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Oryza sativa
cluster # 12358 cluster # 12358       Sequences # 10       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12358#0 length = 1424 sequences # 5  
consensus_12358#1 length = 1103 sequences # 3  
consensus_12358#2 length = 686 sequences # 1  
consensus_12358#3 length = 586 sequences # 1  

consensusID : consensus_12358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1424
fasta sequence
                              [GCCGTCGAATAGCGTCGGCGACAACGACGTGGACGCGGCCGTGCAGCGGGGGGACGACGACGGTGACAACTGGCTCCGCGACATCCACATGCTGTTCGACGAGGACGACGACGACGCCGCCGCCGCCGACGCCAACGAGCGTGTCGGTGGCGTGGACATCACCATCAAGGGGAGGAGGACGGACGACGGCGGCGTCTACCTCGGCCTGCGCATCGCCGACAAGAACGGCACAGGGCGTGGCCGGATAATCTGCTTCCGGTTCGACACCGAGGCCGACACGGCGATGACCGTGGCGGCGGAGATGGTCGCCGAGCTGGACATCACCGACCACGAGGTGACTCGCATCGCCCAGCTGATCGACGGCAAGGTCGCCGCGCTGGTGCCGGGCTGGAGGCCGGGTCCAGCGACGGACGACGACGACGACGACGATCTCGTCGGCGGCGGCGATGATCCGGACGCGCCGGGCGGCGCCGCCGCCGCCTGCTGCAAGAACTGCCGGCCGGCGGCGTCGTCGTCGTCGTCCTGCGGCTCGCTCGTCGACTTCATGTCATCGGCGGCGGCGGCGGAGCGCCATGGCTGCAGGCGGTGCGCCGAGCTGCACGGCCGGTTTGAGGAGATCACGTTCCAAGCCGACGACGACGAAGAGGAGCAGCATTTGCAGGGGAGCTCCTCTGACACCGGAGGCAGCAACCATGAGCAGCACGCCATGGGC-AAGGACAAGGAGGTCA-TGAACAT-CAATGGCATTG-CACAAGATGGCA-CAGTACAAGGTTC-AGAACAG-CCATGATCAGTAATTCAGTATGATGATGATGAACAT-CCGAAGATCGAGCAATTCGACGCTGATAGGCGATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGCAATGGCGCGAGTCGGTGCCGCCACCATGATCATGACCATGGTAGCTCAAAGGATTCATGATCATTGTGAGGGGGAATTGCTCATTGTGAGGGGGAATTGCTGACAGCAATCTCGATCAGCCGCTGCTCACTTTCAGAGGTTACCTTGCCGACACATTGCAAGAGCAACAAAGTCTGTACTGTTGAACAATGCTACTGACGTTCGACATGCCCTTCTGACAAAGTAAATCTACAGTTTCAAGATTGG-ATTTGCTCGTCTTTTTTTCAGAGATTTAGCATATATTGTAGGGAAGAAACTGAAAGATGTAGTATAACGTTTTGTGACTGTGCTATGAATCTGAAGAAGATAGGGTACAGTTTAGGTAGGCCAAGTGCAATTACTTCCAATCTTCATTGGCTTCAGTTAGTTACATGCATGGCTGTATCTAGCATTCTCTGACCATAAATCAGTAGTGCAAGAAAGTGCAATCAGGAAAGATGCATATGTTTTTCATTCATATTTGGTACGTCTCTTATTCAAAGAAGAAATA]

