cluster # 12302

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12302 cluster # 12302 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12302#0 length = 2283 sequences # 4

consensus_12302#1 length = 787 sequences # 2
consensus_12302#2 length = 620 sequences # 4

consensusID : consensus_12302#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2283
fasta sequence

                              [TCACAAGCGAAGCAAAGCAAAACACGCCTTCGCCTTCGATTCGATTCTTCTCCACTCCGGCCATGGCGTCCGCCGCGTCCTCCTCCTCGTCGTCGACTCAATTCGACGATGCGGCGGCGAGGCGTCAGCAGCAGCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCATCTACGCCCCGGTGCTCCCCCTCATTAGGATTGGGTTGCGGCACAACCCGGTGTGGAGGGATCGCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGCACCTACCTCATGTAAGTGTTTGCTACATTGCGCACCCGAGCTCCTGTATGCAGCTATGCACCGTGTATTTGCTTGTGATGGTTCATGTTCATGTATGATTCGTCATTCATGTACAATGCCAGGTTATTGTGATTGATATCTCCCTGGTTTTATGAGCTGTCTGATATGCACGAGGTAAAGCGATGTATTGTTCTGATTACTTCGAAGGGGATGTGTATGTGTTTGTGCCTAGTTGGTATCGGTGAGGCTTCTCAGAAAGGGTGTAATTCCGTTACAATACGATATGGCAGCTGTTGAGTTTTTCAGCACGTGTAGTATGTATATATGGCTAATATATCTGTTTGTTAAGTAGTAGTATATATGATAGCTATGCAATGACCTGTTCTCTGTTTTCTCTAATACAAATGCTTCACGCGGACTGTTGTACCATAAATGATTTCAATGTCTGCCGCTTGCCAAAAATCTGTAGTTGTGATCACTGCAAAGGAACTATTTTTAGTTCTTCTCCCATGCTCACAGAAAACCTTGGGGGAAGATTTTTGGAACTCAGTACACAACAACAGTTTTATATTGCTTTGAGTATAACCAAAATTGATGTGATTGGGTGACTTGGCGAGTCAGCCATTACTGATTAAGCACATGAAGCATGGATTCTTTAGTAGAATTTAATCTCAGCAATCTTGACAATCAACTATGGTGGTATAATCTTCTTTACAGTTTTTTCCCCGATTACTGCAAAGGGAAGACTTGATGTATTTGCGCCTACTGCCTAGTTTTCACTTAGGATGTTACTAGTAAGGGTTGTGATATTTTGGCAATGAATTGACTTGTATCACAACACTTGAGTGCTTGTACCTTCATAATGTGAGTTTGAGCATGAGGAAAGGTAGATGCATCCAATCGTAGCAGTATTTTGTTTTCTGCTTCAACCGAGTTGCTGCACATGGTTTCTGCCATTATATGGTTCCAGACTTTTTGGGGCTTACTAATGTAATACTGCTGTGGAAGTGTGGAGTTGAGGTCACTGCAGAGAAATTTTAGTCTAGTGTATATCCACTTTAGATATGAATTTAGTAATTGAGTATTGACAGATTTTATATAAAAGAAGGAAGTTTGGGCCTAAATAACTACTCCCGCCGTTATTAAATGTTTGCTGCTGTTGACTTTTGGGCATGATGTTTGACCGTTCATCGTAAATGTGCAAAAATATAAGGCATGCTTAAAGTACTTTTAGTGATAAAACAAGTCACAACAAAATAAGTGATAGTTTTTTGAATAAGACAGATGATCAAACGTCATGTCCAAAGATCAACATCACTCATACATTTGAAAATGGAGGTAGTAGGCCATAATTTTGGGCATGTTACTGCTTGATTGTGGTGATCATTTGATCTCTGCACAAATCTATTCTTCATATCATGCTAGAGGTTGGGTTATTGAAGCCATAAATATTCAACAATATGTCATTATGGTGAGCCTGTCATGTTTGATGGTGAGGCAAAGAATTTTGTTGTTGACTTGTTTGATGCCCTTCCAATGTTTTTAAAACTTGTTCTATCCCTATCATTGAAGTAAGCAGATATACCTTCTTCGCAAGGATAAGCATAGGTTACTCTAACGCCATAACAGAGGGATCTATTGGGATGTTAATTAACGTAATTCACAATAGATGTGCTTATCTTCTTATCTTTGATGTACTTTCAGATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAGTATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTATCATTTTTGTTAATCCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATATTGGAGCACACATAATAATTCTGACTCTGGAGCAACATGTCCGGCATTTTTTTCCAATTTGATGCACTTGTGTTTTCCTGCTTAAAAAAA]

