATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCT CCA CCAGTTATATTTCGTGGAAAAT CATTAA CTGGTATATTGG CTG CAA TTGA CA CCTTCT CTGAT CA TG CA ATAGT CGGGATCTTTTA CTTTGTCGGATTTG CCTTGTTTTG CTTGGAGACA CTTGTGAG CATTTGGGTTCTTCAGAAAGTATACA TGTATTT CAGAGGG CA CA AGTGAAGTGGG CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA TTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTCAATTCTTTACCTATACAAATTG ]
[+] EMBL AU173008 [ CAGCGCCAGCCCACTGATTCCTCACCGAATTTTTTCATTTTTTTTCTCTCTTTCCATTCTCCCCGGCGATCGAGTAGCCGGCTTCTGCTCGCCGCCCGCGCGCCGGAGGGAGGCGAGGTCCAAAGCCGGCGAGGCGCCATGCACCACGACCCCAACCCCTTCGACGAGGGCGCCGACGATAACCCCTTCTCCAATGGAGGAGGTGGTGGAGCACGTCGTGGTGGTGGTGGCGGCGGTGGTGGTGGCGGTGGCGGAGGCAAGTCTCAGTTCTCGTTCGGGTTCGGCGGCCTCGGCGGCGGCAGCAAGGGCGGTGCCACTGTCGACATCCCCCTCGACAACATGAGCGATTCGAAGGGCAAGGGGAAGGAGCTGTTGCAATGGGAGGCAGATCTCAAGAGACGAGAGGCGGATATCAGGAGAAGGGAGGAAGCTCTCAAGAGTGCCGGGGTGCCCATGGAGGAGAAGAACTGGCCACCATTCTTCCCAATTATCCACCACGACATTGCCAACGAGATACCTGCCAATGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTTC ]
[+] EMBL AU161407 [ TCCCCGGCGATCGAGTAGCCGGCTTCTGCTCGCCGCCCGCGCGCCGGAGGGAGGCGAGGTCCAAAGCCGGCGAGGCGCCATGCACCACGACCCCAACCCCTTCGACGAGGGCGCCGACGATAACCCCTTCTCCAATGGAGGAGGTGGTGGAGCACGTCGTGGTGGTGGTGGCGGCGGTGGTGGTGGCGGTGGCGGAGGCAAGTCTCAGTTCTCGTTCGGGTTCGGCGGCCTCGGCGGCGGCAGCAAGGGCGGTGCCACTGTCGACATCCCCCTCGACAACATGAGCGATTCGAAGGGCAAGGGGAAGGAGCTGTTGCAATGGGAGGCAGATCTCAAGAGACGAGAGGCGGATATCAGGAGAAGGGAGGAAGCTCTCA ]
[+] EMBL AU161408 [ CTTCTGNAATTTTAATTGCTGTCATTGTCTGTTGGTCCAGAGGAAGAAGATTCCCAAGCTCTTTTTCCCTGGCTACTATCTACGGTATGCTTGGAATGCNTCTGTCATACTTGATGTGGTATAGGCCTCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTACATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCT CCA CCAGTTATATTTCGTGGAAAAT CATTAA CTGGTATATTGG CTG CAA TTGA CA CCTTCT CTGAT CA TG CA ATAGT CGGGATCTTTTA CTTTGTCGGATTTG CCTTGTTTTG CTTGGAGACA CTTGTGAG CATTTGGGTTCTTCAGAAAGTATACA TGTATTT CAGAGGG CA CA AGTGAAGTGGG CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA TTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTCAATTCTTTACCTATACAAATTGCACTTTGTTCAAAAAAAA ]
[+] EMBL CA767255 [ ACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTACATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCT CCA CCAGTTATATTTCGTGGAAAAT CATTAA CTGGTATATTGG CTG CAA TTGA CA CCTTCT CTGAT CA TG CA ATAGT CGGGATCTTTTA CTTTGTCGGATTTG CCTTGTTTTG CTTGGAGACA CTTGTGAG CATTTGGGTTCTTCAGAAAGTATACA TGTATTT CAGAGGG CA CA AGTGAAGTGGG CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTGTCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTATTTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTCAATTCTTTACCTATACAAATTGCACTTTGT ]
[+] EMBL AU173009 [ TCGCT CCA CCAGTTATATTTCGTGGAAAAT CATTAA CTGGTATATTGG CTG CAA TTGA CA CCTTCT CTGAT CA TG CA ATAGT CGGGATCTTTTA CTTTGTCGGATTTG CCTTGTTTTG CTTGGAGACA CTTGTGAG CATTTGGGTTCTTCAGAAAGTATACA TGTATTT CAGAGGG CA CA AGTGAAGTGGG CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA TTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTCAATTCTTTACCTATACAAATTGCACTTTGTTCAAAAA ]
