cluster # 12311

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Oryza sativa
cluster # 12311 cluster # 12311 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12311#0 length = 969 sequences # 7

consensus_12311#1 length = 112 sequences # 3

consensusID : consensus_12311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 969
fasta sequence

                              [TCTCCTCTCCACAATCTTCGGCTTCGCTTGAAGCCACCGCAATCTCCCCAACTTCCGAAC-AAAAAAAAAAACAAAACAAAAAAATCATCANTTACAGCGACGNTCCACCGCCTCTCCTCCGNTTTNAATCCCCTCGCCGCGAACGGNTCGGGCGGCGGCGGGGGCTAGGGTTTCGCGTTTCGAGGTTTTCCTTCTAGAAGCTTCCGCGGGCGGATGGCCACCGACGAGCTCCACTCCGCCGGCGCGCCAGCGGGCGTGGCGGCGGCGGAGGAGGGGGAGGGGGAGGCGGCGCAGGGGTTCTCGTTCAGCATCTGGCCGCCGACGCAGCGGACGCGGGACGCAGTGGTGCGGCGGCTGGTGGACACCCTGGGCGGGGACACCATCCTCTGCAAGCGCTACGGCGCGGTGCCGGCCGCCGACGCCGAGCCGGCCGCGCGGGGCATCGAGGCCGAGGCCTTCGACGCCGCGGCGGCCAGCGGCGAGGCCGCGGCGACGGCGTCCGTGGAGGAGGGCATCAAGGCGCTGCAGCTCTACTCCAAGGAGGTCAGCCGCCGCCTCCTCGACTTCGTCAAGTCCCGCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGCGCCGCCCGAGGGAGAAGCCCCCGCTGCTCCTTCCGAGAGCGAGGTGGTGGATCCGCAGCCCGCGGAATGAGCGGCTCTCAGTTCGTTAC-AATCTCATTGCCTGAGAAGATGAC-TTGCATCTAAGAGTTCGTTTGGAG-AAATGTGGCTTTGGTCTGGGAACCGATGTAGGTTTCTTGCTCTGATTATCCGTGCAGTTTGTTCTTTGATGAGTAGCTCCTGGCTCTCTTTGTTCTTAGTATTTTACCTGTTTGCTTCCCAGTTGTACTATCTCGTAGCAAGATTATGTTCCGTTTATTATGATAATGATCAAGATTTGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK107769             [TCTCCTCTCCACAATCTTCGGCTTCGCTTGAAGCCACCGCAATCTCCCCAACTTCCGAAC AAAAAAAAAAACAAAACAAAAAAATCATCAATTACAGCGACGCTCCACCGCCTCTCCTCCGCTTTTAATCCCCTCGCCGCGAACGGATCGGGCGGCGGCGGGGGCTAGGGTTTCGCGTTTCGAGGTTTTCCTTCTAGAAGCTTCCGCGGGCGGATGGCCACCGACGAGCTCCACTCCGCCGGCGCGCCAGCGGGCGTGGCGGCGGCGGAGGAGGGGGAGGGGGAGGCGGCGCAGGGGTTCTCGTTCAGCATCTGGCCGCCGACGCAGCGGACGCGGGACGCAGTGGTGCGGCGGCTGGTGGACACCCTGGGCGGGGACACCATCCTCTGCAAGCGCTACGGCGCGGTGCCGGCCGCCGACGCCGAGCCGGCCGCGCGGGGCATCGAGGCCGAGGCCTTCGACGCCGCGGCGGCCAGCGGCGAGGCCGCGGCGACGGCGTCCGTGGAGGAGGGCATCAAGGCGCTGCAGCTCTACTCCAAGGAGGTCAGCCGCCGCCTCCTCGACTTCGTCAAGTCCCGCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGCGCCGCCCGAGGGAGAAGCCCCCGCTGCTCCTTCCGAGAGCGAGGTGGTGGATCCGCAGCCCGCGGAATGAGCGGCTCTCAGTTCGTTAC AATCTCATTGCCTGAGAAGATGAC TTGCATCTAAGAGTTCGTTTGGAG AAATGTGGCTTTGGTCTGGGAACCGATGTAGGTTTCTTGCTCTGATTATCCGTGCAGTTTGTTCTTTGATGAGTAGCTCCTGGCTCTCTTTGTTCTTAGTATTTTACCTGTTTGCTTCCCAGTTGTACTATCTCGTAGCAAGATTATGTTCCGTTTATTATGATAATGATCAA                                                ]
[+] EMBL C96965               [                    GCTTCGCTTGAAGCCACCGCAATCTCCCCAACTTCCGAACAAAAAAAAAAAACAAAACAAAAAANTCATCANTTACAGCGACGNTCCACCGCCTCTCCTCCGNTTTNAATCCCCTCGCCGCGAACGGNTCGGGCGGCGGCGGGGGCTAGGGTTTCGCGTTTCGAGGTTTTCCTTCTAGAAGCTTCCGCGGGCGGATGGCCACCGACGAGCTCCACTCCGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU068742             [                    