[+] EMBL AK071760             [TCACAAGCGAAGCAAAGCAAAACACGCCTTCGCCTTCGATTCGATTCTTCTCCACTCCGGCCATGGCGTCCGCCGCGTCCTCCTCCTCGTCGTCGACTCAATTCGACGATGCGGCGGCGAGGCGTCAGCAGCAGCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCATCTACGCCCCGGTGCTCCCCCTCATTAGGATTGGGTTGCGGCACAACCCGGTGTGGAGGGATCGCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGCACCTACCTCATGTAAGTGTTTGCTACATTGCGCACCCGAGCTCCTGTATGCAGCTATGCACCGTGTATTTGCTTGTGATGGTTCATGTTCATGTATGATTCGTCATTCATGTACAATGCCAGGTTATTGTGATTGATATCTCCCTGGTTTTATTAGCTGTCTGATATGCACGAGGTAAAGCGATGTATTGTTCTGATTACTTCGAAGGGGATGTGTATGTGTTTGTGCCTAGTTGTTATCGGTGAGGCTTCTCAGAAAGGGTGTAATTCCGTTAGAATACGATATGGCAGCTGTTGAGTTTTTCAGCACGTGTAGTATGTATATATGGCTAATATATCTGTTTGTTAAGTAGTAGTATATATGATAGCTATGCAATGACCTGTTCTCTGTTTTCTCTAATACAAATGCTTCACGCGGACTGTTGTACCATAAATGATTTCAATGTCTGCCGCTTGCCAAAAATCTGTAGTTGTGATCACTGCAAAGGAACTATTTTTAGTTCTTCTCCCATGCTCACAGAAAACCTTGGGGGAAGATTTTTGGAACTCAGTACACAACAACAGTTTTATATTGCTTTGAGTATAACCAAAATTGATGTGATTGGGTGACTTGGCGAGTCAGCCATTACTGATTAAGCACATGAAGCATGGATTCTTTAGTAGAATTTAATCTCAGCAATCTTGACAATCAACTATGGTGGTATAATCTTCTTTACAGTTTTTTCCCCGATTACTGCAAAGGGAAGACTTGATGTATTTGCGCCTACTGCCTAGTTTTCACTTAGGATGTTACTAGTAAGGGTTGTGATATTTTGGCAATGAATTGACTTGTATCACAACACTTGAGTGCTTGTACCTTCATAATGTGAGTTTGAGCATGAGGAAAGGTAGATGCATCCAATCGTAGCAGTATTTTGTTTTCTGCTTCAACCGAGTTGCTGCACATGGTTTCTGCCATTATATGGTTCCAGACTTTTTGGGGCTTACTAATGTAATACTGCTGTGGAAGTGTGGAGTTGAGGTCACTGCAGAGAAATTTTAGTCTAGTGTATATCCACTTTAGATATGAATTTAGTAATTGAGTATTGACAGATTTTATATAAAAGAAGGAAGTTTGGGCCTAAATAACTACTCCCGCCGTTATTAAATGTTTGCTGCTGTTGACTTTTGGGCATGATGTTTGACCGTTCATCGTAAATGTGCAAAAATATAAGGCATGCTTAAAGTACTTTTAGTGATAAAACAAGTCACAACAAAATAAGTGATAGTTTTTTGAATAAGACAGATGATCAAACGTCATGTCCAAAGATCAACATCACTCATACATTTGAAAATGGAGGTAGTAGGCCATAATTTTGGGCATGTTACTGCTTGATTGTGGTGATCATTTGATCTCTGCACAAATCTATTCTTCATATCATGCTAGAGGTTGGGTTATTGAAGCCATAAATATTCAACAATATGTCATTATGGTGAGCCTGTCATGTTTGATGGTGAGGCAAAGAATTTTGTTGTTGACTTGTTTGATGCCCTTCCAATGTTTTTAAAACTTGTTCTATCCCTATCATTGAAGTAAGCAGATATACCTTCTTCGCAAGGATAAGCATAGGTTACTCTAACGCCATAACAGAGGGATCTATTGGGATGTTAATTAACGTAATTCACAATAGATGTGCTTATCTTCTTATCTTTGATGTACTTTCAGATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAGTATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTATCATTTTTGTTAATCCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATATTGGAGCACACATAATAATTCTGACTCTGGAGCAACATGTCCGGC                                             ]
[+] EMBL CB632242             [          AGCCCATCAAAACACGCCTTCGCCTTCGATTCGATTCTTCTCCACTCCGGCCATGGCGTCCGCCGCGTCCTCCTCCTCGTCGTCGACTCAATTCGACGATGCGGCGGCGAGGCGTCAGCAGCAGCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCATCTACGCCCCGGTGCTCCCCCTCATTAGGATTGGGTTGCGGCACAACCCGGTGTGGAGGGATCGCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGCACCTACCTCATGTAAGTGTTTGCTACATTGCGCACCCGAGCTCCTGTATGCAGCTATGCACCGTGTATTTGCTTGTGATGGTTCATGTTCATGTATGATTCGTCATTCATGTACAATGCCAGGTTATTGTGATTGATATCTCCCTGGTTTTATGAGCTGTCTGATATGCACGAGGTAAAGCGATGTATTGTTCTGATTACTTCGAAGGGGATGTGTATGTGTTTGTGCCTAGTTGGTATCGGTGAGGCTTCTCAGAAAGGGTGTAATTCCGTTACAATACGATATGGCAGCTGTTGAGTTTTTCAGCACGTGTAGTATGTATATATGGCTAATATATCTGTTTGTTAAGTAGTAGTATATATGATAGCTATGCAATGACCTGTTCTCTGTTTTCTCTAATACAAATGCTTCACGCGGACTGTTGTACCATAAATGATTTCAATGTCTGCCGCTTGCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB632919             [                              CGCCTTCGATTCTATTCTTCTCCACTCCGGCCATGGCGTCCGCCGCGTCCTCCTCCTCGTCGTCGACTCAATTCGACGATGCGGCGGCGAGGCGTCAGCAGCAGCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCATCTACGCCCCGGTGCTCCCCCTCATTAGGATTGGGTTGCGGCACAACCCGGTGTGGAGGGATCGCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGCACCTACCTCATGTAAGTGTTTGCTACATTGCGCACCCGAGCTCCTGTATGCAGCTATGCACCGTGTATTTGCTTGTGATGGTTCATGTTCATGTATGATTCGTCATTCATGTACAATGCCAGGATATTGTGATTGATATCTCCCTGGTTTTATGAGCTGTCTGATATGCACGAGGTAAAGCGATGTATTGTTCTGATTACTTCGAAGGGGATGTGTATGTGTTTGTGCCTAGTTGGTATCGGTGAGGCTTCTCAGAAAGGGTGTAATTCCGTTACAATACGATATGGCAGCTGTTGAGTTTTTCAGCACGTGTAGTATGTATATATGGCTAATATATCTGTTTGTTAAGTAGTAGTATATATGATAGCTATGCAATGACCTGTTCTCTGTTTTCTCTAATACAAATGCTTCACGCGGACTGTTGTACCATAAATGATTTCAATGTCTGCCGCTTGCCAAAAATCTGTAGTTGTGATCACTGCAAAGGAACTATTTTTAGTTCTTCTCCCATGCTCACAGAAAACCTTGGGGGAAGATTTTTGGAACTCAGTACACAACAACAGTTGTATATTGCTTTGAGTATAA CAAAATTGATGTGATTGGGTGACTTGGCGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CF335455             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCATATTGGAGCTATACCGCGTAGAGAGCAAGTGAATCATATCTCTCCAAGTATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTATCATTTTTGTTAATCCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATATTGGAGCACACATAATAATTCTGACTCTGGAGCAACATGTCCGGCATTTTTTTCCAATTTGATGCACTTGTGTTTTCCTGCTTAAAAAAA]