[+] EMBL BI795405 [ TCGCTCCCACCCAGTTATATTTCGTGGAAAATCCATTAACCTGGTATATTGGCCTGCCAATTTGACCACCCTTCTCCTGATCCACTGCCACATAGTCCGGGATCTTTTACCTTTGTCGGATTTGCCCTTGTTTTGCCTTGGAGACACCTTGTGAGCCATTTGGGTTCTTCAGAAAGTATACACTGTATTTCCAGAGGGCCACCACAGTGAAGTGGGCCCGTGGAAGAAATATTACCAAAGCCCACCAAATACTGTCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA TTTTTTTTAAC GGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTC ATTCTTTACCTATAC AATTGCA ]
[-] EMBL OSC109491 [ CGGGGAAAATCCATTAA CTGGTATATTGG CTG CAA TTGA CA CCTTCT CTGAT CA TG CA ATAGT CGGGATCTTTTA CTTTGTCGGATTTG CCTTGTTTTG CTTGGAGACA CTTGTGAG CATTTGGGTTCTTCAGAAAGTATACA TGTATTT CAGAGGG CA CA AGTGAAGTGGG CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA TTTTTTTTAAAAANTATACAAT ]
[+] EMBL AU164774 [ TA CTTTGTCGGATTTG CCTTGTTTTG CTTGGAGACA CTTGTGAG CATTTGGGTTCTTCAGAAAGTATACA TGTATTT CAGAGGG CA CA AGTGAAGTGGG CCGTGGAAGAAATATTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTACATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAGTGTTA TTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTGTTGTGTTGAACCTCAATTCTTTACCTATACAAATTGCACTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence
[CCAACGAGATACCTGCCAATGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTTCTGGAATTTTATTGCTGTCATTGTCTGTTGGATCAGAGGAGGAGATTCCAAGCTCTTTTTCCTGGCTACTATCTACGGTATGCTTGGAATGCCTCTGTCATACTTGATGTGGTATAGGCCTCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTACATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCTCCACCAGTTATATTTCGTNNNNNATCATTAACTGGTATATTGGCTGCAATTGANNNNNTCTCTGATCATGCAATAGTNNNGATCTTTTACTTTGNNNNANNNNNN]
[+] EMBL CF197219 [CCAACGAGATACCTGCCAATGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTTCTGGAATTTTATTGCTGTCATTGTCTGTTGGATCAGAGGAGGAGATTCCAAGCTCTTTTTCCTGGCTACTATCTACGGTATGCTTGGAATGCCTCTGTCATACTTGATGTGGTATAGGCCTCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTACATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCTCCACCAGTTATATTTCGTNNNNNATCATTAACTGGTATATTGGCTGCAATTGANNNNNTCTCTGATCATGCAATAGTNNNGATCTTTTACTTTGNNNNANNNNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12296#0 ACACCAACCGATTTCGCAGCGCCAGCCCACTGATTCCTCACCGAATTTTTTCATTTTTTT 60
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 TCTCTCTTTCCATTCTCCCCGGCGATCGAGTAGCCGGCTTCTGCTCGCCGCCCGCGCGCC 120
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 GGAGGGAGGCGAGGTCCAAAGCCGGCGAGGCGCCATGCACCACGACCCCAACCCCTTCGA 180
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 CGAGGGCGCCGACGATAACCCCTTCTCCAATGGAGGAGGTGGTGGAGCACGTCGTGGTGG 240
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 TGGTGGCGGCGGTGGTGGTGGCGGTGGCGGAGGCAAGTCTCAGTTCTCGTTCGGGTTCGG 300
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 CGGCCTCGGCGGCGGCAGCAAGGGCGGTGCCACTGTCGACATCCCCCTCGACAACATGAG 360
