|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2260 fasta sequence
[ACACCACCAATCCCTAGCAGCAGCAGCAGCGGCGGCGGCGGGGGATCCAGCATGGAGCCAGCCCGACGATCCACCGCCGCGTCGGACGGCGGCGGCGGCTCGTCGGCGGCCGGATCGGACGGCGAGGACGACAGGTACCTCAGCGCCAGCTCCGCGCTCGGCACGCCCAGCTCCCTCGCCACCCTCCTCCCCTCCTCCGACCTCTGGGATCACCAGATGGACCTCCTCCTCCTCGACGACCCCGTCGCCGGCTTCCCCAAGGCCCACCAGCTGACCCGCCTCCATCCGCCGCCGGAGCCGCCGCGGCCCGATCCTCCCGCCCCCGCCGCGGCCGGCGACGCCGTTCTCCCGCGGCCGCCGGAGCCGGATCCCACCCAGGTGGACAACCTTGATGACAATCATTTATTTGATGATATGGTTCAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACAGATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTGATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATGGAGAAACGTTGAAAAAGAATCAAGTAAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGACTGTTTGTGTTCTTTGCTTGTCTCTAGTTATCCATTTGGAACACCCACTCCTCTGGTTAGTTTTTTGTCACCAGGGAGTCCTGCTTATGAGTATAGCTTGTTAAAAACTCTTATCCCAAGATCTTTGCAAAGGCTAAGCAGTGATTCACATTCCAAAGGCTCAAGCTGCAATGGAACTTCACACAAAGATTCTGCCTCAATGGGCAAGACTATATCACTTGTTGTGGAGGATAGGCCTCGGAAGTCCACTAGACAGTTGTTGGAGTTACAACACTACAATTGTGCTGGATGCCATAGGCATTTGGATGCTGGGCGAACAATGCTGCAAGAAATTGTCCAAACAATCGGATGGAACAAGCCTCGGTTTTGTGCTTACACTGGCCAATTGTTTTGTGCTTCTTGTCACACAAATGATACTGCAGTTCTGCCAGCAAAAGTGCTACACCACTGGGATTTCTCTTTATATCCTATTTCCCAGTTAGCAAAAGCATATTTGGATTCCATCTATGACCAGCCTATGCTCTGTGTAAGTGCTGTCAATCCTTTCCTCTTTGCAAAGGTGCCAGCTCTGCTTAATATTATGAGTATTCGGAAGAAAATAGCAGCTATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTTTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTC-TTTGCCAGATACGTCTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCATAAAA------AAAAAAAAAAAAAAA]
[+] EMBL AK099741 [ACACCACCAATCCCTAGCAGCAGCAGCAGCGGCGGCGGCGGGGGATCCAGCATGGAGCCAGCCCGACGATCCACCGCCGCGTCGGACGGCGGCGGCGGCTCGTCGGCGGCCGGATCGGACGGCGAGGACGACAGGTACCTCAGCGCCAGCTCCGCGCTCGGCACGCCCAGCTCCCTCGCCACCCTCCTCCCCTCCTCCGACCTCTGGGATCACCAGATGGACCTCCTCCTCCTCGACGACCCCGTCGCCGGCTTCCCCAAGGCCCACCAGCTGGCCCGCCTCCATCCGCCGCCGGAGCCGCCGCGGCCCGATCCTCCCGCCCCCGCCGCGGCCGGCGACGCCGTTCTCCCGCGGCCGCCGGAGCCGGATCCCACCCAGGTGGACAACCTTGATGACAATCATTTATTTGATGATATGGTTCAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACAGATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTTATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAAAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATGGAGAAACGTTGAAAAAGAATCAAGTAAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGACTGTTTGTGTTCTTTGCTTGTCTCTAGTTATCCATTTGGAACACCCACTCCTCTGGTTAGTTTTTTGTCACCAGGGAGTCCTGCTTATGAGTATAGCTTGTTAAAAACTCTTATCCCAAGATCTTTGCAAAGGCTAAGCAGTGATTCACATTCCAAAGGCTCAAGCTGCAATGGAACTTCACACAAAGATTCTGCCTCAATGGGCAAGACTATATCACTTGTTGTGGAGGATAGGCCTCGGAAGTCCACTAGACAGTTGTTGGAGTTACAACACTACAATTGTGCTGGATGCCATAGGCATTTGGATGCTGGGCGAACAATGCTGCAAGAAATTGTCCAAACAATCGGATGGAACAAGCCTCGGTTTTGTGCTTACACTGGCCAATTGTTTTGTGCTTCTTGTCACACAAATGATACTGCAGTTCTGCCAGCAAAAGTGCTACACCACTGGGATTTCTCTTTATATCCTATTTCCCAGTTAGCAAAAGCATATTTGGATTCCATCTATGACCAGCCTATGCTCTGTGTAAGTGCTGTCAATCCTTTCCTCTTTGCAAAGGTGCCAGCTCTGCTTAATATTATGAGTATTCGGAAGAAAATAGCAGCTATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTTTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTC TTTGCCAGATACGTCTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTG ]