>consensus_12302#0
TCACAAGCGAAGCAAAGCAAAACACGCCTTCGCCTTCGATTCGATTCTTCTCCACTCCGG
CCATGGCGTCCGCCGCGTCCTCCTCCTCGTCGTCGACTCAATTCGACGATGCGGCGGCGA
GGCGTCAGCAGCAGCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCA
TCTACGCCCCGGTGCTCCCCCTCATTAGGATTGGGTTGCGGCACAACCCGGTGTGGAGGG
ATCGCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGCACCTACCTCATGTAAG
TGTTTGCTACATTGCGCACCCGAGCTCCTGTATGCAGCTATGCACCGTGTATTTGCTTGT
GATGGTTCATGTTCATGTATGATTCGTCATTCATGTACAATGCCAGGTTATTGTGATTGA
TATCTCCCTGGTTTTATGAGCTGTCTGATATGCACGAGGTAAAGCGATGTATTGTTCTGA
TTACTTCGAAGGGGATGTGTATGTGTTTGTGCCTAGTTGGTATCGGTGAGGCTTCTCAGA
AAGGGTGTAATTCCGTTACAATACGATATGGCAGCTGTTGAGTTTTTCAGCACGTGTAGT
ATGTATATATGGCTAATATATCTGTTTGTTAAGTAGTAGTATATATGATAGCTATGCAAT
GACCTGTTCTCTGTTTTCTCTAATACAAATGCTTCACGCGGACTGTTGTACCATAAATGA
TTTCAATGTCTGCCGCTTGCCAAAAATCTGTAGTTGTGATCACTGCAAAGGAACTATTTT
TAGTTCTTCTCCCATGCTCACAGAAAACCTTGGGGGAAGATTTTTGGAACTCAGTACACA
ACAACAGTTTTATATTGCTTTGAGTATAACCAAAATTGATGTGATTGGGTGACTTGGCGA
GTCAGCCATTACTGATTAAGCACATGAAGCATGGATTCTTTAGTAGAATTTAATCTCAGC
AATCTTGACAATCAACTATGGTGGTATAATCTTCTTTACAGTTTTTTCCCCGATTACTGC
AAAGGGAAGACTTGATGTATTTGCGCCTACTGCCTAGTTTTCACTTAGGATGTTACTAGT
AAGGGTTGTGATATTTTGGCAATGAATTGACTTGTATCACAACACTTGAGTGCTTGTACC
TTCATAATGTGAGTTTGAGCATGAGGAAAGGTAGATGCATCCAATCGTAGCAGTATTTTG
TTTTCTGCTTCAACCGAGTTGCTGCACATGGTTTCTGCCATTATATGGTTCCAGACTTTT
TGGGGCTTACTAATGTAATACTGCTGTGGAAGTGTGGAGTTGAGGTCACTGCAGAGAAAT
TTTAGTCTAGTGTATATCCACTTTAGATATGAATTTAGTAATTGAGTATTGACAGATTTT
ATATAAAAGAAGGAAGTTTGGGCCTAAATAACTACTCCCGCCGTTATTAAATGTTTGCTG
CTGTTGACTTTTGGGCATGATGTTTGACCGTTCATCGTAAATGTGCAAAAATATAAGGCA
TGCTTAAAGTACTTTTAGTGATAAAACAAGTCACAACAAAATAAGTGATAGTTTTTTGAA
TAAGACAGATGATCAAACGTCATGTCCAAAGATCAACATCACTCATACATTTGAAAATGG
AGGTAGTAGGCCATAATTTTGGGCATGTTACTGCTTGATTGTGGTGATCATTTGATCTCT
GCACAAATCTATTCTTCATATCATGCTAGAGGTTGGGTTATTGAAGCCATAAATATTCAA
CAATATGTCATTATGGTGAGCCTGTCATGTTTGATGGTGAGGCAAAGAATTTTGTTGTTG
ACTTGTTTGATGCCCTTCCAATGTTTTTAAAACTTGTTCTATCCCTATCATTGAAGTAAG
CAGATATACCTTCTTCGCAAGGATAAGCATAGGTTACTCTAACGCCATAACAGAGGGATC
TATTGGGATGTTAATTAACGTAATTCACAATAGATGTGCTTATCTTCTTATCTTTGATGT
ACTTTCAGATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAGTATAA
AGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGA
GCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTATCATTTTTGTTAATCCAT
TTAGGCTTTTATGGTTGCTGTAATGATAGAATATTGGAGCACACATAATAATTCTGACTC
TGGAGCAACATGTCCGGCATTTTTTTCCAATTTGATGCACTTGTGTTTTCCTGCTTAAAA
AAA