GCTTCGCTTGAAGCCACCGCAATCTCCCCAACTTCCGAACAAAAAAAAAAAACAAAACAAAAAAATCATCANTTACAGCGACGNTCCACCGCCTCTCCTCCGNTTTNAATCCCCTCGCCGCGAACGGNTCGGGCGGCGGCGGGGGCTAGGGTTTCGCGTTTCGAGGTTTTCCTTCTAGAAGNTTCCGCGGGCGGATGGCCACCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU166786             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CGTGAAGAAGGGCATCAAGGCGCTGCAGCTCTACTCCAAGGAGGTCAGCCNCCGCCTCCTCGANTTGGTCAAGTCCCGTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGCGCCGCCCGAGGGAGAAGCCCCCGCTGCTCCTTCCGAGAGCGAGGTGGTGGATCCNCAGCCCGCGGAATGAGCGGCTCTCAGTTCGTTAC AATCTCATTGCCTGAGAAGATGAC TTGCATCTAAGAGTTCGTTTGGAG AAATGTGGCTTTGGTCTGGGAACCGATGTAGGTTTCTTGCTCTGATTATCCGTGCAGTTTGTTCTTTGATGAGTAGCTCCTGGCTCTCTTTGTTCTTAGTATTTTACCTGTTTGCTTCCCAGTTGTACTATCTCGTAGCAAGATTATGTTCCGTTTATTATGATAATGATCAAGATTTGAACCAAAAA                                 ]
[+] EMBL OSR01761A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCTCCTTCCGAGAGCGAGGTGGTGGATCCGCAGCCCGCGGAATGAGCGGCTCTCAGTTCGTTAC AATCTCATTGCCTGAGAAGATGAC TTGCATCTAAGAGTTCGTTTGGAG AAATGTGGCTTTGGTCTGGGAACCGATGTAGGTTTCTTGCTCTGATTATCCGTGCAGTTTGTTCTTTGATGAGTAGCTCCTGGCTCTCTTTGTTCTTAGTATTTTACCTGTTTGCTTCCCAGTTGTACTATCTCGTAGCAAGATTATGTTCCGTTTATTATGATAATNATCAA                                                ]
[+] EMBL AU181553             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTTCG TACAAATCTCATGCCCTGAAAAAATGACTTTGCATCTAAGAGTTCGTTTGGAGAAAATGTGGCTTTGGTCTGGGAACCGATGTAGGTTTCTTGCTCTGATTATCCGTGCAGTTTGTTCTTTGATGAGTAGCTCCTGGCTCTCTTTGTTCTTAGTATTTTACCTGTTTGCTTCCCAGTTGTACTATCTCGTAGCAAGATTATGTTCCGTTTATTATGATAATGATCAAGATTTGAACCAAAAA                                 ]
[+] EMBL AU058069             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGGCTTTGGTCTGGGAACCGATGTAGGTTTCTTGCTCTGATTATCCGTGCAGTTTGTTCTTTGATGAGTAGCTCCTGGCTCTCTTTGTTCTTAGTATTTTACCTGTTTGCTTCCCAGTTGTACTATCTCGTAGCAAGATTATGTTCCGTTTATTATGATAATGATCAAGATTTGAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12311#0
TCTCCTCTCCACAATCTTCGGCTTCGCTTGAAGCCACCGCAATCTCCCCAACTTCCGAAC
AAAAAAAAAAACAAAACAAAAAAATCATCANTTACAGCGACGNTCCACCGCCTCTCCTCC
GNTTTNAATCCCCTCGCCGCGAACGGNTCGGGCGGCGGCGGGGGCTAGGGTTTCGCGTTT
CGAGGTTTTCCTTCTAGAAGCTTCCGCGGGCGGATGGCCACCGACGAGCTCCACTCCGCC
GGCGCGCCAGCGGGCGTGGCGGCGGCGGAGGAGGGGGAGGGGGAGGCGGCGCAGGGGTTC
TCGTTCAGCATCTGGCCGCCGACGCAGCGGACGCGGGACGCAGTGGTGCGGCGGCTGGTG
GACACCCTGGGCGGGGACACCATCCTCTGCAAGCGCTACGGCGCGGTGCCGGCCGCCGAC
GCCGAGCCGGCCGCGCGGGGCATCGAGGCCGAGGCCTTCGACGCCGCGGCGGCCAGCGGC
GAGGCCGCGGCGACGGCGTCCGTGGAGGAGGGCATCAAGGCGCTGCAGCTCTACTCCAAG
GAGGTCAGCCGCCGCCTCCTCGACTTCGTCAAGTCCCGCTCCGCCGCCGCCGCCGCCGCC
GCCGCCGCGGCGCCGCCCGAGGGAGAAGCCCCCGCTGCTCCTTCCGAGAGCGAGGTGGTG
GATCCGCAGCCCGCGGAATGAGCGGCTCTCAGTTCGTTACAATCTCATTGCCTGAGAAGA
TGACTTGCATCTAAGAGTTCGTTTGGAGAAATGTGGCTTTGGTCTGGGAACCGATGTAGG
TTTCTTGCTCTGATTATCCGTGCAGTTTGTTCTTTGATGAGTAGCTCCTGGCTCTCTTTG
TTCTTAGTATTTTACCTGTTTGCTTCCCAGTTGTACTATCTCGTAGCAAGATTATGTTCC
GTTTATTATGATAATGATCAAGATTTGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

consensusID : consensus_12311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 112
fasta sequence

