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Oryza sativa
cluster # 12325 cluster # 12325       Sequences # 10       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12325#0 length = 2471 sequences # 8  
 consensus_12325#1 length = 1038 sequences # 2  
consensusID : consensus_12325#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2471
fasta sequence 
                              [CNGACGGCTTGGAGGAGGTGGAGGTGGAGGTGGTGGTGTCCGCTGCCCCCCGCAATAAATAANCCTACCTCCATGTTCCCACCCCCCTCTCTCTCTCTTCTCCGTCTCGCCTCGTCACCTCACCTCGGCATCACCCAGGTGGGAGGGGGTCCGCCTTGACTTTTCGTGTTCGGGTTTGGGTTTGAGTGCCGCATCTGCAAGCTTGTGCGAGGGGGGAATCTCTCTTCCTTGCTGTGGTGGCGGCGGGCGGGAGGGCGGCGTTGATTTCGTTGGGGTTTGCGTTGCGTGCGGAGGACGGGGTTGTGTTTGTGTGTGTGTTTGTGCTGATTTGGGCATTGGTGTTGGTGGTGGAGGAGGATGGGGAACTGCGTGGCGAGGAGCGGGACGGCGGTGGATGCGGGTGGTGATGGAGGGGAGGATGGGAAGAGGCGGAGGAGGAGGTGGAAGGCGCCGCGGGAAGATCAGCTCGGGATGGTGCCCGGCCGGATCTTCTCCAACGACGGCCGCAGCCGGACGGCGACGGTGTACACGCAGCAAGGGCGCAAGGAGATCAACCAGGACGCCATGCTCGTCTGGGATGGGTTCGGCGGCGAGGACGACGGCGTGCTGTGCGGGGTGTTCGACGGGCACGGGCCGCACGGGCACGTGGTGGCGCGGAGGGTCCGCGACTCGCTGCCGCTGAGGCTCATGTCCGCGGCGCGCGACAGCGGGGCGGACATGCCGGCCGCCGCATGGAGGAAGGCCTTCGCGCGCGCCTACAAGGCCATGGACAAGGACCTCCGGTCGCACCCTTCCCTCGATTGCTTCTGCAGCGGAAGCACTGCCGTCACCGTCCTCAAGCTCGGCTCGGATCTCTACATGGCCAACATTGGGGACTCGCGCGCCGTGCTCGGCTCCAGGGAGGCCACCGGCGGCGGCATGGTCGCCGTGCAGCTCACCGTTGATCTCAAGCCGGATGTCCCCAGCGAAGCGGAGAGGATCAAGAAGTGCAGGGGCAGGGTGTTCGCGCTGCAGGACGAGCCGGAGGTGCCAAGGGTCTGGCTGCCGTTCGACGACGCGCCGGGCCTCGCGATGGCGCGAGCGTTCGGGGACTTCTGCCTGAAAGATTACGGGGTCATCTCGGTGCCGGAATTCTTCCACTGGTCTCTCACAGAAAAGGACCAGTTCGTCATTCTTGCATCGGATGGGGTATGGGATGTCCTCAGCAATCAAGAGGCTGTTGATATAGTGTCCGCGTCCCCAAGCAGATCAAAGGCTGCAAAATCCCTTGTTGAGGCAGCCACTCGTGAATGGAAAACCAAATATCCAACATCCAAAATCGATGATTGCGCGGTTGTTTGCTTATATTTGGATGGAAAAATGGACCATGAGCGTGACTCAACTGCCTCATTGGACAACATCAGTATTGAAGAGGGTTCAGTTGCAGATCCTAATGAACCTCAGGAG-CAGGAGCCCACCTTAACTCGGAATTTC-ACAGTTAGGACAGTTGCAGGCA-GCACGC--AAGA-GAAGACCTTAGCAGGGGTGGATGCGAGGATTGCTGGTGTAGCGAACGACCAAAATTGGTCAGGTCTCGATGGA-GTGACACGGGTAAACTCACTTGTTCAGCTTCCTAGGTTTT-CTGAAGAGAGGGCAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCTATTGTTCTGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATGTGGGACGATCTTGTGATTTGGTGCGGTACTTGGCAAGCGTTTCAGCCACTATGCATAGAAGTCGAGTTGCACGTTTTAGCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGCATGTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAATTTTGCTGGGTTAAAACGAACAAAAGACGACGCCAAACACAGTGGCTAAACGCACGCCAGGCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACCTGTAAATTCTCCACCGGCGCTTGCTTTGC-TTTTGTAGAGAGGTGATGTCCAGACCATTTTCTCCGCTGCATGCTTAGCTTTTGTTGACACAGGGCGGTGCGCTCTGTCGATGTCGGATTGCCAATCTTTGCCCCCTTTGTTTTGTTCGCGGTCTGTGCCCTTGCTTTTACTCTCCTGGAGCCATCATGCCACCGAGAAAAATGGCAGTCTCAATACTTTTAGGCCCCCTTTCATTCAAAGGGAATTCATAGAAATTTTAGAGGATTTTATTTCTATAGGAATTTTTTCTACAAAGCCCTTTGAATGAAAGAAATGAACCCTATGGAATCCTATGAAATTTTTATGGGATTTTAACAAGAGGTAAAACCTCATGGAAAAAATCCTTTGAGTCTTTATCTCTCCTTAAATTCCTGTGTTTTTTTGGTCCATTAAACGATCATTCCTACAAAAAAAA]