consensusID : consensus_12302#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 787
fasta sequence

                              [AAATGTTTAGTGCAAATGTGCAAAAATATAAGGCATGCTTAAAGTACTTTTAGTGATAAAACAAGTCACAACAAAATAAGTGATACTTAGTTTTTTGAATAAGACAGATGATCAAACATCATGTCCAAAGATCAACATATACATTTGAAAATGGAGGTAGTAGGCCATAATTTTGGGCATGTTACTGCTTGATTGTGGTGATCATTTGATCTCTGCACAAATCTATTCTTCATATCATGCTAGAGGTTGGGTTATTGAAGCCATAAATATTCAACAATATGTCATTATGGTGAGCCTGTCATGTTTGATGGTGAGGCAAAGAATTTTGTTGTTGACTTGTTTGATGCCCTTCCAATGTTTTTAAAACTTGTTCTATCCCTATCATTGAAGTAAGCAGATATACCTTCTTCGCAAGGATAAGCATAGGTTACTCTAACGCCATAACAGAGGGATCTATTGGGATGTTAATTAACGTAATTCACAATAGATGTGCTTATCTTCTTATCTTTGATGTACTTTCAGATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAGTATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTACCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATATTTGAGCACACATAATAATTCTGACTCTGAAGCAACATGTCCGGCATTTTTTTCCAATTTGATGCACTTGTGTT]