[+] EMBL AK100930             [GCCGTCGAATAGCGTCGGCGACAACGACGTGGACGCGGCCGTGCAGCGGGGGGACGACGACGGTGACAACTGGCTCCGCGACATCCACATGCTGTTCGACGAGGACGACGACGACGCCGCCGCCGCCGACGCCAACGAGCGTGTCGGTGGCGTGGACATCACCATCAAGGGGAGGAGGACGGACGACGGCGGCGTCTACCTCGGCCTGCGCATCGCCGACAAGAACGGCACAGGGCGTGGCCGGATAATCTGCTTCCGGTTCGACACCGAGGCCGACACGGCGATGACCGTGGCGGCGGAGATGGTCGCCGAGCTGGACATCACCGACCACGAGGTGACTCGCATCGCCCAGCTGATCGACGGCAAGGTCGCCGCGCTGGTGCCGGGCTGGAGGCCGGGTCCAGCGACGGACGACGACGACGACGACGATCTCGTCGGCGGCGGCGATGATCCGGACGCGCCGGGCGGCGCCGCCGCCGCCTGCTGCAAGAACTGCCGGCCGGCGGCGTCGTCGTCGTCGTCCTGCGGCTCGCTCGTCGACTTCATGTCATCGGCGGCGGCGGCGGAGCGCCATGGCTGCAGGCGGTGCGCCGAGCTGCACGGCCGGTTTGAGGAGATCACGTTCCAAGCCGACGACGACGAAGAGGAGCAGCATTTGCAGGGGAGCTCCTCTGACACCGGAGGCAGCAACCATGAGCAGCACGCCATGGGC AAGGACAAGGAGGTCA TGAACAT CAATGGCATTG CACAAGATGGCA CAGTACAAGGTTC AGAACAG CCATGATCAGTAATTCAGTATGATGATGATGAACAT CCGAAGATCGAGCAATTCGACGCTGATAGGCGATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGCAATGGCGCGAGTCGGTGCCGCCACCATGATCATGACCATGGTAGCTCAAAGGATTCATGATCATTGTGAGGGGGAATTGCTCATTGTGAGGGGGAATTGCTGACAGCAATCTCGATCAGCCGCTGCTCACTTTCAGAGGTTACCTTGCCGACACATTGCAAGAGCAACAAAGTCTGTACTGTTGAACAATGCTACTGACGTTCGACATGCCCTTCTGACAAAGTAAATCTACAGTTTCAAGATTGG ATTTGCTCGTCTTTTTTTCAGAGATTTAGCATATATTGTAGGGAAGAAACTGAAAGATGTAGTATAACGTTTTGTGACTGTGCTATGAATCTGAAGAAGATAGGGTACAGTTTAGGTAGGCC                                                                                                                                                                 ]
[+] EMBL AK072273             [GCCGTCGAATAGCGTCGGCGACAACGACGTGGACGCGGCCGTGCAGCGGGGGGACGACGACGGTGACAACTGGCTCCGCGACATCCACATGCTGTTCGACGAGGACGACGACGACGCCGCCGCCGCCGACGCCAACGAGCGTGTCGGTGGCGTGGACATCACCATCAAGGGGAGGAGGACGGACGACGGCGGCGTCTACCTCGGCCTGCGCATCGCCGACAAGAACGGCACAGGGCGTGGCCGGATAATCTGCTTCCGGTTCGACACCGAGGCCGACACGGCGATGACCGTGGCGGCGGAGATGGTCGCCGAGCTGGACATCACCGACCACGAGGTGACTCGCATCGCCCAGCTGATCGACGGCAAGGTCGCCGCGCTGGTGCCGGGCTGGAGGCCGGGTCCAGCGACGGACGACGACGACGACGACGATCTCGTCGGCGGCGGCGATGATCCGGACGCGCCGGGCGGCGCCGCCGCCGCCTGCTGCAAGAACTGCCGGCCGGCGGCGTCGTCGTCGTCGTCCTGCGGCTCGCTCGTCGACTTCATGTCATCGGCGGCGGCGGCGGAGCGCCATGGCTGCAGGCGGTGCGCCGAGCTGCACGGCCGGTTTGAGGAGATCACGTTCCAAGCCGACGACGACGAGGAGGAGCAGCATTTGCAGGGGAGCTCCTCTGACACCGGAGGCAGCAACCATGAGCAGCACGCCATGGGC AAGGACAAGGAGGTCA TGAACAT CAATGGCATTG CACAAGATGGCA CAGTACAAGGTTC AGAACAG CCATGATCAGTAATTCAGTATGATGATGATGAACAT CCGAAGATCGAGCAATTCGACGCTGATAGGCGATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGCAATGGCGCGAGTCGGTGCCGCCACCATGATCATGACCATGGTAGCTCAAAGGATTCATGATCATTGTGAGGGGGAATTGCTCATTGTGAGGGGGAATTGCTGACAGCAATCTCGATCAGCCGCTGCTCACTTTCAGAGGTTACCTTGCCGACACATTGCAAGAGCAACAAAGTCTGTACTGTTGAACAATGCTACTGACGTTCGACATGCCCTTCTGACAAAGTAAATCTACAGTTTCAAGATTGG ATTTGCTCGTCTTTTTTTCAGAGATTTAGCATATATTGTAGGGAAGAAACTGAAAGATGTAGTATAACGTTTTGTGACTGTGCTATGAATCTGAAGAAGATAGGGTACAGTT                                                                                                                                                                           ]
[+] EMBL AK060552             [                                                                                                                                                                                                                               attgtggCAGGGCGTGGCCGGATAATCTGCTTCCGGTTCGACACCGAGGCCGACACGGCGATGACCGTGGCGGCGGAGATGGTCGCCGAGCTGGACATCACCGACCACGAGGTGACTCGCATCGCCCAGCTGATCGACGGCAAGGTCGCCGCGCTGGTGCCGGGCTGGAGGCCGGGTCCAGCGACGGACGACGACGACGACGACGATCTCGTCGGCGGCGGCGATGATCCGGACGCGCCGGGCGGCGCCGCCGCCGCCTGCTGCAAGAACTGCCGGCCGGCGGCGTCGTCGTCGTCGTCCTGCGGCTCGCTCGTCGACTTCATGTCATCGGCGGCGGCGGCGGAGCGCCATGGCTGCAGGCGGTGCGCCGAGCTGCACGGCCGGTTTGAGGAGATCACGTTCCAAGCCGACGACGACGAAGAGGAGCAGCATTTGCAGGGGAGCTCCTCTGACACCGGAGGCAGCAACCATGAGCAGCACGCCATGGGC AAGGACAAGGAGGTCA TGAACAT CAATGGCATTG CACAAGATGGCA CAGTACAAGGTTC AGAACAG CCATGATCAGTAATTCAGTATGATGATGATGAACAT CCGAAGATCGAGCAATTCGACGCTGATAGGCGATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGCAATGGCGCGAGTCGGTGCCGCCACCATGATCATGACCATGGTAGCTCAAAGGATTCATGATCATTGTGAGGGGGAATTGCTCATTGTGAGGGGGAATTGCTGACAGCAATCTCGATCAGCCGCTGCTCACTTTCAGAGGTTACCTTGCCGACACATTGCAAGAGCAACAAAGTCTGTACTGTTGAACAATGCTACTGACGTTCGACATGCCCTTCTGACAAAGTAAATCTACAGTTTCAAGATTGG ATTTGCTCGTCTTTTTTTCAGAGATTTAGCATATATTGTAGGGAAGAAACTGAAAGATGTAGTATAACGTTTTGTGACTGTGCTATGAATCTGAAGAAGATAGGGTACAGTTTAGGTAGGCCAAGTGCAATTACTTCCAATCTTCATTGGCTTCAGTTAGTTACATGCATGGCTGTATCTAGCATTCTCTGACCATAAATCAGTAGTGCAAGAAAGTGCAATCAGGAAAGATGCATATGTTTTTCATTCATATTTGGTACGTCTCTTATTCAAAGAAGAAATA]
[+] EMBL AU083555             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACCATGAGCAGCACGCCATGGGCAAAGGACAAGGAGGTCATTGACCATCCAATGGCATTGCCACAAGATGGCACCAGTACAAGGTTCAAGAACAGCCCATGATCAGTAATTCAGTATGATGATGATGAACATCCCGAAGATCGAGCAATTCGACGCTGATAGGCGATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGCAATGGCGCGAGTCGGTGCCGCCACCATGATCATGACCATGGTAGCTCAAAGGATTCATGATCATTGTGAGGGGGAATTGCTCATTGTGAGGGGGAATTGCTGACAGCAATCTCGATCAGCCGCTGCTCACTTTCAGAGGTTACCTTGCCGACACATTGCAAGAGCAACAAAGTCTGTACTGTTGAACAATGCTACTGACGTTCGACATGCCCTTCTGACAAAGTAAATCTACAGTTTCAAGATTGG ATTTGCTCGTCTTTTTTTCAGAGATTTAGCATATATTGTAGGGAAGAAACTGAAAGATGTAGTATAACGTTTTGTGACTGTGCTATGAATCTGAAGAAGATAGGGTACAGTTTAGGTAGGCCAAGTGCAATTACTTCCAATCTTCATTGGCTTCAGTTAGTTACATGCATGGCTGTATCTAGCATTCTCTGACCATAAATCAGTAGTGCAAGAAAGTGCAATCAGGAAAaa                                                    ]
[+] EMBL AU173027             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAATCTACAGTTTC AGAAGGGNATTTGCTCGTCTTTTTTTCAGAGATTTAGCATATATTGTAGGGAAGAAACTGAAAGATGTAGTATAACGTTTTGTGACTGTGCTATGAATCTGAAGAAGATAGGGTACAGTTTAGGTAGGCCAAGTGCAATTACTTCCAATCTTCATTGGCTTCAGTTAGTTACATGCATGGCTGTATCTAGCATTCTCTGACCATAAATCAGTAGTGCAAGAAAGTGCAATCAGGAAAGATGCATATGTTTTTCATTCAaaaaaaaa                         ]