[+] EMBL AU055765             [CNGACGGCTTGGAGGAGGTGGAGGTGGAGGTGGTGGTGTCCGCTGCCCCCCGCAATAAATAANCCTACCTCCATGTTCCCACCCCCCTCTCTCTCTCTTCTCCGTCTCGCCTCGTCACCTCACCTCGGCATCACCCAGGTGGGAGGGGGTCCGCCTTGACTTTTCGTGTTCGGGTTTGGGTTTGAGTGCCGCATCTGCAAGCTTGTGCGANGGGGGAATCTCTCTTCCTTGCTGTGGTGGCGGCGGGCGGGANGGCGGCGTTGATTTCGTTGGGGTTTGCGTTGCGTGCGGANGACGGGGTTGTGTTTGTGTGTGTGTTTGTGCTGAATTNGGCATTGGTGTTGGTGGTTGAAGAAGATGGGGAACTCCNT GCCAAGA CCGGACGGCGGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK069418             [                  TGGAGGTGGAGGTGGTGGTGTCCGCTGCCCCCCGCAATAAATAAGCCTACCTCCATGTTCCCACCCCCCTCTCTCTCTCTTCTCCGTCTCGCCTCGTCACCTCACCTCGGCATCACCCAGGTGGGAGGGGGTCCGCCTTGACTTTTCGTGTTCGGGTTTGGGTTTGAGTGCCGCATCTGCAAGCTTGTGCGAGGGGGGAATCTCTCTTCCTTGCTGTGGTGGCGGCGGGCGGGAGGGCGGCGTTGATTTCGTTGGGGTTTGCGTTGCGTGCGGAGGACGGGGTTGTGTTTGTGTGTGTGTTTGTGCTGATTTGGGCATTGGTGTTGGTGGTGGAGGAGGATGGGGAACTGCGTGGCGAGGAGCGGGACGGCGGTGGATGCGGGTGGTGATGGAGGGGAGGATGGGAAGAGGCGGAGGAGGAGGTGGAAGGCGCCGCGGGAAGATCAGCTCGGGATGGTGCCCGGCCGGATCTTCTCCAACGACGGCCGCAGCCGGACGGCGACGGTGTACACGCAGCAAGGGCGCAAGGAGATCAACCAGGACGCCATGCTCGTCTGGGATGGGTTCGGCGGCGAGGACGACGGCGTGCTGTGCGGGGTGTTCGACGGGCACGGGCCGCACGGGCACGTGGTGGCGCGGAGGGTCCGCGACTCGCTGCCGCTGAGGCTCATGTCCGCGGCGCGCGACAGCGGGGCGGACATGCCGGCCGCCGCATGGAGGAAGGCCTTCGCGCGCGCCTACAAGGCCATGGACAAGGACCTCCGGTCGCACCCTTCCCTCGATTGCTTCTGCAGCGGAAGCACTGCCGTCACCGTCCTCAAGCTCGGCTCGGATCTCTACATGGCCAACATTGGGGACTCGCGCGCCGTGCTCGGCTCCAGGGAGGCCACCGGCGGCGGCATGGTCGCCGTGCAGCTCACCGTTGATCTCAAGCCGGATGTCCCCAGCGAAGCGGAGAGGATCAAGAAGTGCAGGGGCAGGGTGTTCGCGCTGCAGGACGAGCCGGAGGTGCCAAGGGTCTGGCTGCCGTTCGACGACGCGCCGGGCCTCGCGATGGCGCGAGCGTTCGGGGACTTCTGCCTGAAAGATTACGGGGTCATCTCGGTGCCGGAATTCTTCCACTGGTCTCTCACAGAAAAGGACCAGTTCGTCATTCTTGCATCGGATGGGGTATGGGATGTCCTCAGCAATCAAGAGGCTGTTGATATAGTGTCCGCGTCCCCAAGCAGATCAAAGGCTGCAAAATCCCTTGTTGAGGCAGCCACTCGTGAATGGAAAACCAAATATCCAACATCCAAAATCGATGATTGCGCGGTTGTTTGCTTATATTTGGATGGAAAAATGGACCATGAGCGTGACTCAACTGCCTCATTGGACAACATCAGTATTGAAGAGGGTTCAGTTGCAGATCCTAATGAACCTCAGGAG CAGGAGCCCACCTTAACTCGGAATTTC ACAGTTAGGACAGTTGCAGGCA GCACGC  AAGA GAAGACCTTAGCAGGGGTGGATGCGAGGATTGCTGGTGTAGCGAACGACCAAAATTGGTCAGGTCTCGATGGA GTGACACGGGTAAACTCACTTGTTCAGCTTCCTAGGTTTT CTGAAGAGAGGGCAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCTATTGTTCTGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATGTGGGACGATCTTGTGATTTGGTGCGGTACTTGGCAAGCGTTTCAGCCACTATGCATAGAAGTCGAGTTGCACGTTTTAGCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGCATGTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAATTTTGCTGGGTTAAAACTAACAAAAGACGACGCCAAACACAGTGGCTAAACGCACGCCAGGCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACTTGTAAATTCTCCACCGGCGCTTGCTTTGC TTTTGTAGAGAGGTGATGTCCAGACCAT                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK070426             [                                                                                                                    