[-] EMBL CB632243             [AAATGTTTAGTGCAAATGTGCAAAAATATAAGGCATGCTTAAAGTACTTTTAGTGATAAAACAAGTCACAACAAAATAAGTGATACTTAGTTTTTTGAATAAGACAGATGATCAAACATCATGTCCAAAGATCAACATATACATTTGAAAATGGAGGTAGTAGGCCATAATTTTGGGCATGTTACTGCTTGATTGTGGTGATCATTTGATCTCTGCACAAATCTATTCTTCATATCATGCTAGAGGTTGGGTTATTGAAGCCATAAATATTCAACAATATGTCATTATGGTGAGCCTGTCATGTTTGATGGTGAGGCAAAGAATTTTGTTGTTGACTTGTTTGATGCCCTTCCAATGTTTTTAAAACTTGTTCTATCCCTATCATTGAAGTAAGCAGATATACCTTCTTCGCAAGGATAAGCATAGGTTACTCTAACGCCATAACAGAGGGATCTATTGGGATGTTAATTAACGTAATTCACAATAGATGTGCTTATCTTCTTATCTTTGATGTACTTTCAGATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAGTATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTACCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATATTTGAGCACACATAATAATTCTGACTCTGAAGCAACATGTCCGGCATTTTTTTCCAATTTGATGCACTTGTGTT]
[-] EMBL CB632920             [                              AGGCATGCTTAAAGTACTTTTAGTGATAAAACAAGTCACAACAAAATAAGTGATACTTAGTTTTTTGAATAAGACAGATGATCAAACATCATGTCCAAAGATCAACATATACATTTGAAAATGGAGGTAGTAGGCCATAATTTTGGGCATGTTACTGCTTGATTGTGGGGATCATTTGATTTTTGCACAAATTTATTTTTCATATCATGCTAGAGGTTGGGTTATTGAAGCCATAAATATTCAACAATATGTCATTATGGTGAGCCTGTCATGTTTGATGGTGAGGCAAAGAATTTTGTTGTTGACTTGTTTGATGCCCTTCCAATGTTTTTAAAACTTGTTTTATCCCTATCATTGAAGTAAGCAGATATCCCTTTTTTGCAAGGATAAGCATAGGTTACTTTAACGCCATAACAGAGGGATTTATTGGGATGTTAATTAACGTAATTCCCAATAGATGTGCTTATTTTTTTATTTTTGATGTACTTTCAGATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATTTTTCCAAGTATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATTTACCATTTAGGCTTTTATGGTTGCTGTAATGAT                                                                                ]




>consensus_12302#1
AAATGTTTAGTGCAAATGTGCAAAAATATAAGGCATGCTTAAAGTACTTTTAGTGATAAA
ACAAGTCACAACAAAATAAGTGATACTTAGTTTTTTGAATAAGACAGATGATCAAACATC
ATGTCCAAAGATCAACATATACATTTGAAAATGGAGGTAGTAGGCCATAATTTTGGGCAT
GTTACTGCTTGATTGTGGTGATCATTTGATCTCTGCACAAATCTATTCTTCATATCATGC
TAGAGGTTGGGTTATTGAAGCCATAAATATTCAACAATATGTCATTATGGTGAGCCTGTC
ATGTTTGATGGTGAGGCAAAGAATTTTGTTGTTGACTTGTTTGATGCCCTTCCAATGTTT
TTAAAACTTGTTCTATCCCTATCATTGAAGTAAGCAGATATACCTTCTTCGCAAGGATAA
GCATAGGTTACTCTAACGCCATAACAGAGGGATCTATTGGGATGTTAATTAACGTAATTC
ACAATAGATGTGCTTATCTTCTTATCTTTGATGTACTTTCAGATCGGAGCTATATGACGT
AGAGAGCAAGTGAATCATATCTCTCCAAGTATAAAGTCAAGGGTATCCATCGGCAGATTT
TGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTTTCAGGTTGATAAA
ATGGACCATGTATCTACCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATATTTGAGC
ACACATAATAATTCTGACTCTGAAGCAACATGTCCGGCATTTTTTTCCAATTTGATGCAC
TTGTGTT

consensusID : consensus_12302#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 620
fasta sequence

