These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [GAAGCCAAGAAATCATCTCTCCATCCATTGCTCGCAGATGGACAAGATGATGCGGAGCCAGGGCGGCGGCGGTGTCGCCGGCGAGTACCAGTACTACTACCATGGCGGCACCGGCGCCGGCGGCCTCGTCGACCAGGAGATGGCCGTGGCGGCGCCGGCGACGTCCGACGACGACGGAGTGGTGCTCCTCATGGAGCTTCTTGATGGCGAGGAGGAGATGGGGGACGACTACTCGCCGTCGCCGGCGGCAACGACCGACGGCGACGGCGACGCCGATCAGCTGAGCCGCGTGATCCGGTCGCTCGAGGCCGAGATCGGCGGTGGCGGCGCCACCGGGGCGGTGGCGGCGGCGACGGCGACGAGGGACAGCGACGAGAGCATGGCCGCCGCCGGGCCGGCGAGCGACGACGACGGCGCAGCAGCAGCTGGGATCAGACGGCTGGAGGACATGTTTTCCGACGACCTCGACGGCTACGGCGGCGGGGCGTTCGGGTACGGCTGGCCGCCGGAGTTGGCGTTGCCGGCGGCGGCGAGCTGGTGCGTGTACGACGACGAGCATTTGTACTATGGAGATGGCTCCATTGATGAGCAAGTGTACAGCCCCTTGTGGGAGCAATAAATATGAATAAATCGATGAATTGTTGTAGAAATTAGGGAAATAGGTTGATGTGCATAGAGTAAATTATGAAAATCCGTGGATATATATCACAGTGTTAGCATTTCTCCAGAAAAAATTGAAAAAAAAATAT] [+] EMBL AK069877 [GAAGCCAAGAAATCATCTCTCCATCCATTGCTCGCAGATGGACAAGATGATGCGGAGCCAGGGCGGCGGCGGTGTCGCCGGCGAGTACCAGTACTACTACCATGGCGGCACCGGCGCCGGCGGCCTCGTCGACCAGGAGATGGCCGTGGCGGCGCCGGCGACGTCCGACGACGACGGAGTGGTGCTCCTCATGGAGCTTCTTGATGGCGAGGAGGAGATGGGGGACGACTACTCGCCGTCGCCGGCGGCAACGACCGACGGCGACGGCGACGCCGATCAGCTGAGCCGCGTGATCCGGTCGCTCGAGGCCGAGATCGGCGGTGGCGGCGCCACCGGGGCGGTGGCGGCGGCGACGGCGACGAGGGACAGCGACGAGAGCATGGCCGCCGCCGGGCCGGCGAGCGACGACGACGGCGCAGCAGCAGCTGGGATCAGACGGCTGGAGGACATGTTTTCCGACGACCTCGACGGCTACGGCGGCGGGGCGTTCGGGTACGGCTGGCCGCCGGAGTTGGCGTTGCCGGCGGCGGCGAGCTGGTGCGTGTACGACGACGAGCATTTGTACTATGGAGATGGCTCCATTGATGAGCAAGTGTACAGCCCCTTGTGGGAGCAATAAATATGAATAAATCGATGAATTGTTGTAGAAATTAGGGAAATAGGTTGATGTGCATAGAGTAAATTATGAAAATCCGTGGATATATATCACAGTGTTAGCATTTCTCCAGAAAAAATTGAAAAAAAAATAT] consensusID : consensus_1235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence [ATCCATTGCTCGCAGATGGACAAGATGATGCTGGAGCCAGGGCGGCGGNGGTGTCGCCGGNTGAGTACCAGTACTACTACCATGGCGGNACCGGTGCCGGCGGCCTCGTNGACCAGGAGATGGCCGTGGCCGGCGCCGGCGACGTCCGACGACGACGGAGNCGGTGCTNCCCGATGGAGC] [+] EMBL AU198160 [ATCCATTGCTCGCAGATGGACAAGATGATGCTGGAGCCAGGGCGGCGGNGGTGTCGCCGGNTGAGTACCAGTACTACTACCATGGCGGNACCGGTGCCGGCGGCCTCGTNGACCAGGAGATGGCCGTGGCCGGCGCCGGCGACGTCCGACGACGACGGAGNCGGTGCTNCCCGATGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1235#0 GAAGCCAAGAAATCATCTCTCCATCCATTGCTCGCAGATGGACAAGATGATGC-GGAGCC 59 consensus_1235#1 ----------------------ATCCATTGCTCGCAGATGGACAAGATGATGCTGGAGCC 38 ******************************* ****** consensus_1235#0 AGGGCGGCGGCGGTGTCGCCGGC-GAGTACCAGTACTACTACCATGGCGGCACCGGCGCC 118 consensus_1235#1 AGGGCGGCGGNGGTGTCGCCGGNTGAGTACCAGTACTACTACCATGGCGGNACCGGTGCC 98 ********** *********** ************************** ***** *** consensus_1235#0 GGCGGCCTCGTCGACCAGGAGATGGCCGTGGC-GGCGCCGGCGACGTCCGACGACGACGG 177 consensus_1235#1 GGCGGCCTCGTNGACCAGGAGATGGCCGTGGCCGGCGCCGGCGACGTCCGACGACGACGG 158 *********** ******************** *************************** consensus_1235#0 AGT-GGTGCTCCTC-ATGGAGCTTCTTGATGGCGAGGAGGAGATGGGGGACGACTACTCG 235 consensus_1235#1 AGNCGGTGCTNCCCGATGGAGC-------------------------------------- 180 ** ****** * * ******* consensus_1235#0 CCGTCGCCGGCGGCAACGACCGACGGCGACGGCGACGCCGATCAGCTGAGCCGCGTGATC 295 consensus_1235#1 ------------------------------------------------------------ consensus_1235#0 CGGTCGCTCGAGGCCGAGATCGGCGGTGGCGGCGCCACCGGGGCGGTGGCGGCGGCGACG 355 consensus_1235#1 ------------------------------------------------------------ consensus_1235#0 GCGACGAGGGACAGCGACGAGAGCATGGCCGCCGCCGGGCCGGCGAGCGACGACGACGGC 415 consensus_1235#1 ------------------------------------------------------------ consensus_1235#0 GCAGCAGCAGCTGGGATCAGACGGCTGGAGGACATGTTTTCCGACGACCTCGACGGCTAC 475 consensus_1235#1 ------------------------------------------------------------ consensus_1235#0 GGCGGCGGGGCGTTCGGGTACGGCTGGCCGCCGGAGTTGGCGTTGCCGGCGGCGGCGAGC 535 consensus_1235#1 ------------------------------------------------------------ consensus_1235#0 TGGTGCGTGTACGACGACGAGCATTTGTACTATGGAGATGGCTCCATTGATGAGCAAGTG 595 consensus_1235#1 ------------------------------------------------------------ consensus_1235#0 TACAGCCCCTTGTGGGAGCAATAAATATGAATAAATCGATGAATTGTTGTAGAAATTAGG 655 consensus_1235#1 ------------------------------------------------------------ consensus_1235#0 GAAATAGGTTGATGTGCATAGAGTAAATTATGAAAATCCGTGGATATATATCACAGTGTT 715 consensus_1235#1 ------------------------------------------------------------ consensus_1235#0 AGCATTTCTCCAGAAAAAATTGAAAAAAAAATAT 749 consensus_1235#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||