>consensus_12358#0 GCCGTCGAATAGCGTCGGCGACAACGACGTGGACGCGGCCGTGCAGCGGGGGGACGACGA CGGTGACAACTGGCTCCGCGACATCCACATGCTGTTCGACGAGGACGACGACGACGCCGC CGCCGCCGACGCCAACGAGCGTGTCGGTGGCGTGGACATCACCATCAAGGGGAGGAGGAC GGACGACGGCGGCGTCTACCTCGGCCTGCGCATCGCCGACAAGAACGGCACAGGGCGTGG CCGGATAATCTGCTTCCGGTTCGACACCGAGGCCGACACGGCGATGACCGTGGCGGCGGA GATGGTCGCCGAGCTGGACATCACCGACCACGAGGTGACTCGCATCGCCCAGCTGATCGA CGGCAAGGTCGCCGCGCTGGTGCCGGGCTGGAGGCCGGGTCCAGCGACGGACGACGACGA CGACGACGATCTCGTCGGCGGCGGCGATGATCCGGACGCGCCGGGCGGCGCCGCCGCCGC CTGCTGCAAGAACTGCCGGCCGGCGGCGTCGTCGTCGTCGTCCTGCGGCTCGCTCGTCGA CTTCATGTCATCGGCGGCGGCGGCGGAGCGCCATGGCTGCAGGCGGTGCGCCGAGCTGCA CGGCCGGTTTGAGGAGATCACGTTCCAAGCCGACGACGACGAAGAGGAGCAGCATTTGCA GGGGAGCTCCTCTGACACCGGAGGCAGCAACCATGAGCAGCACGCCATGGGCAAGGACAA GGAGGTCATGAACATCAATGGCATTGCACAAGATGGCACAGTACAAGGTTCAGAACAGCC ATGATCAGTAATTCAGTATGATGATGATGAACATCCGAAGATCGAGCAATTCGACGCTGA TAGGCGATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGCAATGG CGCGAGTCGGTGCCGCCACCATGATCATGACCATGGTAGCTCAAAGGATTCATGATCATT GTGAGGGGGAATTGCTCATTGTGAGGGGGAATTGCTGACAGCAATCTCGATCAGCCGCTG CTCACTTTCAGAGGTTACCTTGCCGACACATTGCAAGAGCAACAAAGTCTGTACTGTTGA ACAATGCTACTGACGTTCGACATGCCCTTCTGACAAAGTAAATCTACAGTTTCAAGATTG GATTTGCTCGTCTTTTTTTCAGAGATTTAGCATATATTGTAGGGAAGAAACTGAAAGATG TAGTATAACGTTTTGTGACTGTGCTATGAATCTGAAGAAGATAGGGTACAGTTTAGGTAG GCCAAGTGCAATTACTTCCAATCTTCATTGGCTTCAGTTAGTTACATGCATGGCTGTATC TAGCATTCTCTGACCATAAATCAGTAGTGCAAGAAAGTGCAATCAGGAAAGATGCATATG TTTTTCATTCATATTTGGTACGTCTCTTATTCAAAGAAGAAATA