ACCTCACCTCGGCATCACCCAGGTGGGAGGGGGTCCGCCTTGACTTTTCGTGTTCGGGTTTGGGTTTGAGTGCCGCATCTGCAAGCTTGTGCGAGGGGGGAATCTCTCTTCCTTGCTGTGGTGGCGGCGGGCGGGAGGGCGGCGTTGATTTCGTTGGGGTTTGCGTTGCGTGCGGAGGACGGGGTTGTGTTTGTGTGTGTGTTTGTGCTGATTTGGGCATTGGTGTTGGTGGTGGAGGAGGATGGGGAACTGCGTGGCGAGGAGCGGGACGGCGGTGGATGCGGGTGGTGATGGAGGGGAGGATGGGAAGAGGCGGAGGAGGAGGTGGAAGGCGCCGCGGGAAGATCAGCTCGGGATGGTGCCCGGCCGGATCTTCTCCAACGACGGCCGCAGCCGGACGGCGACGGTGTACACGCAGCAAGGGCGCAAGGGGATCAACCAGGACGCCATGCTCGTCTGGGATGGGTTCGGCGGCGAGGACGACGGCGTGCTGTGCGGGGTGTTCGACGGGCACGGGCCGCACGGGCACGTGGTGGCGCGGAGGGTCCGCGACTCGCTGCCGCTGAGGCTCATGTCCGCGGCGCGCGACAGCGGGGCGGACATGCCGGCCGCCGCATGGAGGAAGGCCTTCGCGCGCGCCTACAAGGCCATGGACAAGGACCTCCGGTCGCACCCTTCCCTCGATTGCTTCTGCAGCGGAAGCACTGCCGTCACCGTCCTCAAGCTCGGCTCGGATCTCTACATGGCCAACATTGGGGACTCGCGCGCCGTGCTCGGCTCCAGGGAGGCCACCGGCGGCGGCATGGTCGCCGTGCAGCTCACCGTTGATCTCAAGCCGGATGTCCCCAGCGAAGCGGAGAGGATCAAGAAGTGCAGGGGCAGGGTGTTCGCGCTGCAGGACGAGCCGGAGGTGCCAAGGGTCTGGCTGCCGTTCGACGACGCGCCGGGCCTCGCGATGGCGCGAGCGTTCGGGGACTTCTGCCTGAAAGATTACGGGGTCATCTCGGTGCCGGAATTCTTCCACTGGTCTCTCACAGAAAAGGACCAGTTCGTCATTCTTGCATCGGATGGGGTATGGGATGTCCTCAGCAATCAAGAGGCTGTTGATATAGTGTCCGCGTCCCCAAGCAGATCAAAGGCTGCAAAATCCCTTGTTGAGGCAGCCACTCGTGAATGGAAAACCAAATATCCAACATCCAAAATCGATGATTGCGCGGTTGTTTGCTTATATTTGGATGGAAAAATGGACCATGAGCGTGACTCAACTGCCTCATTGGACAACATCAGTATTGAAGAGGGTTCAGTTGCAGATCCTAATGAACCTCAGGAG CAGGAGCCCACCTTAACTCGGAATTTC ACAGTTAGGACAGTTGCAGGCA GCACGC  AAGA GGAGACCTTAGCAGGGGTGGATGCGAGGATTGCTGGTGTAGCGAACGACCAAAATTGGTCAGGTCTCGATGGA GTGACACGGGTAAACTCACTTGTTCAGCTTCCTAGGTTTT CTGAAGAGAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BQ907286             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCTCAGGAGCCAGGAGCCCACCTTAACTCGGAATTTCNACAGTTAGGACAGTTGCA GCAGGCACGCCAAAGAGGAAGACCTTA CAGGGGTGAATCCGAGGATTGCTGGTGTAGCGAACGACC AAATTGGTCAGGTCTCGATGGAGGTGACACGGGTAAACTCACTTGTTCAGCTTCCTAGGTTTT CTGAAGAGAGGGCAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCTATTGTTCTGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATGTGGGACGATCTTGTGATTTGGTGCGGTACTTGGCAAGCGTTTCA CCACTATGCATAGAAGTCGAGTTGCACGTTTTAGCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGCATGTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAATTTTGCTGGGTTAAAACGAAC AAAGACGACGCCAAACACAGTGGCTAAACGCACGCCAGGCCCCAGTCA CCCTGGGATGATATTGTCGGGTGACCTGTAAATTCTCCACCGGCGCTTGCTTTGC TTTTGTAGAGAGGTGATGTCCAGACCATTTTCTCCGCTGCATGCTTAGCTTTTGTTGACACAGGGCGGTGCGCTCTGTCGAaaaa                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB636133             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCTCGATGGA GTGACACGGGTAAACTCACTTGTTCAGCTTCTTAGGTTTTATTGAAGAGAGGGCAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCTATTGTTCTGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATGTGGGACGATCTTGTGATTTGGTGCGGTACTTGGCAAGCGTTTCAGCCACTATGCATAGAAGTCGAGTTGCACGTTTTAGCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGCATGTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAATTTTGCTGGGTTAAAACTAACAAAAGACGACGCCAAACACAGTGGTTAAACGCACGCCAGGCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACCTGTAAATTCTCCACCGGCGCTTGCTTTGC TTTTGAAAAGAG                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB626751             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCTATTGTTCTGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATGTGGGACGATCTTGTGATTTGGTGCGGTACTTGGCAAGCGTTTCAGCCACTATGCATAGAAGTCGAGTTGCACGTTTTAGCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGCATGTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAATTTTGCTGGGTTAAAACGAACAAAAGACGACGCCAAACACAGTGGCTAAACGCACGCCAGGCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACCTGTAAATTCTCCACCGGCGCTTGCTTTGC TTTTGTAGAGAGGTGATGTCCAGACCATTTTTTCCGCTGCATGCTTAGCTTTTGTTGACACAGGGCGGTGCGCTCTGTCGATGTCGGATTGCCAATCTTTGCCCCCTTTGTTTTGTTCGCGGTCTGTGCCCTTGCTTTTACTCTCCTGGAGCCATCATGCCACCGAGAAAAATGGCAGTCTCAATACTTTTAGGCCCCCTTTCATTCAAAGGGAATTCATAGAAATTTTAGAGGATTTTATTTCTATAGGAATTTTTTCTACAAAGCCCTTTGAATGAAAGAAATGAACCCTATGGAATCCTATGAAATTTTTATGGGATTTTAACAAGAGGTAAA                                                                                         ]
[-] EMBL CB626750             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTTTCACCTATTGTTTTGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATGTGGGACGATCTTGTGATTTGGTGCGGTACTTGGCAAGCGTTTCAGCCACTATGCATAGAAGTCGAGTTGCACGTTTTAGCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGCATGTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAATTTTGCTGGGTTAAAACGAACAAAAGACGACGCCAAACACAGTGGCTAAACGCACGCCAGGCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACCTGTAAATTCTCCCCCGGCGCTTGCTTTGC TTTTGTAGAGAGGTGATGTCCAGACCATTTTTTCCGCTGCATGCTTAGCTTTTGTTGACACAGGGCGGTGCGCTCTGTCGATGTCGGATTGCCAATCTTTGCCCCCTTTGTTTTGTTCGCGGTCTGTGCCCTTGCTTTTACTCTCCTGGAGCCATCATGCCACCGAGAAAAATGGCAGTCTCAATACTTTTAGGCCCCCTTTCATTCAAAGGGAATTCATAGAAATTTTAGAGGATTTTATTTCTATAGGAATTTTTTCTACAAAGCCCTTTGAATGAAAGAAATGAACCCTATGGAATCCTATGAAATTTTTAAAAGGTTTTAACAAGA                                                                                               ]
[+] EMBL BI812673             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCCTGGGATGATATT TCGGGTGACCTGTAAATTCTCCACCGGCGCTTGCTTTGCATTTTGTAGAGAGGTGATGTCCAGACCATTTTCTCCGCTGCATGCTTAGCTTTTGTTGACACAGGGCGGTGCGCTCTGTCGATGTCGGATTGCCCATCTTTGCCCCCTTTGTTTTGTTC CCGTCTGTGCCCTTGCTTTTACTCTCCTGGAGCCATCAT CCACCGAGAAAAATGGCAGTCTCAATACTTTTAGGCCCCCTTTCATTCAAAGGGAATTCATAGAAATTTTAGAGTATTTTATTTCTATAGGAATTTTTTCTAC AAGCCCTTTGAATGAAAGAAATGAACCCTATGGAATCCTATGAAATTTCTATGGAATTTTAAC AGAGGTAGAACCTCATGGAAAAAATCCTTTGAGTCTTTATCTCTCCTTAAATTCCTGTGTTTTTTTGGTCCATTAAACGATCATTCCTACAAAAAAAA]