[+] EMBL AK070641 [ CAGCGGCGGCGGCGGGGGATCCAGCATGGAGCCAGCCCGACGATCCACCGCCGCGTCGGACGGCGGCGGCGGCTCGTCGGCGGCCGGATCGGACGGCGAGGACGACAGGTACCTCAGCGCCAGCTCCGCGCTCGGCACGCCCAGCTCCCTCGCCACCCTCCTCCCCTCCTCCGACCTCTGGGATCACCAGATGGACCTCCTCCTCCTCGACGACCCCGTCGCCGGCTTCCCCAAGGCCCACCAGCTGACCCGCCTCCATCCGCCGCCGGAGCCGCCGCGGCCCGATCCTCCCGCCCCCGCCGCGGCCGGCGACGCCGTTCTCCCGCGGCCGCCGGAGCCGGATCCCACCCAGGTGGACAACCTTGATGACAATCATTTATTTGATGATATGGTTCAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACAGATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTGATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATGGAGAAACGTTGAAAAAGAATCAAGTAAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGACTGTTTGTGTTCTTTGCTTGTCTCTAGTTATCCATTTGGAACACCCACTCCTCTGGTTAGTTTTTTGTCACCAGGGAGTCCTGCTTATGAGTATAGCTTGTTAAAAACTCTTATCCCAAGATCTTTGCAAAGGCTAAGCAGTGATTCACATTCCAAAGGCTCAAGCTGCAATGGAACTTCACACAAAGATTCTGCCTCAATGGGCAAGACTATATCACTTGTTGTGGAGGATAGGCCTCGGAAGTCCACTAGACAGTTGTTGGAGTTACAACACTACAATTGTGCTGGATGCCATAGGCATTTGGATGCTGGGCGAACAATGCTGCAAGAAATTGTCCAAACAATCGGATGGAACAAGCCTCGGTTTTGTGCTTACACTGGCCAATTGTTTTGTGCTTCTTGTCACACAAATGATACTGCAGTTCTGCCAGCAAAAGTGCTACACCACTGGGATTTCTCTTTATATCCTATTTCCCAGTTAGCAAAAGCATATTTGGATTCCATCTATGACCAGCCTATGCTCTGTGTAAGTGCTGTCAATCCTTTCCTCTTTGCAAAGGTGCCAGCTCTGCTTAATATTATGAGTATTCGGAAGAAAATAGCAGCTATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTTTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTC TTTGCCAGATACGTCTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCAT ]
[+] EMBL CB668209 [ GGGGGATCCAGCATGGAGCCAGCCCGACGATCCACCGCCGCGTCGGACGGCGGCGGCGGCTCGTCGGCGGCCGGATCGGACGGCGAGGACGACAGGTACCTCAGCGCCAGCTCCGCGCTCGGCACGCCCAGCTCCCTCGCCACCCTCCTCCCCTCCTCCGACCTCTGGGATCACCAGATGGACCTCCTCCTCCTCGACGACCCCGTCGCCGGCTTCCCCAAGGCCCACCAGCTGACCCGCCTCCATCCGCCGCCGGAGCCGCCGCGGCCCGATCCTCCCGCCCCCGCCGCGGCCGGCGACGCCGTTCTCCCGCGGCCGCCGGAGCCGGATCCCACCCAGGTGGACAACCTTGATGACAATCATTTATTTGATGATATGGTTCAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACAGATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTGATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCC ]
[+] EMBL CF323438 [ GTTCAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACAGATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTGATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATGGAGAAACGTTGAAAAAGAATCAAGTAAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGACTGTTTGTGTTCTTTGCTTGTCTCTAGTTATCCATTTGGAACACCCACTCCTCTGGTTAGTTTTTTGTCACCAGGGAGTCCTGCTTATGAGTATAGCTTGTTAAAAACTCTTATCCCAAGATCTTTGC AAGGCTAAGCAGTGA ]
[+] EMBL OSC689 [ AATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCCTCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATTGATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGAATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGACTGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTGTTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATNGAGAAACGTTGAAAAAGANTCAAGTAAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGACTG TTGTGNTCTTTGCTTGTCTCTAG TATCCATT ]