consensusID : consensus_12358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1103
fasta sequence
                              [CCGTCGAATAGCGTCGGCGACAACGACGTGGACGCGGCCGTGCAGCGGGGGGACGACGACGGTGACAACTGGCTCCGCGACATCCACATGCTGTTCGACGAGGACGACGACGACGCCGCCGCCGCCGACGCCAACGAGCGTGTCGGTGGCGTGGACATCACCATCAAGGGGAGGAGGGCGGACGACGGCGGCGTCTACCTCGGCCTGCGCATCGCCGACAAGAACGGCACAGGTACGTGATCGTTGCATTTTTGAACTGGCGGGTGTTCAAATTTGATTTGATTTATAATACAAAATGATGTCAAATGTGGGGGCGAATTTCGTCTGAATTCGAGCTGAATTGTGGCAGGGCGTGGCCGGATAATCTGCTTCCGGTTCGACACCGAGGCCGACACGGCGATGACCGTGGCGGCGGAGATGGTCGCCGAGCTGGACATCACCGACCACGAGGTGACTCGCATCGCCCAGCTGATCGACGGCAAGGTCGCCGCGCTGGTGCCGGGCTGGAGGCCGGGTCCAGCGACGGACGACGACGACGACGACGATCTCGTCGGCGGCGGCGATGATCCGGACGCGCCGGGCGGCGCCG-CCGCCGCCTGC-TGCAAGAAC-TGCCGGCCGGCGGCGTCGTCGTCGTCGTCCTGCGGCTCGCTCGTCGACTTCA-TGTCATCGGCGGCGGCGGCGGAGCG-CCATGGCTGCAGGCGGTGCGCCGAGCTGCACGGCCGGTTTGAGGAGATCACGTTCCAAGCCGACGACGACGAAGAGGAGCAGCATTTGCAGGGGAGCTCCTCTGACACCGGAGGCAGCAACCATGAGCAGCACGCCATGGGCAAGGACAAGGAGGTCATGAACATCAATGGCATTGCACAAGATGGCACAGTACAAGGTTCAGAACAGCCATGATCAGTAATTCAGTATGATGATGATAAACATCCGAAGATCGAGCAATTCGACGCTGATAGGCGATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGCAATGGCGCGAGTCGGTGCCGCCACCATGATCATGACCATGGTAGCTCAAAGGATTCATGATCATTGTGAGGGGGAATTGCTCATTGTGAGGG]

[-] EMBL AK119508             [CCGTCGAATAGCGTCGGCGACAACGACGTGGACGCGGCCGTGCAGCGGGGGGACGACGACGGTGACAACTGGCTCCGCGACATCCACATGCTGTTCGACGAGGACGACGACGACGCCGCCGCCGCCGACGCCAACGAGCGTGTCGGTGGCGTGGACATCACCATCAAGGGGAGGAGGGCGGACGACGGCGGCGTCTACCTCGGCCTGCGCATCGCCGACAAGAACGGCACAGGTACGTGATCGTTGCATTTTTGAACTGGCGGGTGTTCAAATTTGATTTGATTTATAATACAAAATGATGTCAAATGTGGGGGCGAATTTCGTCTGAATTCGAGCTGAATTGTGGCAGGGCGTGGCCGGATAATCTGCTTCCGGTTCGACACCGAGGCCGACACGGCGATGACCGTGGCGGCGGAGATGGTCGCCGAGCTGGACATCACCGACCACGAGGTGACTCGCATCGCCCAGCTGATCGACGGCAAGGTCGCCGCGCTGGTGCCGGGCTGGAGGCCGGGTCCAGCGACGGACGACGACGACGACGACGATCTCGTCGGCGGCGGCGATGATCCGGACGCGCCGGGCGGCGCCG CCGCCGCCTGC TGCAAGAAC TGCCGGCCGGCGGCGTCGTCGTCGTCGTCCTGCGGCTCGCTCGTCGACTTCA TGTCATCGGCGGCGGCGGCGGAGCG CCATGGCTGCAGGCGGTGCGCCGAGCTGCACGGCCGGTTTGAGGAGATCACGTTCCAAGCCGACGACGACGAAGAGGAGCAGCATTTGCAGGGGAGCTCCTCTGACACCGGAGGCAGCAACCATGAGCAGCACGCCATGGGCAAGGACAAGGAGGTCATGAACATCAATGGCATTGCACAAGATGGCACAGTACAAGGTTCAGAACAGCCATGATCAGTAATTCAGTATGATGATGATAAACATCCGAAGATCGAGCAATTCGACGCTGATAGGCGATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGCAATGGCGCGAGTCGGTGCCGCCACCATGATCATGACCATGGTAGCTCAAAGGATTCATGATCATTGTGAGGGGGAATTGCTCATTGTGAGGG]
[+] EMBL AU096355             [                                                                                                                                                                                                                                                                                                                                                                 TGGCCGGATAATCTGCTTCCGGTTCGACACCGAGGCCGACACGGCGATGACCGTGGCGGCGGAGATGGTCGCCGAGCTGGACATCACCGACCACGAGGTGACTCGCATCGCCCAGCTGATCGACGGCAAGGTCGCCGCGCTGGTGCCGGGCTGGAGGCCGGGTCCAGCGACGGANGACGACGACGACGACGATCTCGTNGGCGGCGGCGATGATCCGGACGCGCCGGGCGGCGCCG CCG CGCCTGC TGCAAGAAC TGCCGGCCGGCGGCGTCGTCGTCGTCGTCCTGCGGCTCGCTCGTCGA TTCA TGTCATCGGCGGCGGCGGCGGA CGACCATGGCTGCAGGCGGTGCGCCGAGCTGCAC GCCGGTTTGAGGAGA                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSS12988A            [                                                                                                                                                                                                                                                                                                                                                                 TGGCCGGATAATCTGCTTCCGGTTCGACACCGAGGCCGACACGGCGATGACCGTGGCGGCGGAGATGGTCGCCGAGCTGGACATCACCGACCACGAGGTGACTCGCATCGCCCAGCTGATCGACGGCAAGGTCGCCGCGCTGGTGCCGGGCTGGAGGCCGGGTCCAGCGACGGACGACGACGACGACGACGATCTCGTCGGCGGCGGCGATGATCCGGACGCGCCGGGCGGCGCCGNCCGC  CTTGCTTGCAAGAACTTGCCGGCCGGCGGCGTCGTCGTCGTCGTCCTGCGGCTCGNTCGTCGACTTCATTGTCATCGGCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_12358#1 CCGTCGAATAGCGTCGGCGACAACGACGTGGACGCGGCCGTGCAGCGGGGGGACGACGAC GGTGACAACTGGCTCCGCGACATCCACATGCTGTTCGACGAGGACGACGACGACGCCGCC GCCGCCGACGCCAACGAGCGTGTCGGTGGCGTGGACATCACCATCAAGGGGAGGAGGGCG GACGACGGCGGCGTCTACCTCGGCCTGCGCATCGCCGACAAGAACGGCACAGGTACGTGA TCGTTGCATTTTTGAACTGGCGGGTGTTCAAATTTGATTTGATTTATAATACAAAATGAT GTCAAATGTGGGGGCGAATTTCGTCTGAATTCGAGCTGAATTGTGGCAGGGCGTGGCCGG ATAATCTGCTTCCGGTTCGACACCGAGGCCGACACGGCGATGACCGTGGCGGCGGAGATG GTCGCCGAGCTGGACATCACCGACCACGAGGTGACTCGCATCGCCCAGCTGATCGACGGC AAGGTCGCCGCGCTGGTGCCGGGCTGGAGGCCGGGTCCAGCGACGGACGACGACGACGAC GACGATCTCGTCGGCGGCGGCGATGATCCGGACGCGCCGGGCGGCGCCGCCGCCGCCTGC TGCAAGAACTGCCGGCCGGCGGCGTCGTCGTCGTCGTCCTGCGGCTCGCTCGTCGACTTC ATGTCATCGGCGGCGGCGGCGGAGCGCCATGGCTGCAGGCGGTGCGCCGAGCTGCACGGC CGGTTTGAGGAGATCACGTTCCAAGCCGACGACGACGAAGAGGAGCAGCATTTGCAGGGG AGCTCCTCTGACACCGGAGGCAGCAACCATGAGCAGCACGCCATGGGCAAGGACAAGGAG GTCATGAACATCAATGGCATTGCACAAGATGGCACAGTACAAGGTTCAGAACAGCCATGA TCAGTAATTCAGTATGATGATGATAAACATCCGAAGATCGAGCAATTCGACGCTGATAGG CGATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGCAATGGCGCG AGTCGGTGCCGCCACCATGATCATGACCATGGTAGCTCAAAGGATTCATGATCATTGTGA GGGGGAATTGCTCATTGTGAGGG