>consensus_12325#0
CNGACGGCTTGGAGGAGGTGGAGGTGGAGGTGGTGGTGTCCGCTGCCCCCCGCAATAAAT
AANCCTACCTCCATGTTCCCACCCCCCTCTCTCTCTCTTCTCCGTCTCGCCTCGTCACCT
CACCTCGGCATCACCCAGGTGGGAGGGGGTCCGCCTTGACTTTTCGTGTTCGGGTTTGGG
TTTGAGTGCCGCATCTGCAAGCTTGTGCGAGGGGGGAATCTCTCTTCCTTGCTGTGGTGG
CGGCGGGCGGGAGGGCGGCGTTGATTTCGTTGGGGTTTGCGTTGCGTGCGGAGGACGGGG
TTGTGTTTGTGTGTGTGTTTGTGCTGATTTGGGCATTGGTGTTGGTGGTGGAGGAGGATG
GGGAACTGCGTGGCGAGGAGCGGGACGGCGGTGGATGCGGGTGGTGATGGAGGGGAGGAT
GGGAAGAGGCGGAGGAGGAGGTGGAAGGCGCCGCGGGAAGATCAGCTCGGGATGGTGCCC
GGCCGGATCTTCTCCAACGACGGCCGCAGCCGGACGGCGACGGTGTACACGCAGCAAGGG
CGCAAGGAGATCAACCAGGACGCCATGCTCGTCTGGGATGGGTTCGGCGGCGAGGACGAC
GGCGTGCTGTGCGGGGTGTTCGACGGGCACGGGCCGCACGGGCACGTGGTGGCGCGGAGG
GTCCGCGACTCGCTGCCGCTGAGGCTCATGTCCGCGGCGCGCGACAGCGGGGCGGACATG
CCGGCCGCCGCATGGAGGAAGGCCTTCGCGCGCGCCTACAAGGCCATGGACAAGGACCTC
CGGTCGCACCCTTCCCTCGATTGCTTCTGCAGCGGAAGCACTGCCGTCACCGTCCTCAAG
CTCGGCTCGGATCTCTACATGGCCAACATTGGGGACTCGCGCGCCGTGCTCGGCTCCAGG
GAGGCCACCGGCGGCGGCATGGTCGCCGTGCAGCTCACCGTTGATCTCAAGCCGGATGTC
CCCAGCGAAGCGGAGAGGATCAAGAAGTGCAGGGGCAGGGTGTTCGCGCTGCAGGACGAG
CCGGAGGTGCCAAGGGTCTGGCTGCCGTTCGACGACGCGCCGGGCCTCGCGATGGCGCGA
GCGTTCGGGGACTTCTGCCTGAAAGATTACGGGGTCATCTCGGTGCCGGAATTCTTCCAC
TGGTCTCTCACAGAAAAGGACCAGTTCGTCATTCTTGCATCGGATGGGGTATGGGATGTC
CTCAGCAATCAAGAGGCTGTTGATATAGTGTCCGCGTCCCCAAGCAGATCAAAGGCTGCA
AAATCCCTTGTTGAGGCAGCCACTCGTGAATGGAAAACCAAATATCCAACATCCAAAATC
GATGATTGCGCGGTTGTTTGCTTATATTTGGATGGAAAAATGGACCATGAGCGTGACTCA
ACTGCCTCATTGGACAACATCAGTATTGAAGAGGGTTCAGTTGCAGATCCTAATGAACCT
CAGGAGCAGGAGCCCACCTTAACTCGGAATTTCACAGTTAGGACAGTTGCAGGCAGCACG
CAAGAGAAGACCTTAGCAGGGGTGGATGCGAGGATTGCTGGTGTAGCGAACGACCAAAAT
TGGTCAGGTCTCGATGGAGTGACACGGGTAAACTCACTTGTTCAGCTTCCTAGGTTTTCT
GAAGAGAGGGCAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCTAT
TGTTCTGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATGTGGGACGATCTTGTGATT
TGGTGCGGTACTTGGCAAGCGTTTCAGCCACTATGCATAGAAGTCGAGTTGCACGTTTTA
GCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGCAT
GTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAA
TTTTGCTGGGTTAAAACGAACAAAAGACGACGCCAAACACAGTGGCTAAACGCACGCCAG
GCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACCTGTAAATTCTCCACCGGCGCTTG
CTTTGCTTTTGTAGAGAGGTGATGTCCAGACCATTTTCTCCGCTGCATGCTTAGCTTTTG
TTGACACAGGGCGGTGCGCTCTGTCGATGTCGGATTGCCAATCTTTGCCCCCTTTGTTTT
GTTCGCGGTCTGTGCCCTTGCTTTTACTCTCCTGGAGCCATCATGCCACCGAGAAAAATG
GCAGTCTCAATACTTTTAGGCCCCCTTTCATTCAAAGGGAATTCATAGAAATTTTAGAGG
ATTTTATTTCTATAGGAATTTTTTCTACAAAGCCCTTTGAATGAAAGAAATGAACCCTAT
GGAATCCTATGAAATTTTTATGGGATTTTAACAAGAGGTAAAACCTCATGGAAAAAATCC
TTTGAGTCTTTATCTCTCCTTAAATTCCTGTGTTTTTTTGGTCCATTAAACGATCATTCC
TACAAAAAAAA