[-] EMBL CB620575 [ TATTATGAGTATTCGGAAGAAAATAGCAGCTATGCTTCCAGGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTGTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATATTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCAAAAAAAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATACAACCCCCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTC TTTGCCAGATACGTGTACATGAGCTCAGT ]
[+] EMBL AU172718 [ CAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTCTTTTGCCAGATACGTCTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAANAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCAAAAAA AAAAAAAAA ]
[+] EMBL CA756618 [ GCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGGTTC TTTGCCAGATACGTCTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCATCAAACGCTTCANAAAAAAAAAAAAA]
consensusID : consensus_12327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence
[TATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTTTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTTTCCTCATCATCTGGTTTTTTTTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTTTTATGGGTTCTTTGCCAGATACGTTTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCATCAAACGCTTCAAAGGATTCAGTGCTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAGA]
[-] EMBL CB668210 [TATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGAGCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTTTCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTTTTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGCGTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTTTCCTCATCATCTGGTTTTTTTTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTTTTATGGGTTCTTTGCCAGATACGTTTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCATCAAACGCTTCAAAGGATTCAGTGCTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAGA]
consensusID : consensus_12327#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[TCTGGTGTTGCAGTTGGANATCGNACATTTTTTCCTTTCNGGGGAGGAGNACAAGGGGTTTGGNGGATCATNTCCANAACAAGCTTCAGGAAAAAGATATTCCTTGCGGTAGGGTGTGCCANCAAGGCAGGAAATCGTGCGTTGAACAAGCTGTGCGGGACGATGCAAGCAGACCATCAACTCAGTGATCCAACCNTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGTTCTTTGCCAGATACGTNTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCATCAAACGCTTCAAAAAAAAAA]
[+] EMBL AA753384 [TCTGGTGTTGCAGTTGGANATCGNACATTTTTTCCTTTCNGGGGAGGAGNACAAGGGGTTTGGNGGATCATNTCCANAACAAGCTTCAGGAAAAAGATATTCCTTGCGGTAGGGTGTGCCANCAAGGCAGGAAATCGTGCGTTGAACAAGCTGTGCGGGACGATGCAAGCAGACCATCAACTCAGTGATCCAACCNTCATCGTTCTCCTCATCATCTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAAATAGCAGCCCTGTAATTCTTATGGTTCTTTGCCAGATACGTNTACATGAGCTCAGTTGTATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGATTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAGCATTTTTGTGCGTTTGTTTGCATCAAACGCTTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12327#0 ACACCACCAATCCCTAGCAGCAGCAGCAGCGGCGGCGGCGGGGGATCCAGCATGGAGCCA 60
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 GCCCGACGATCCACCGCCGCGTCGGACGGCGGCGGCGGCTCGTCGGCGGCCGGATCGGAC 120
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 GGCGAGGACGACAGGTACCTCAGCGCCAGCTCCGCGCTCGGCACGCCCAGCTCCCTCGCC 180
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 ACCCTCCTCCCCTCCTCCGACCTCTGGGATCACCAGATGGACCTCCTCCTCCTCGACGAC 240
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 CCCGTCGCCGGCTTCCCCAAGGCCCACCAGCTGACCCGCCTCCATCCGCCGCCGGAGCCG 300