consensusID : consensus_12358#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence
                              [CAGGGGAGCTTTTCTGGTCCCCGGGGGCAGCAACCCTGAGCAGCACGCCATGGGCAAGGCCAAGGAGGTCATGACCATCAATGGCCTTGCACAAGATGGCACAGTTCAAGGTTTAGAACAGCCATGATCAGTAATTCAGTCCGATGATGATGAACATCCAAAGATCGAGCATTTTGGCGCTGATGTTTACAACCACTGATGGGTTTTTGGATTTGAGCAATGGCGCGGGTTGGTGCCGCCCCCATGTTCATGACCTTGGTAGCTCAAAGGATTCATGATCTTTGTGAGGGGGAATTGCTCATTGTGAGGGGGGAATTGTTGACAGCAATTTCGATCAGCCGCTGCTCCCTTTTAGAGGTTACCTTGCCGACCCATTGCAAGAGCAACAAAGTCTGTACTGTTGAACAATGCTACTGACGTTTGACATGCCCTTTTGACAAAGTAAATTTCCAGTTTCAAGATTGGATTTGCTCGTCTTTTTTTTAGAGATTTAGCATTTTTTGTAGGGAAGAAACTGAAAAAGATGTGGTATAACGTTTTGTGGCTGTGCTATGAATTTGAAGAAGATAGGGTCCCGTTTAGGTAGGCCAAGTGCAATTTCTTCCAATTTTCATTGGCTTCCGGTTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAA]

[-] EMBL CA761683             [CAGGGGAGCTTTTCTGGTCCCCGGGGGCAGCAACCCTGAGCAGCACGCCATGGGCAAGGCCAAGGAGGTCATGACCATCAATGGCCTTGCACAAGATGGCACAGTTCAAGGTTTAGAACAGCCATGATCAGTAATTCAGTCCGATGATGATGAACATCCAAAGATCGAGCATTTTGGCGCTGATGTTTACAACCACTGATGGGTTTTTGGATTTGAGCAATGGCGCGGGTTGGTGCCGCCCCCATGTTCATGACCTTGGTAGCTCAAAGGATTCATGATCTTTGTGAGGGGGAATTGCTCATTGTGAGGGGGGAATTGTTGACAGCAATTTCGATCAGCCGCTGCTCCCTTTTAGAGGTTACCTTGCCGACCCATTGCAAGAGCAACAAAGTCTGTACTGTTGAACAATGCTACTGACGTTTGACATGCCCTTTTGACAAAGTAAATTTCCAGTTTCAAGATTGGATTTGCTCGTCTTTTTTTTAGAGATTTAGCATTTTTTGTAGGGAAGAAACTGAAAAAGATGTGGTATAACGTTTTGTGGCTGTGCTATGAATTTGAAGAAGATAGGGTCCCGTTTAGGTAGGCCAAGTGCAATTTCTTCCAATTTTCATTGGCTTCCGGTTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAA]