                              [TCATCTCCTCTCCACAATCTTCAGCTTCGCTTGAAGCCACCGCAATCTCCCCAACTTCCGAAAAAAAAAAAAAAAAAACAC-TGTC-TGCCGTTACGTAGCGTATCGTTGACAG]

[+] EMBL CF281782             [TCATCTCCTCTCCACAATCTCCAGCTTCGCTTGAAGCCACCGCAATCTCCCCAACTTCCGAAAAAAAAAAAAAAAAAACAC TGTC TGCCG                      ]
[-] EMBL CF305472             [ CATCTCCTCTCCACAATCTTCGGCTTCGCTTGAAGCCACCGCAATCTCCCCAACTTCCGAAAAAAAAAAAAAAAAAACACATGTCATGCCGTTACGTAGCGTATCGTTGACAG]
[-] EMBL CF281781             [ CATCTCCTCTCCACAATCTTCAGCTTCGCTTGAAGCCACCGCAATCTCCCCAACTTCCGAAAAAAAAAAAAAAAAAACAC TGTC TGCCGT                     ]




>consensus_12311#1
TCATCTCCTCTCCACAATCTTCAGCTTCGCTTGAAGCCACCGCAATCTCCCCAACTTCCG
AAAAAAAAAAAAAAAAAACACTGTCTGCCGTTACGTAGCGTATCGTTGACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12311#0      ---TCTCCTCTCCACAATCTTCGGCTTCGCTTGAAGCCACCGCAATCTCCCCAACTTCCG 57
consensus_12311#1      TCATCTCCTCTCCACAATCTTCAGCTTCGCTTGAAGCCACCGCAATCTCCCCAACTTCCG 60
                          ******************* *************************************

consensus_12311#0      AACAAAAAAAAAAACAAAACAAAAAAATCATCANTTACAGCGACGNTCCACCGCCTCTCC 117
consensus_12311#1      AAAAAAAAAAAAAAAAAACACTGTCTGCCGTTACGTAGCGTATCGTTG-ACAG------- 112
                       ** *********** ***          * * *  **  *   ** *  ** *       

consensus_12311#0      TCCGNTTTNAATCCCCTCGCCGCGAACGGNTCGGGCGGCGGCGGGGGCTAGGGTTTCGCG 177
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      TTTCGAGGTTTTCCTTCTAGAAGCTTCCGCGGGCGGATGGCCACCGACGAGCTCCACTCC 237
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      GCCGGCGCGCCAGCGGGCGTGGCGGCGGCGGAGGAGGGGGAGGGGGAGGCGGCGCAGGGG 297
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      TTCTCGTTCAGCATCTGGCCGCCGACGCAGCGGACGCGGGACGCAGTGGTGCGGCGGCTG 357
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      GTGGACACCCTGGGCGGGGACACCATCCTCTGCAAGCGCTACGGCGCGGTGCCGGCCGCC 417
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      GACGCCGAGCCGGCCGCGCGGGGCATCGAGGCCGAGGCCTTCGACGCCGCGGCGGCCAGC 477
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      GGCGAGGCCGCGGCGACGGCGTCCGTGGAGGAGGGCATCAAGGCGCTGCAGCTCTACTCC 537
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      AAGGAGGTCAGCCGCCGCCTCCTCGACTTCGTCAAGTCCCGCTCCGCCGCCGCCGCCGCC 597
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      GCCGCCGCCGCGGCGCCGCCCGAGGGAGAAGCCCCCGCTGCTCCTTCCGAGAGCGAGGTG 657
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      GTGGATCCGCAGCCCGCGGAATGAGCGGCTCTCAGTTCGTTACAATCTCATTGCCTGAGA 717
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      AGATGACTTGCATCTAAGAGTTCGTTTGGAGAAATGTGGCTTTGGTCTGGGAACCGATGT 777
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      AGGTTTCTTGCTCTGATTATCCGTGCAGTTTGTTCTTTGATGAGTAGCTCCTGGCTCTCT 837
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      TTGTTCTTAGTATTTTACCTGTTTGCTTCCCAGTTGTACTATCTCGTAGCAAGATTATGT 897
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      TCCGTTTATTATGATAATGATCAAGATTTGAACCAAAAAAAAAAAAAAAAAAAAAAAAAA 957
consensus_12311#1      ------------------------------------------------------------
                                                                                   

consensus_12311#0      AAAAAAAAAAAA 969
consensus_12311#1      ------------