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 CCGCGGCCCGATCCTCCCGCCCCCGCCGCGGCCGGCGACGCCGTTCTCCCGCGGCCGCCG 360
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 GAGCCGGATCCCACCCAGGTGGACAACCTTGATGACAATCATTTATTTGATGATATGGTT 420
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 CAAGAGATGGAACATATTCTTCTCAATTCAGGGGAGCCCCATGAAAGTGCATCTTTTACA 480
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 GATTATCGCGCAAATAATTCTTCCCAAGCTCATCATTTCAGAGATGGAAGCACCACTGCC 540
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 TCTACTTCTGGTACAGATGATGCTTATGTATATCCCCTTCCTCACCATCCTTCAAAAATT 600
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 GATTGGGTGGAGGTTGTGGGAGCAAAGCAAAGAACAGGAGATGTTTCTTTTGGTGAGCGA 660
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 ATGGTTGGGGTCAGAGAATATACTGTTTATTTGTTAAAAGTCAAGAGCGGAGAAGATGAC 720
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 TGGGAAATTGAGAGGCGGTACCGTGAATTTTATGCTCTATACCAACAACTCAAGCTCTTG 780
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 TTTGCTGAGAAAGGTTTCAGTCTGCCTCCTGCATGGAGAAACGTTGAAAAAGAATCAAGT 840
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 AAATTATTTGGGAATGCATCCCCAGACATCGTCAATGAGAGAAGTAGTCTAATTCAAGAC 900
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 TGTTTGTGTTCTTTGCTTGTCTCTAGTTATCCATTTGGAACACCCACTCCTCTGGTTAGT 960
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 TTTTTGTCACCAGGGAGTCCTGCTTATGAGTATAGCTTGTTAAAAACTCTTATCCCAAGA 1020
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 TCTTTGCAAAGGCTAAGCAGTGATTCACATTCCAAAGGCTCAAGCTGCAATGGAACTTCA 1080
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 CACAAAGATTCTGCCTCAATGGGCAAGACTATATCACTTGTTGTGGAGGATAGGCCTCGG 1140
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 AAGTCCACTAGACAGTTGTTGGAGTTACAACACTACAATTGTGCTGGATGCCATAGGCAT 1200
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 TTGGATGCTGGGCGAACAATGCTGCAAGAAATTGTCCAAACAATCGGATGGAACAAGCCT 1260
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 CGGTTTTGTGCTTACACTGGCCAATTGTTTTGTGCTTCTTGTCACACAAATGATACTGCA 1320
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 GTTCTGCCAGCAAAAGTGCTACACCACTGGGATTTCTCTTTATATCCTATTTCCCAGTTA 1380
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 GCAAAAGCATATTTGGATTCCATCTATGACCAGCCTATGCTCTGTGTAAGTGCTGTCAAT 1440
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 CCTTTCCTCTTTGCAAAGGTGCCAGCTCTGCTTAATATTATGAGTATTCGGAAGAAAATA 1500
consensus_12327#1 ------------------------------------------------------------
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 GCAGCTATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGA 1560
consensus_12327#1 -----TATGCTTCCATGTGTCCAATGTCCTTTCCGGAATTCCATATTTAGAGGACTAGGA 55
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 GCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTT 1620
consensus_12327#1 GCTCGAAGATACCTTCTTGATGGGAATGACTTCTTTGCGCTCCGTGACCTTGTTGATCTT 115
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 TCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTT 1680
consensus_12327#1 TCGAAAGGGGCTTTTGCAGCGCTTCCCGTTAAGGTGCAAACAATATCAAATCGGATACTT 175
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 TTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGG 1740