                              [TCACAAGCGAAGCAAAGCAAAACACGCCTTCGCCTTCGATTCGATTCTTCTCCACTCCGGCCATGGCGTCCGCCGCGTCCTCCTCCTCGTCGTCGACTCAATTCGACGATGCGGCGGCGAGGCGTCAGCAGCAGCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCATCTACGCCCCGGTGCTCCCCCTCATTAGGATTGGGTTGCGGCACAACCCGGTGTGGAGGGATCGCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGCACCTACCTCATATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAGTATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTATCATTTTTGTTAATCCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATATTGGAGCACACATAATAATTCTGACTCTGGAGCAACATGTCCGGCA-TTTTTTCCAAAAAGTGCACTGGGGTTTCCTGGCTATATGATTTGTCATAGCCCCCTATTTCTATTCTTCCCACA]

[+] EMBL CF335454             [TCACAAGCGAAGCAAAGCAAAACACGCCTTCGCCTTCGATTCGATTCTTCTCCACTCCGGCCATGGCGTCCGCCGCGTCCTCCTCCTCGTCGTCGACTCAATTCGACGATGCGGCGGCGAGGCGTCAGCAGCAGCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCATCTACGCCCCGGTGCTCCCCCTCATTAGGATTGGGTTGCGGCACAACCCGGTGTGGAGGGATCGCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGCACCTACCTCATATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAGTATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTATCATTTTTGTTAATCCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATATTGGAGCACACATAATAATTCTGACTCTGGAGCAACATGTCCGGCA TTTTTTtc                                                                  ]
[+] EMBL CF307973             [                   AAACACGCCTTCGCCTTCGATTCGATTCTTCTCCACTCCGGCCATGGCGTCCGCCGCGTCCTCCTCCTCGTCGTCGACTCAATTCGACGATGCGGCGGCGAGGCGTCAGCAGCAGCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCATCTACGCCCCGGTGCTCCCCCTCATTAGGATTGGGTTGCGGCACAACCCGGTGTGGAGGGATCGCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGCACCTACCTCATATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAGTATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTATCATTTTTGTTAATCCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATCTTGGAGCACACATAATAATTCTGACTCTGGAGCAACATGTCCGGCATTTTTTTCCAAAAA                                                             ]
[+] EMBL CA755728             [                                      ATTCGATTCTTCTCCACTCCGGCCATGGCGTCCGCCGCGTCCTCCTCCTCGTCGTCGACTCAATTCGACGATGCGGCGGCGAGGCGTCAGCAGCAGCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCATCTACGCCCCGGTGCTCCCCCTCATTAGGATTGGGTTGCGGCACAACCCGGTGTGGAGGGATCGCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGCACCTACCTCATATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCGAGTATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTATCATTTTTGTTAATCCATTTAGGCTTTTATGGGTGCTGGTATGATAGAATATTGGAGCACACATAA AATTCTGACTCTGGAGC ACATGTCCGGGA TTTTTTCCATTTGGTGCACTGGGGTTTCCTGGCTATATGATTTGTCATAGCCCCCTATTTCTATTCTTCCCACA]
[-] EMBL CF307974             [                                                                                                    ATTCGACGATGCGGCGGCGAGGCGTCAGCAGCAGCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCATCTACGCCCCGGTGCTCCCCCTCATTAGGATTGGGTTGCGGCACAACCCGGTGTGGAGGGATCGCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGCACCTACCTCATATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAGTATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTATCATTTTTGTTAATCCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATATTGGAGCACACATAATAATTCTGACTCTGGAGCAACATGTCCGGCATTTTTTTCCAAAAAa                                                            ]