>consensus_12358#2 CAGGGGAGCTTTTCTGGTCCCCGGGGGCAGCAACCCTGAGCAGCACGCCATGGGCAAGGC CAAGGAGGTCATGACCATCAATGGCCTTGCACAAGATGGCACAGTTCAAGGTTTAGAACA GCCATGATCAGTAATTCAGTCCGATGATGATGAACATCCAAAGATCGAGCATTTTGGCGC TGATGTTTACAACCACTGATGGGTTTTTGGATTTGAGCAATGGCGCGGGTTGGTGCCGCC CCCATGTTCATGACCTTGGTAGCTCAAAGGATTCATGATCTTTGTGAGGGGGAATTGCTC ATTGTGAGGGGGGAATTGTTGACAGCAATTTCGATCAGCCGCTGCTCCCTTTTAGAGGTT ACCTTGCCGACCCATTGCAAGAGCAACAAAGTCTGTACTGTTGAACAATGCTACTGACGT TTGACATGCCCTTTTGACAAAGTAAATTTCCAGTTTCAAGATTGGATTTGCTCGTCTTTT TTTTAGAGATTTAGCATTTTTTGTAGGGAAGAAACTGAAAAAGATGTGGTATAACGTTTT GTGGCTGTGCTATGAATTTGAAGAAGATAGGGTCCCGTTTAGGTAGGCCAAGTGCAATTT CTTCCAATTTTCATTGGCTTCCGGTTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAACCAAAAAAAAAAAAAA



consensusID : consensus_12358#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [CAAGGTTTACTGATGGATGATGAACATCCCGAAGATCGAGCAATTCGACGCTGATAGGCGATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGCAATGGCGCGAGTCGGTGCCGCCACCATGATCATGACCATGGTAGCTCAAAGGATTCATGATCATTGTGAGGGGGAATTGCTCATTGTGAGGGGGAATTGCTGACAGCAATCTCGATCAGCCGCTGCTCACTTTCAGAGGTTACCTTGCCGACACATTGCAAGAGCAACAAAGTCTGTACTGTTGAACAATGCTACTGACGTTCGACATGCCCTTCTGACAAAGTAAATCTACAGTTTCAAGATTGGATTTGCTCGTCTTTTTTTCAGAGATTTAGCATATATTGTAGGGAAGAAACTGAAAGATGTAGTATAACGTTTTGTGACTGTGCTATGAATCTGAAGAAGATAGGGTACAGTTTAGGTAGGCCAAGTGCAATTACTTCCAATCTTCATTGGCTTCAGTTAGTTACATGCATGGCTGTATCTAGCATTCTCTGACCATAAATCAGTAGTGCAAGAAAGTGCAATCAGGAAAAA]

[+] EMBL AU096356             [CAAGGTTTACTGATGGATGATGAACATCCCGAAGATCGAGCAATTCGACGCTGATAGGCGATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGCAATGGCGCGAGTCGGTGCCGCCACCATGATCATGACCATGGTAGCTCAAAGGATTCATGATCATTGTGAGGGGGAATTGCTCATTGTGAGGGGGAATTGCTGACAGCAATCTCGATCAGCCGCTGCTCACTTTCAGAGGTTACCTTGCCGACACATTGCAAGAGCAACAAAGTCTGTACTGTTGAACAATGCTACTGACGTTCGACATGCCCTTCTGACAAAGTAAATCTACAGTTTCAAGATTGGATTTGCTCGTCTTTTTTTCAGAGATTTAGCATATATTGTAGGGAAGAAACTGAAAGATGTAGTATAACGTTTTGTGACTGTGCTATGAATCTGAAGAAGATAGGGTACAGTTTAGGTAGGCCAAGTGCAATTACTTCCAATCTTCATTGGCTTCAGTTAGTTACATGCATGGCTGTATCTAGCATTCTCTGACCATAAATCAGTAGTGCAAGAAAGTGCAATCAGGAAAAA]


>consensus_12358#3 CAAGGTTTACTGATGGATGATGAACATCCCGAAGATCGAGCAATTCGACGCTGATAGGCG ATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGCAATGGCGCGAG TCGGTGCCGCCACCATGATCATGACCATGGTAGCTCAAAGGATTCATGATCATTGTGAGG GGGAATTGCTCATTGTGAGGGGGAATTGCTGACAGCAATCTCGATCAGCCGCTGCTCACT TTCAGAGGTTACCTTGCCGACACATTGCAAGAGCAACAAAGTCTGTACTGTTGAACAATG CTACTGACGTTCGACATGCCCTTCTGACAAAGTAAATCTACAGTTTCAAGATTGGATTTG CTCGTCTTTTTTTCAGAGATTTAGCATATATTGTAGGGAAGAAACTGAAAGATGTAGTAT AACGTTTTGTGACTGTGCTATGAATCTGAAGAAGATAGGGTACAGTTTAGGTAGGCCAAG TGCAATTACTTCCAATCTTCATTGGCTTCAGTTAGTTACATGCATGGCTGTATCTAGCAT TCTCTGACCATAAATCAGTAGTGCAAGAAAGTGCAATCAGGAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12358#2      ------------------------------------------------------------
consensus_12358#3      ------------------------------------------------------------
consensus_12358#0      GCCGTCGAATAGCGTCGGCGACAACGACGTGGACGCGGCCGTGCAGCGGGGGGACGACGA 60
consensus_12358#1      ------------------------------------------------------------
                                                                                   

consensus_12358#2      ------------------------------------------------------------
consensus_12358#3      ------------------------------------------------------------
consensus_12358#0      CGGTGACAACTGGCTCCGCGACATCCACATGCTGTTCGACGAGGACGACGACGACGCCGC 120
consensus_12358#1      ------------------------------------------------------------
                                                                                   

consensus_12358#2      ------------------------------------------------------------
consensus_12358#3      ------------------------------------------------------------
consensus_12358#0      CGCCGCCGACGCCAACGAGCGTGTCGGTGGCGTGGACATCACCATCAAGGGGAGGAGGAC 180
consensus_12358#1      ------------------------------------------------------------
                                                                                   

consensus_12358#2      ------------------------------------------------------------
consensus_12358#3      ------------------------------------------------------------
consensus_12358#0      GGACGACGGCGGCGTCTACCTCGGCCTGCGCATCGCCGACAAGAACGGCACAGGGCGTGG 240
consensus_12358#1      ------------------------------------------------------------
                                                                                   

consensus_12358#2      ------------------------------------------------------------
consensus_12358#3      ------------------------------------------------------------
consensus_12358#0      CCGGATAATCTGCTTCCGGTTCGACACCGAGGCCGACACGGCGATGACCGTGGCGGCGGA 300
consensus_12358#1      ------------------------------------------------------------
                                                                                   