consensus_12327#1 TTACACATCACAGAACAATGCCTTGTGTGCTACGACTCTGGCGTTCCTTGTGCTGCTCGG 235
consensus_12327#2 ------------------------------------------------------------
consensus_12327#0 CAAGCTTGTGATG--ATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAA 1798
consensus_12327#1 CAAGCTTGTGATG--ATCCGCTAGCACTCATCTTTCCGTTTCAGGAGGATGAAGCTACAA 293
consensus_12327#2 ---TCTGGTGTTGCAGTTGGANATCGNACATTTTTTCCTTTCNGG-GGAGGAGN--ACAA 54
** *** ** * * * * *** *** * **** ** *** ** ****
consensus_12327#0 AGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTC 1858
consensus_12327#1 AGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTC 353
consensus_12327#2 GG---GGTTTG-GNGGATCA--TNTCCANAA-CAA-GCTTCAGGAAAAAGA---TAT-TC 102
* **** * * ****** **** ** *** ************ * *** **
consensus_12327#0 CTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGC 1918
consensus_12327#1 CTTGCGGTAAGGGTGCTGCCAGCAAAGGCAGGAAAATCGTTGCGCTTGAACAAGCTGTGC 413
consensus_12327#2 CTTGCGGTA-GGGTG-TGCCANCAA-GGCAGGAAA-TCGT-GCG-TTGAACAAGCTGTGC 156
********* ***** ***** *** ********* **** *** ***************
consensus_12327#0 GTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTCTCCTCATCAT 1978
consensus_12327#1 GTGACGATGCAAGCAGACCATCAACTCAGTTGATCCAACCCTCATCGTTTTCCTCATCAT 473
consensus_12327#2 GGGACGATGCAAGCAGACCATCAACTCAGT-GATCCAACCNTCATCGTTCTCCTCATCAT 215
* **************************** ********* ******** **********
consensus_12327#0 CTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAA 2038
consensus_12327#1 CTGGTTTTTTTTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAA 533
consensus_12327#2 CTGGTTTTTTCTCCGATATCATCTCAAAGGCTAGGCCAGATAAACTTTGGAAACCAAGAA 275
********** *************************************************
consensus_12327#0 ATAGCAGCCCTGTAATTCTTATGGGTTCTTTGCCAGATACGTCTACATGAGCTCAGTTGT 2098
consensus_12327#1 ATAGCAGCCCTGTAATTTTTATGGGTTCTTTGCCAGATACGTTTACATGAGCTCAGTTGT 593
consensus_12327#2 ATAGCAGCCCTGTAATTCTTATGG-TTCTTTGCCAGATACGTNTACATGAGCTCAGTTGT 334
***************** ****** ***************** *****************
consensus_12327#0 ATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGA 2158
consensus_12327#1 ATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGA 653
consensus_12327#2 ATGTTCATGTTCCATTTATATTGTTGTGTTTTTCGCCACATAAAGTGTGTGCCTTTGAGA 394
************************************************************
consensus_12327#0 TTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAG 2218
consensus_12327#1 TTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAG 713
consensus_12327#2 TTGTAAGAGATGCCGTGGAGCATTTTTAATTCATATTGTTTTGTACGTAATAAAATGTAG 454
************************************************************
consensus_12327#0 CATTTTTGTGCGTTTGTTTGCATAAAAAAAAAAAAAAAAAAA------------------ 2260
consensus_12327#1 CATTTTTGTGCGTTTGTTTGCATCAAACGCTTCAAAGGATTCAGTGCTTTTTTTTTAAAA 773
consensus_12327#2 CATTTTTGTGCGTTTGTTTGCATCAAACGCTTCAAAAAAAAAA----------------- 497
*********************** *** *** *
consensus_12327#0 --------------------
consensus_12327#1 AAAAAAAAAAAAAAAAAAGA 793
consensus_12327#2 --------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||