consensusID : consensus_12325#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1038
fasta sequence 
                              [ANTAGGTNNTTGNCCGGATTTTCATGTTTTANAGAAGGACATTNTATTTTGATTGNTGGGTANGGANTCTTCACATTCAAGGGGTGTGATATAGTTTCGNNTCCCNAAGCAGATCAAAGNTGCAAAATCCNTTGTTGAGCAACNATTNGTGAATGGAAAACCAAATATCCAACATCCAAAATCGATGATTGCGCGGTTGTTTGCTTATATTTGGATGGAAAATGGACCATGAGCGTGANTCAACTGCCTCATTGGACAACATCAGTATTGAAGAGGGTTCAGTTGCAGATCCTAATGAACCTCAGGAGCAGGAGCCCACCTTAACTCGGAATTTCACAGTTAGGACAGTTGCAGGCAGCACGCAAGAGAAGACCTTAGCAGGGGTGGATGCGA-GGATTGCTGGTGTAGCGAACGACCAAAATTGGT-CAGGTCTCGATGGAGTGACACGGGTAAACTCACTTGTTCAGCTTCCTAGGTTTTCTGAAGAGAGGGCAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCTAAAAAAAAGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATTTGGGACGATCTTGTGATTTGGTGCGGTACTTGGCAAGCGTTTCAGCCACTATGCATAGAAGTCGAGTTGCACGTTTTAGCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGCATGTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAATTTTGCTGGGTTAAAACTAACAAAAGACGACGCCAAACACAGTGGCTAAACGCACGCCAGGCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACCTGTAAATTCTCCACCGGCGCTTGCTTTGCTTTTGTAGAGAGGTGATGTCCAGACCATTTTCTCCGCTGCATGCTTAGCTTTTGTTGACACAGGGCGGTGCGCTCTGTCGATGTCGGNTTGCCNNNCTTTGCNNCAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AA753686             [ANTAGGTNNTTGNCCGGATTTTCATGTTTTANAGAAGGACATTNTATTTTGATTGNTGGGTANGGANTCTTCACATTCAAGGGGTGTGATATAGTTTCGNNTCCCNAAGCAGATCAAAGNTGCAAAATCCNTTGTTGAGCAACNATTNGTGAATGGAAAACCAAATATCCAACATCCAAAATCGATGATTGCGCGGTTGTTTGCTTATATTTGGATGGAAAATGGACCATGAGCGTGANTCAACTGCCTCATTGGACAACATCAGTATTGAAGAGGGTTCAGTTGCAGATCCTAATGAACCTCAGGAGCAGGAGCCCACCTTAACTCGGAATTTCACAGTTAGGACAGTTGCAGGCAGCACGCAAGAGAAGACCTTAGCAGGGGTGGATGCGA GGATTGCTGGTGTAGCGAACGACCAAAATTGGT CAGGTCTCGATGGAGTGACACGGGTAAACTCACTTGTTCAGCTTCCTAGGTTTTCTGAAGAGAGGGCAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCTAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU055766             [                                                                                                                                                                                                                                                                                                                                                                                            GGGGTGGATGCGAGGGATTGCTGGTGTAGCGAACGACCAAAATTGGTCCAGTTCTCGATGGAGTGACACGGGTAAACTCACTTGTTCAGCTTCCTAGGTTTTCTGAAGANAGGGCAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCTATTGTTCTGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATTTGGGACGATCTTGTGATTTGGTGCGGTACTTGGCAAGCGTTTCAGCCACTATGCATAGAAGTCGAGTTGCACGTTTTAGCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGCATGTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAATTTTGCTGGGTTAAAACTAACAAAAGACGACGCCAAACACAGTGGCTAAACGCACGCCAGGCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACCTGTAAATTCTCCACCGGCGCTTGCTTTGCTTTTGTAGAGAGGTGATGTCCAGACCATTTTCTCCGCTGCATGCTTAGCTTTTGTTGACACAGGGCGGTGCGCTCTGTCGATGTCGGNTTGCCNNNCTTTGCNNCAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12325#1
ANTAGGTNNTTGNCCGGATTTTCATGTTTTANAGAAGGACATTNTATTTTGATTGNTGGG
TANGGANTCTTCACATTCAAGGGGTGTGATATAGTTTCGNNTCCCNAAGCAGATCAAAGN
TGCAAAATCCNTTGTTGAGCAACNATTNGTGAATGGAAAACCAAATATCCAACATCCAAA
ATCGATGATTGCGCGGTTGTTTGCTTATATTTGGATGGAAAATGGACCATGAGCGTGANT
CAACTGCCTCATTGGACAACATCAGTATTGAAGAGGGTTCAGTTGCAGATCCTAATGAAC
CTCAGGAGCAGGAGCCCACCTTAACTCGGAATTTCACAGTTAGGACAGTTGCAGGCAGCA
CGCAAGAGAAGACCTTAGCAGGGGTGGATGCGAGGATTGCTGGTGTAGCGAACGACCAAA
ATTGGTCAGGTCTCGATGGAGTGACACGGGTAAACTCACTTGTTCAGCTTCCTAGGTTTT
CTGAAGAGAGGGCAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCT
AAAAAAAAGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATTTGGGACGATCTTGTGA
TTTGGTGCGGTACTTGGCAAGCGTTTCAGCCACTATGCATAGAAGTCGAGTTGCACGTTT
TAGCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGC
ATGTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGC
AATTTTGCTGGGTTAAAACTAACAAAAGACGACGCCAAACACAGTGGCTAAACGCACGCC
AGGCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACCTGTAAATTCTCCACCGGCGCT
TGCTTTGCTTTTGTAGAGAGGTGATGTCCAGACCATTTTCTCCGCTGCATGCTTAGCTTT
TGTTGACACAGGGCGGTGCGCTCTGTCGATGTCGGNTTGCCNNNCTTTGCNNCAAAAAAA
AAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12325#0      CNGACGGCTTGGAGGAGGTGGAGGTGGAGGTGGTGGTGTCCGCTGCCCCCCGCAATAAAT 60
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      AANCCTACCTCCATGTTCCCACCCCCCTCTCTCTCTCTTCTCCGTCTCGCCTCGTCACCT 120
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      CACCTCGGCATCACCCAGGTGGGAGGGGGTCCGCCTTGACTTTTCGTGTTCGGGTTTGGG 180
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      TTTGAGTGCCGCATCTGCAAGCTTGTGCGAGGGGGGAATCTCTCTTCCTTGCTGTGGTGG 240
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      CGGCGGGCGGGAGGGCGGCGTTGATTTCGTTGGGGTTTGCGTTGCGTGCGGAGGACGGGG 300
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      TTGTGTTTGTGTGTGTGTTTGTGCTGATTTGGGCATTGGTGTTGGTGGTGGAGGAGGATG 360
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      GGGAACTGCGTGGCGAGGAGCGGGACGGCGGTGGATGCGGGTGGTGATGGAGGGGAGGAT 420
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      GGGAAGAGGCGGAGGAGGAGGTGGAAGGCGCCGCGGGAAGATCAGCTCGGGATGGTGCCC 480
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      GGCCGGATCTTCTCCAACGACGGCCGCAGCCGGACGGCGACGGTGTACACGCAGCAAGGG 540
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      CGCAAGGAGATCAACCAGGACGCCATGCTCGTCTGGGATGGGTTCGGCGGCGAGGACGAC 600
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      GGCGTGCTGTGCGGGGTGTTCGACGGGCACGGGCCGCACGGGCACGTGGTGGCGCGGAGG 660
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      GTCCGCGACTCGCTGCCGCTGAGGCTCATGTCCGCGGCGCGCGACAGCGGGGCGGACATG 720
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      CCGGCCGCCGCATGGAGGAAGGCCTTCGCGCGCGCCTACAAGGCCATGGACAAGGACCTC 780
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      CGGTCGCACCCTTCCCTCGATTGCTTCTGCAGCGGAAGCACTGCCGTCACCGTCCTCAAG 840
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      CTCGGCTCGGATCTCTACATGGCCAACATTGGGGACTCGCGCGCCGTGCTCGGCTCCAGG 900
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      GAGGCCACCGGCGGCGGCATGGTCGCCGTGCAGCTCACCGTTGATCTCAAGCCGGATGTC 960
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      CCCAGCGAAGCGGAGAGGATCAAGAAGTGCAGGGGCAGGGTGTTCGCGCTGCAGGACGAG 1020
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      CCGGAGGTGCCAAGGGTCTGGCTGCCGTTCGACGACGCGCCGGGCCTCGCGATGGCGCGA 1080
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      GCGTTCGGGGACTTCTGCCTGAAAGATTACGGGGTCATCTCGGTGCCGGAATTCTTCCAC 1140
consensus_12325#1      ----------------------------------------------ANTAGGTNNTTGNC 14
                                                                        *  *  *   *