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 CGATTCGAAGGGCAAGGGGAAGGAGCTGTTGCAATGGGAGGCAGATCTCAAGAGACGAGA 420
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 GGCGGATATCAGGAGAAGGGAGGAAGCTCTCAAGAGTGCCGGGGTGCCCATGGAGGAGAA 480
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 GAACTGGCCACCATTCTTCCCAATTATCCACCACGACATTGCCAACGAGATACCTGCCAA 540
consensus_12296#1 -----------------------------------------CCAACGAGATACCTGCCAA 19
*******************
consensus_12296#0 TGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTT 600
consensus_12296#1 TGCACAGAAGTTGCAGTACCTTGCATTTGCAAGCTGGCTTGGGATTGTACTTTGTCTCTT 79
************************************************************
consensus_12296#0 CTGGAATTTTATTGCTGTCATTGTCTGTTGGATCAGAGGAGGAGATTCCAAGCTCTTTTT 660
consensus_12296#1 CTGGAATTTTATTGCTGTCATTGTCTGTTGGATCAGAGGAGGAGATTCCAAGCTCTTTTT 139
************************************************************
consensus_12296#0 CCTGGCTACTATCTACGGTATGCTTGGAATGCCTCTGTCATACTTGATGTGGTATAGGCC 720
consensus_12296#1 CCTGGCTACTATCTACGGTATGCTTGGAATGCCTCTGTCATACTTGATGTGGTATAGGCC 199
************************************************************
consensus_12296#0 TCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTA 780
consensus_12296#1 TCTGTACCGCGCAATGAGAACTGATAGCGCATTCAGCTTTGGATGGTTTTTCCTTTGCTA 259
************************************************************
consensus_12296#0 CATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCTCCACCAGTTATATTTCGTGG 840
consensus_12296#1 CATGCTTCACATTGCCTTCTGTGTATTTGCTGCCATCGCTCCACCAGTTATATTTCGTNN 319
**********************************************************
consensus_12296#0 AAAATCATTAACTGGTATATTGGCTGCAATTGACACCTTCTCTGATCATGCAATAGTCGG 900
consensus_12296#1 NNNATCATTAACTGGTATATTGGCTGCAATTGANNNNNTCTCTGATCATGCAATAGTNNN 379
****************************** *******************
consensus_12296#0 GATCTTTTACTTTGTCGGATTTGCCTTGTTTTGCTTGGAGACACTTGTGAGCATTTGGGT 960
consensus_12296#1 GATCTTTTACTTTGNNNNANNNNNN----------------------------------- 404
************** *
consensus_12296#0 TCTTCAGAAAGTATACATGTATTTCAGAGGGCACAAGTGAAGTGGGCCGTGGAAGAAATA 1020
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 TTACAAAAGCCCACCAAATACTATCTGATTGAGCTGCAGTTCTGTGCATACATATATGTA 1080
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 CATGTCGATCTTGTATGTTATGTAGTGATGGAGATGTTCTAAGTACATGTCAATCTATAG 1140
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 TGTTATTTTTTTTAACAGGAATACTATTTTATAGTGTTGTTTTCTGGGCTGATCGGTCTG 1200
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 TTGTGTTGAACCTCAATTCTTTACCTATACAAATTGCACTTTGTTCAAAAAAAAAAAAAA 1260
consensus_12296#1 ------------------------------------------------------------
consensus_12296#0 AAAAAAAAAAAAAAAAAAAAAAAA 1284
consensus_12296#1 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||