>consensus_12302#2
TCACAAGCGAAGCAAAGCAAAACACGCCTTCGCCTTCGATTCGATTCTTCTCCACTCCGG
CCATGGCGTCCGCCGCGTCCTCCTCCTCGTCGTCGACTCAATTCGACGATGCGGCGGCGA
GGCGTCAGCAGCAGCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCA
TCTACGCCCCGGTGCTCCCCCTCATTAGGATTGGGTTGCGGCACAACCCGGTGTGGAGGG
ATCGCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGCACCTACCTCATATCGG
AGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAGTATAAAGTCAAGGGTATC
CATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAATGAGAGCTGTCCGGTTTT
TCAGGTTGATAAAATGGACCATGTATCTATCATTTTTGTTAATCCATTTAGGCTTTTATG
GTTGCTGTAATGATAGAATATTGGAGCACACATAATAATTCTGACTCTGGAGCAACATGT
CCGGCATTTTTTCCAAAAAGTGCACTGGGGTTTCCTGGCTATATGATTTGTCATAGCCCC
CTATTTCTATTCTTCCCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12302#0      TCACAAGCGAAGCAAAGCAAAACACGCCTTCGCCTTCGATTCGATTCTTCTCCACTCCGG 60
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      CCATGGCGTCCGCCGCGTCCTCCTCCTCGTCGTCGACTCAATTCGACGATGCGGCGGCGA 120
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      GGCGTCAGCAGCAGCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCA 180
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      TCTACGCCCCGGTGCTCCCCCTCATTAGGATTGGGTTGCGGCACAACCCGGTGTGGAGGG 240
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      ATCGCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGCACCTACCTCATGTAAG 300
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      TGTTTGCTACATTGCGCACCCGAGCTCCTGTATGCAGCTATGCACCGTGTATTTGCTTGT 360
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      GATGGTTCATGTTCATGTATGATTCGTCATTCATGTACAATGCCAGGTTATTGTGATTGA 420
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      TATCTCCCTGGTTTTATGAGCTGTCTGATATGCACGAGGTAAAGCGATGTATTGTTCTGA 480
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      TTACTTCGAAGGGGATGTGTATGTGTTTGTGCCTAGTTGGTATCGGTGAGGCTTCTCAGA 540
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      AAGGGTGTAATTCCGTTACAATACGATATGGCAGCTGTTGAGTTTTTCAGCACGTGTAGT 600
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      ATGTATATATGGCTAATATATCTGTTTGTTAAGTAGTAGTATATATGATAGCTATGCAAT 660
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      GACCTGTTCTCTGTTTTCTCTAATACAAATGCTTCACGCGGACTGTTGTACCATAAATGA 720
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      TTTCAATGTCTGCCGCTTGCCAAAAATCTGTAGTTGTGATCACTGCAAAGGAACTATTTT 780
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      TAGTTCTTCTCCCATGCTCACAGAAAACCTTGGGGGAAGATTTTTGGAACTCAGTACACA 840
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      ACAACAGTTTTATATTGCTTTGAGTATAACCAAAATTGATGTGATTGGGTGACTTGGCGA 900
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      GTCAGCCATTACTGATTAAGCACATGAAGCATGGATTCTTTAGTAGAATTTAATCTCAGC 960
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      AATCTTGACAATCAACTATGGTGGTATAATCTTCTTTACAGTTTTTTCCCCGATTACTGC 1020
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      AAAGGGAAGACTTGATGTATTTGCGCCTACTGCCTAGTTTTCACTTAGGATGTTACTAGT 1080
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      AAGGGTTGTGATATTTTGGCAATGAATTGACTTGTATCACAACACTTGAGTGCTTGTACC 1140
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      TTCATAATGTGAGTTTGAGCATGAGGAAAGGTAGATGCATCCAATCGTAGCAGTATTTTG 1200
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      TTTTCTGCTTCAACCGAGTTGCTGCACATGGTTTCTGCCATTATATGGTTCCAGACTTTT 1260
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      TGGGGCTTACTAATGTAATACTGCTGTGGAAGTGTGGAGTTGAGGTCACTGCAGAGAAAT 1320
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      TTTAGTCTAGTGTATATCCACTTTAGATATGAATTTAGTAATTGAGTATTGACAGATTTT 1380
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      ATATAAAAGAAGGAAGTTTGGGCCTAAATAACTACTCCCGCCGTTATTAAATGTTTGCTG 1440
consensus_12302#1      ------------------------------------------------------------
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      CTGTTGACTTTTGGGCATGATGTTTGACCGTTCATCGTAAATGTGCAAAAATATAAGGCA 1500
consensus_12302#1      -------------------------AAATGTTTAGTGCAAATGTGCAAAAATATAAGGCA 35
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      TGCTTAAAGTACTTTTAGTGATAAAACAAGTCACAACAAAATAAGTGATA----GTTTTT 1556
consensus_12302#1      TGCTTAAAGTACTTTTAGTGATAAAACAAGTCACAACAAAATAAGTGATACTTAGTTTTT 95
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      TGAATAAGACAGATGATCAAACGTCATGTCCAAAGATCAACATCACTCATACATTTGAAA 1616
consensus_12302#1      TGAATAAGACAGATGATCAAACATCATGTCCAAAGATCAACAT-----ATACATTTGAAA 150
consensus_12302#2      ------------------------------------------------------------
                                                                                   

consensus_12302#0      ATGGAGGTAGTAGGCCATAATTTTGGGCATGTTACTGCTTGATTGTGGTGATCATTTGAT 1676
consensus_12302#1      ATGGAGGTAGTAGGCCATAATTTTGGGCATGTTACTGCTTGATTGTGGTGATCATTTGAT 210
consensus_12302#2      ------------------------------------------------TCACAAGCGAAG 12
                                                                       * *  *    * 