consensus_12358#2      ------------------------------------------------------------
consensus_12358#3      ------------------------------------------------------------
consensus_12358#0      GATGGTCGCCGAGCTGGACATCACCGACCACGAGGTGACTCGCATCGCCCAGCTGATCGA 360
consensus_12358#1      -------------------------------------CCGTCGAATAGCGTCGGCGACAA 23
                                                                                   

consensus_12358#2      ------------------------------------------------------------
consensus_12358#3      ------------------------------------------------------------
consensus_12358#0      CGGCAAGGTCGCCGCGCTGGTGCCGGGCTGGAGGCCGGGTCCAGCGACGGACGACGACGA 420
consensus_12358#1      CGACGTGGACGCGGCCGTGCAGCGGGGGGACGACGACGGTGACAACTGGCTCCGCGACAT 83
                                                                                   

consensus_12358#2      ------------------------------------------------------------
consensus_12358#3      ------------------------------------------------------------
consensus_12358#0      CGACGACGATCTCGTCGGCGGCGGCGATGATCCGGACGCGCCGGGCGGCGCCGCCGCCGC 480
consensus_12358#1      CCACATGCTGTTCGACGAGGACGACGACGACGCCGCCGCCGCCGACGCCAACGAGCGTGT 143
                                                                                   

consensus_12358#2      ------------------------------------------------------------
consensus_12358#3      ------------------------------------------------------------
consensus_12358#0      CTGCTGCAAGAACTGCCGGCCGGCGGCGTCGTCGTCGTCGTCCTGCGGCTCGCTCGTCGA 540
consensus_12358#1      CGGTGGCGTGGACATCACCATCAAGGGGAGGAGGGCGGACGACGGCGGCGTCTACCTCGG 203
                                                                                   

consensus_12358#2      ------------------------------------------------------------
consensus_12358#3      ------------------------------------------------------------
consensus_12358#0      CTTCATGTCATCGGCGGCGGCGGCGGAGCGCCATGGCTGCAGGCGGTGCGCCGAGCTGCA 600
consensus_12358#1      CCTGCGCATCGCCGACAAGAACGGCACAGGTACGTGATCGTTGCATTTTTGAACTGGCGG 263
                                                                                   

consensus_12358#2      ----------------------------------------------------------CA 2
consensus_12358#3      ------------------------------------------------------------
consensus_12358#0      CGGCCGGTTTGAGGAGATCACGTTCCAAGCCGACGACGACGAAGAGGAGCAGCATTTGCA 660
consensus_12358#1      GTGTTCAAATTTGATTTGATTTATAATACAAAATGATGTCAAATGTGGGGGCGAATTTCG 323
                                                                                   

consensus_12358#2      GGGGAGCTTTTCTGGTCCCCGGGGGCAGCAACCCTGAGCAGCACGCCATGGG--CAAGGC 60
consensus_12358#3      ------------------------------------------------------------
consensus_12358#0      GGGGAGCTCCTCTGA-CACCGGAGGCAGCAACCATGAGCAGCACGCCATGGG--CAAGGA 717
consensus_12358#1      TCTGAATTCGAGCTGAATTGTGGCAGGGCGTGGCCGGATAATCTGCTTCCGGTTCGACAC 383
                                                                                   

consensus_12358#2      CAAGGAGGTCATGACCATCAATGGCCTTGCACAAGATGGCACAGTTCAAGGTTTA--GAA 118
consensus_12358#3      ----------------------------------------------CAAGGTTTACTGAT 14
consensus_12358#0      CAAGGAGGTCATGAACATCAATGGCATTGCACAAGATGGCACAGTACAAGGTTCA--GAA 775
consensus_12358#1      CGAGGCCGACACGGCGATGACCGTGGCGGCGGAGATGGTCGCCGAGCTGGACATCACCGA 443
                                                                     *  *          

consensus_12358#2      CAGCCATGATCAGTAATTCAGTCCGATGATGATGAACATCCAAAGATCGAGCATTTTGGC 178
consensus_12358#3      GGATGATGAACATCCCGAAGATCGAGCAAT--TCGACGCTGATAGGCGATACGGATCGGC 72
consensus_12358#0      CAGCCATGATCAGTAATTCAGTATGATGATGATGAACATCCGAAGATCGAGCAATTCGAC 835
consensus_12358#1      CCACGAGGTGACTCGCATCGCCCAGCTGATCGACGGCAA-GGTCGCCGCGCTGGTGCCGG 502
                            * *                    **      *       *               

consensus_12358#2      GCTG--------------------ATGTTTACAACCACTGATGGGTTTTTGGATTTGAGC 218
consensus_12358#3      G-----------------------ATGTTTACAACCATTGATGGGTTCTTGGATTTGAGC 109
consensus_12358#0      GCTGATAGGCGATACGGATCGGCGATGTTTACAACCATTGATGGGTTCTTGGATTTGAGC 895
consensus_12358#1      GCTGGAGGCCGGGTCCAGCGACGGACGACGACGACGAC-GACGATCTCGTCGGCGGCGGC 561
                       *                       * *   ** ** *  ** *   *  * *      **

consensus_12358#2      AATG--------GCGCGGGTTGGTGCCGCCCCCATGTTC-ATGACCTTGGTAGCTCAAAG 269
consensus_12358#3      AATG--------GCGCGAGTCGGTGCCGCCACCATGATC-ATGACCATGGTAGCTCAAAG 160
consensus_12358#0      AATG--------GCGCGAGTCGGTGCCGCCACCATGATC-ATGACCATGGTAGCTCAAAG 946
consensus_12358#1      GATGATCCGGACGCGCCGGGCGGCGCCGCCGCCGCCTGCTGCAAGAACTGCCGGCCGGCG 621
                        ***        ****  *  ** ****** **     *    *     *  *  *   *