consensus_12325#0      TGGTCTCTCACAGAAAAGGACCAGTTCGTCATTCTTGCATCGGATGGGGTATGGGATGTC 1200
consensus_12325#1      CGGATTTTCATGTTTTANAGA-AGGACATTNTATTTTGATTGNT--GGGTANGGANT--- 68
                        **  * ***      *     **  * *  *  **  ** *    ***** **  *   

consensus_12325#0      CTCAGCAATCAAGAGGCTGTTGATATAGTGTCCGCGTCCCCAAGCAGATCAAAGGCTGCA 1260
consensus_12325#1      CTTCACATTCAAGGGGTG--TGATATAGT-TTCGNNTCCCNAAGCAGATCAAAGN-TGCA 124
                       **   ** ***** **    ********* * **  **** *************  ****

consensus_12325#0      AAATCCCTTGTTGAGGCAGCCACTCGTGAATGGAAAACCAAATATCCAACATCCAAAATC 1320
consensus_12325#1      AAATCCNTTGTTGAG-CAACNATTNGTGAATGGAAAACCAAATATCCAACATCCAAAATC 183
                       ****** ******** ** * * * ***********************************

consensus_12325#0      GATGATTGCGCGGTTGTTTGCTTATATTTGGATGGAAAAATGGACCATGAGCGTGACTCA 1380
consensus_12325#1      GATGATTGCGCGGTTGTTTGCTTATATTTGGATGGAAAA-TGGACCATGAGCGTGANTCA 242
                       *************************************** **************** ***