consensus_12302#0      CTCTGCACAAATCTATTCTTCATATCATGCTAGAGGTTGGGTTATTGAAGCCATAAATAT 1736
consensus_12302#1      CTCTGCACAAATCTATTCTTCATATCATGCTAGAGGTTGGGTTATTGAAGCCATAAATAT 270
consensus_12302#2      C--AAAGCAAAACACGCCTTCGCCTTCGATTCGATTCTTCTCCACTCCGGCCATGG-CGT 69
                       *      **** *    ****   *     * **   *     * *   *****     *

consensus_12302#0      TCAACAATATGTCATTATGGTGAGCCTGTCATGTTTGATGGTGAGGCAAAGAATTTTGTT 1796
consensus_12302#1      TCAACAATATGTCATTATGGTGAGCCTGTCATGTTTGATGGTGAGGCAAAGAATTTTGTT 330
consensus_12302#2      CCGCCGCGTCCTCCTCCTCGTCGTCGACTCA-ATTCGACGATGCGGCGGCGAGGC--GTC 126
                        *  *      ** *  * **   *   ***  ** ** * ** ***   **     ** 

consensus_12302#0      GTTGACTTGTTTGATGCCCTTCCAATGTTTTTAAAACTTGTTCTATCCCTA-TCATTGAA 1855
consensus_12302#1      GTTGACTTGTTTGATGCCCTTCCAATGTTTTTAAAACTTGTTCTATCCCTA-TCATTGAA 389
consensus_12302#2      AGCAGCA-GCTGCAGCAGCAGCGGAAGCCGCCGTTGCTGATGCTGCTCCCGCTCATCTAC 185
                            *  * *  *    *  *  * *         **  * **   **   ****  * 

consensus_12302#0      GTAAGCAGATATACCTTCTTCGCAAGGATAAGCATAGGTTACTCTAACGCCATAACAGAG 1915
consensus_12302#1      GTAAGCAGATATACCTTCTTCGCAAGGATAAGCATAGGTTACTCTAACGCCATAACAGAG 449
consensus_12302#2      GCC--CCGGTGCTCCCCCT-CATTAGGATTGGGTTGCGGCAC---AAC-CCGGTGTGGAG 238
                       *    * * *   **  ** *   *****  *  *  *  **   *** **      ***

consensus_12302#0      GGATCTATTGGGATGTTAATTAACGTAATTCACAATAGATGTGCTTATCTTCTTATCTTT 1975
consensus_12302#1      GGATCTATTGGGATGTTAATTAACGTAATTCACAATAGATGTGCTTATCTTCTTATCTTT 509
consensus_12302#2      GGATC-----GCCTCTTCTACGGCGTCCTCGCCGGCGCGTTCGCCCACGGC--------- 284
                       *****     *  * **      ***  *   *      *  **  *             

consensus_12302#0      GATGTACTTTCAGATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAG 2035
consensus_12302#1      GATGTACTTTCAGATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAG 569
consensus_12302#2      -ACCTACCT-CATATCGGAGCTATATGACGTAGAGAGCAAGTGAATCATATCTCTCCAAG 342
                        *  *** * ** ***********************************************

consensus_12302#0      TATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAA 2095
consensus_12302#1      TATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAA 629
consensus_12302#2      TATAAAGTCAAGGGTATCCATCGGCAGATTTTGACTTGATTGTAAGTCATCAACTGTTAA 402
                       ************************************************************

consensus_12302#0      TGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTATCATTTTTGTTAA 2155
consensus_12302#1      TGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTA------------- 676
consensus_12302#2      TGAGAGCTGTCCGGTTTTTCAGGTTGATAAAATGGACCATGTATCTATCATTTTTGTTAA 462
                       ***********************************************             

consensus_12302#0      TCCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATATTGGAGCACACATAATAATTCT 2215
consensus_12302#1      -CCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATATTTGAGCACACATAATAATTCT 735
consensus_12302#2      TCCATTTAGGCTTTTATGGTTGCTGTAATGATAGAATATTGGAGCACACATAATAATTCT 522
                        *************************************** *******************

consensus_12302#0      GACTCTGGAGCAACATGTCCGGCATTTTTTTCCAATTTGATGCACTTGTGTTTTCCTGCT 2275
consensus_12302#1      GACTCTGAAGCAACATGTCCGGCATTTTTTTCCAATTTGATGCACTTGTGTT-------- 787
consensus_12302#2      GACTCTGGAGCAACATGTCCGGCATTTTTTCCAAAA--AGTGCACTGGGGTTTCCTGGCT 580
                       ******* ********************** * **     ****** * ***        

consensus_12302#0      TAAAAAAA-------------------------------- 2283
consensus_12302#1      ----------------------------------------
consensus_12302#2      ATATGATTTGTCATAGCCCCCTATTTCTATTCTTCCCACA 620