consensus_12358#2      GATTCATGATCTTTGTGAGGGGGAATTGCTCATTGTGAGGGGGGAATTGTTGACAGCAAT 329
consensus_12358#3      GATTCATGATCATTGTGAGGGGGAATTGCTCATTGTGAGGGGG-AATTGCTGACAGCAAT 219
consensus_12358#0      GATTCATGATCATTGTGAGGGGGAATTGCTCATTGTGAGGGGG-AATTGCTGACAGCAAT 1005
consensus_12358#1      GCGTCGTCGTCGTCGTCCTGCGGC-TCGCTCGTCGACTTCATGTCATCGGCGGCGGCGGC 680
                       *  ** *  ** * **   * **  * **** * *       *  ** *  * * **   

consensus_12358#2      TTCGATCAGCCGCTGCTCCCTTTTAG--AGGTTACCTTGCCGACCCATTGCAAGAGCAA- 386
consensus_12358#3      CTCGATCAGCCGCTGCTCACTTTCAG--AGGTTACCTTGCCGACACATTGCAAGAGCAA- 276
consensus_12358#0      CTCGATCAGCCGCTGCTCACTTTCAG--AGGTTACCTTGCCGACACATTGCAAGAGCAA- 1062
consensus_12358#1      GGAGCGCCATGGCTGCAGGCGGTGCGCCGAGCTGCACGGCCGGTTTGAGGAGATCACGTT 740
                          *  *    *****   *  *  *    * * *   ****       *  *   *   

consensus_12358#2      CAAAGTCTGTACTGTTGAACAATGCTACTGACGTTTGACATGCCCTTTTGACA----AAG 442
consensus_12358#3      CAAAGTCTGTACTGTTGAACAATGCTACTGACGTTCGACATGCCCTTCTGACA----AAG 332
consensus_12358#0      CAAAGTCTGTACTGTTGAACAATGCTACTGACGTTCGACATGCCCTTCTGACA----AAG 1118
consensus_12358#1      CCAAGCCGACGACGACGAAGAGGAGCAGCATTTGCAGGGGAGCTCCTCTGACACCGGAGG 800
                       * *** *      *  *** *     *         *    ** * * *****    * *

consensus_12358#2      TA--AATTTCCAGTTTCAAGAT-TGGATTTGCTCGTCTTTTTTTTAGAGATT--TAGCAT 497
consensus_12358#3      TA--AATCTACAGTTTCAAGAT-TGGATTTGCTCGTCTTTTTTTCAGAGATT--TAGCAT 387
consensus_12358#0      TA--AATCTACAGTTTCAAGAT-TGGATTTGCTCGTCTTTTTTTCAGAGATT--TAGCAT 1173
consensus_12358#1      CAGCAACCATGAGCAGCACGCCATGGGCAAGGACAAGGAGGTCATGAACATCAATGGCAT 860
                        *  **     **   ** *   ***    *  *       *     * **   * ****

consensus_12358#2      T--------TTTTGTAGGGAAGAAACTGAAAAAGATGTGGT--ATAACGTTTTGTGGCTG 547
consensus_12358#3      A--------TATTGTAGGGAAGAAACTGAAA--GATGTAGT--ATAACGTTTTGTGACTG 435
consensus_12358#0      A--------TATTGTAGGGAAGAAACTGAAA--GATGTAGT--ATAACGTTTTGTGACTG 1221
consensus_12358#1      TGCACAAGATGGCACAGTACAAGGTTCAGAACAGCCATGATCAGTAATTCAGTATGATGA 920
                                *     **   *        **  *   *  *   ***     * **    

consensus_12358#2      TGCTATGAATTTGAAGAAGATAGGGTCCCGTTTAGGTAGGCCAAGTGCAAT-----TTCT 602
consensus_12358#3      TGCTATGAATCTGAAGAAGATAGGGTACAGTTTAGGTAGGCCAAGTGCAAT-----TACT 490
consensus_12358#0      TGCTATGAATCTGAAGAAGATAGGGTACAGTTTAGGTAGGCCAAGTGCAAT-----TACT 1276
consensus_12358#1      TGATAAACATCCGAAGATCGAGCAATTCGACGCTGATAGGCGATACGGATCGGCGATGTT 980
                       ** **   **  *****        * *      * ***** *   * *       *  *

consensus_12358#2      TCCAATTTTCATTGGCTTCCGGTTGGTTTAAAAAAAAAAAAAA----------------- 645
consensus_12358#3      TCCAATCTTCATTGGCTTC-AGTTAGTTACATGCATGGCTGTATCTAGCATTCTC----T 545
consensus_12358#0      TCCAATCTTCATTGGCTTC-AGTTAGTTACATGCATGGCTGTATCTAGCATTCTC----T 1331
consensus_12358#1      TACAACCATTGATGGGTTC--TTGGATTTGAGCAATGGCGCGAGTCGGTGCCGCCACCAT 1038
                       * ***   *   *** ***   *   **  *   *       *                 

consensus_12358#2      AAAAAAAA--AAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAA----------------- 686
consensus_12358#3      GACCATAA--ATCAGTAGTGCAAGAAAGTGCAATCAGGAAAAA----------------- 586
consensus_12358#0      GACCATAA--ATCAGTAGTGCAAGAAAGTGCAATCAGGAAAGATGCATATGTTTTTCATT 1389
consensus_12358#1      GATCATGACCATGGTAGCTCAAAGGATTCATGATCATTGTGAGGGGGAATTGCTCATTGT 1098
                        *  *  *  *          **  *      *  *                        

consensus_12358#2      -----------------------------------
consensus_12358#3      -----------------------------------
consensus_12358#0      CATATTTGGTACGTCTCTTATTCAAAGAAGAAATA 1424
consensus_12358#1      GAGGG------------------------------ 1103
                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)