consensus_12325#0      ACTGCCTCATTGGACAACATCAGTATTGAAGAGGGTTCAGTTGCAGATCCTAATGAACCT 1440
consensus_12325#1      ACTGCCTCATTGGACAACATCAGTATTGAAGAGGGTTCAGTTGCAGATCCTAATGAACCT 302
                       ************************************************************

consensus_12325#0      CAGGAGCAGGAGCCCACCTTAACTCGGAATTTCACAGTTAGGACAGTTGCAGGCAGCACG 1500
consensus_12325#1      CAGGAGCAGGAGCCCACCTTAACTCGGAATTTCACAGTTAGGACAGTTGCAGGCAGCACG 362
                       ************************************************************

consensus_12325#0      CAAGAGAAGACCTTAGCAGGGGTGGATGCGAGGATTGCTGGTGTAGCGAACGACCAAAAT 1560
consensus_12325#1      CAAGAGAAGACCTTAGCAGGGGTGGATGCGAGGATTGCTGGTGTAGCGAACGACCAAAAT 422
                       ************************************************************

consensus_12325#0      TGGTCAGGTCTCGATGGAGTGACACGGGTAAACTCACTTGTTCAGCTTCCTAGGTTTTCT 1620
consensus_12325#1      TGGTCAGGTCTCGATGGAGTGACACGGGTAAACTCACTTGTTCAGCTTCCTAGGTTTTCT 482
                       ************************************************************

consensus_12325#0      GAAGAGAGGGCAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCTAT 1680
consensus_12325#1      GAAGAGAGGGCAATTGGCTGAGCTGCCCATCTTATATTTACCCCCGTTATTTTCACCTAA 542
                       *********************************************************** 

consensus_12325#0      TGTTCTGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATGTGGGACGATCTTGTGATT 1740
consensus_12325#1      AAAAAAGAATTTTAGCGTAGTTGTTCTAGAGAAAGGTAGATTTGGGACGATCTTGTGATT 602
                             *********************************** ******************

consensus_12325#0      TGGTGCGGTACTTGGCAAGCGTTTCAGCCACTATGCATAGAAGTCGAGTTGCACGTTTTA 1800
consensus_12325#1      TGGTGCGGTACTTGGCAAGCGTTTCAGCCACTATGCATAGAAGTCGAGTTGCACGTTTTA 662
                       ************************************************************

consensus_12325#0      GCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGCAT 1860
consensus_12325#1      GCCCAACAAAACTGCACATTGCATAGGACAGAGGCTCTCTTTTCACCCATCTTGAGGCAT 722
                       ************************************************************

consensus_12325#0      GTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAA 1920
consensus_12325#1      GTCAACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAA 782
                       ************************************************************

consensus_12325#0      TTTTGCTGGGTTAAAACGAACAAAAGACGACGCCAAACACAGTGGCTAAACGCACGCCAG 1980
consensus_12325#1      TTTTGCTGGGTTAAAACTAACAAAAGACGACGCCAAACACAGTGGCTAAACGCACGCCAG 842
                       ***************** ******************************************

consensus_12325#0      GCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACCTGTAAATTCTCCACCGGCGCTTG 2040
consensus_12325#1      GCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACCTGTAAATTCTCCACCGGCGCTTG 902
                       ************************************************************

consensus_12325#0      CTTTGCTTTTGTAGAGAGGTGATGTCCAGACCATTTTCTCCGCTGCATGCTTAGCTTTTG 2100
consensus_12325#1      CTTTGCTTTTGTAGAGAGGTGATGTCCAGACCATTTTCTCCGCTGCATGCTTAGCTTTTG 962
                       ************************************************************

consensus_12325#0      TTGACACAGGGCGGTGCGCTCTGTCGATGTCGGATTGCCAATCTTTGCCCCCTTTGTTTT 2160
consensus_12325#1      TTGACACAGGGCGGTGCGCTCTGTCGATGTCGGNTTGCCNNNCTTTGCNNCAAAAAAAAA 1022
                       ********************************* *****   ******  *         

consensus_12325#0      GTTCGCGGTCTGTGCCCTTGCTTTTACTCTCCTGGAGCCATCATGCCACCGAGAAAAATG 2220
consensus_12325#1      AAAAAAAAAAAAAAAA-------------------------------------------- 1038
                                                                                   

consensus_12325#0      GCAGTCTCAATACTTTTAGGCCCCCTTTCATTCAAAGGGAATTCATAGAAATTTTAGAGG 2280
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      ATTTTATTTCTATAGGAATTTTTTCTACAAAGCCCTTTGAATGAAAGAAATGAACCCTAT 2340
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      GGAATCCTATGAAATTTTTATGGGATTTTAACAAGAGGTAAAACCTCATGGAAAAAATCC 2400
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      TTTGAGTCTTTATCTCTCCTTAAATTCCTGTGTTTTTTTGGTCCATTAAACGATCATTCC 2460
consensus_12325#1      ------------------------------------------------------------
                                                                                   

consensus_12325#0      TACAAAAAAAA 2471
consensus_12325#1      -----------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)