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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1000 fasta sequence
[GCCCTCGTCGTCATTCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCTCCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCT-CCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT-CGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT-CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCG-CCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTA-TTTGCTTAGGAGATTTGCCCGCGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAAGGAAATGTTGTGAAATGGACGATGTTCCTTTG-CCCCATGGGCTATGTAAATATTTCAAGACTTTTAGAGAGATTTGGGGTGAAAATGTCTCGAATAGTGGCCGCAGCTGCTAAATATCGTGTGAAAAAATAACACAGCAAGATCAGCCTGACAAATAAGGGTTATGTGGGACGAAAGGAAA]
[+] EMBL AU057286 [GCCCTCGTCGTCATTCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCTCCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCT CCCGGA GGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT CGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGG ]
[+] EMBL AK073181 [ TCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCTCCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCT CCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT CGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGTGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGTAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCG CCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTA TTTGCTTAGGAGATTTGCCCGCGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAAGGAAATGTTGTGAAATGGACGATGTTCCTTTG CCCCATGGGCTATGTAAATATTTCAAGACTTTTAGAGAGATTTGGGGTGAAAATGTCTCGAATAGTGGCCGCAGCTGCTAAATATCGTGTGAAAAAATAACACAGCAA ]
[+] EMBL CB631607 [ TGCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGTGAATGGAAGCGTACATGTTGTTCT CCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT CGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCAGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCG CCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTA TTTGCTTAGGAGATTTGCCCGCGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAATGAAATGTTGTGAAATGGACGATGTTCCTTTG CCCCATGGGCTATGTAAATATTTCAAGA ]
[-] EMBL CB631608 [ GCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGTGAATGGAAGCGTACATGTTGTTCT CCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT CGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCAGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCG CCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTA TTTGCTTAGGAGATTTGCCCGCGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAATGAAATGTTGTGAAATGGACGATGTTCCTATG CCCCATGGGCTATGTAAATATTTCAAGACTT ]
[-] EMBL AU057076 [ CGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTNTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCTCCCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGTCCGGA CTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTC ]
[+] EMBL CA755350 [ CATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCT CCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT CGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCNAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGNCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCNAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCGCCCGAGGCCGG AGGGATGCCCGGGCAAGCTCTGTTATTTTGCTTA GAGATTTGCCCGCG ]
[+] EMBL CB647267 [ TGCGTTCCTTATTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCT CCCGGAGGGAAGGGATGATCATGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT CGGAGCTGTCGCTCTCGTCGTCATCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCCACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGAGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCCGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGC ]
[-] EMBL CB650774 [ GGTGGTCATCGTGGGCGGCGGGCCAGTTCGAGATGTCCTCGGTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTTGCTTCGTCGGCAAGTCGCAGTGGCTCGCGTAGCTGGCGCCGGTGGGCGGCCTGCAGGACATGGCGAAGCGGATGAGGAAGCGCCTCAAGACGTCGCGCAGTTGCGGCGTCGGGCTCGGGGTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCG CCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTA TTTGCTTAGGAGATTTGCCCGCGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAAGGAAATGTTGTGAAATGGACGATGTTCCTTTGAGGGCATGGGCTATGT ]
[-] EMBL CB647268 [ AGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCG CCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTA TTTGCTTAGGAGATTTGCCCGCGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAAGGAAATGTTGTGAAATGGACGATGTTCCTTTG CCCCATGGGCTATGTAAATATTTCAAGACTTTTAGAGAGATTTGGGGTGAAAATGTCTCGAATAGTGGCCGCAGCTGCTAAATATCGTGTGAAAAAATAACACAGCAAGATCAGCCTGACAAATAAGGGTTATGTGGGACGAAAGGAAA]
consensusID : consensus_12362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[GAGTAGCCCTCGTCGTCATTCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCTCCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCTCCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGTCGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGTGCGTGTGCCTGCACCCACCCTCCCCCTTTCATCTGGATCTTGCTGCTGCTGCTCGAGAGGTTTCAACTTTTGGGCTTTGGTGATCTGATCGGCGTGCGTGCTTGCTCCGTTTGTGTTGCAGGAGGGGGCTCTCCCAGTTCTTCGACGGCNAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCG]
[+] EMBL CA754013 [GAGTAGCCCTCGTCGTCATTCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCTCCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCTCCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGTCGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGTGCGTGTGCCTGCACCCACCCTCCCCCTTTCATCTGGATCTTGCTGCTGCTGCTCGAGAGGTTTCAACTTTTGGGCTTTGGTGATCTGATCGGCGTGCGTGCTTGCTCCGTTTGTGTTGCAGGAGGGGGCTCTCCCAGTTCTTCGACGGCNAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12362#0 -----GCCCTCGTCGTCATTCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCT 55
consensus_12362#1 GAGTAGCCCTCGTCGTCATTCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCT 60
*******************************************************
consensus_12362#0 CCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATC 115
consensus_12362#1 CCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATC 120
************************************************************
consensus_12362#0 GTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTC 175
consensus_12362#1 GTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTC 180
************************************************************
consensus_12362#0 TCCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCT 235
consensus_12362#1 TCCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCT 240
************************************************************
consensus_12362#0 GAGTCGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGC 295
consensus_12362#1 GAGTCGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGC 300
************************************************************
consensus_12362#0 TCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAG 355
consensus_12362#1 TCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAG 360
************************************************************
consensus_12362#0 CTCCCGCTCAAGAGGGGGCTCTCCAAGTTCTTCGACGGCAAGTCGCAGTCGTTCGCGTCG 415
consensus_12362#1 CTCCCGCTCAAGTGCGTG-TGCCTGCACCCACCCTCCCCCTTTCATC-TGGATCTTGCTG 418
************ * * * * * * * * * ** * * ** * *
consensus_12362#0 CTGGCGGCGGTGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACG 475
consensus_12362#1 CTGCTGCT--CGAGAGGTTTCAACTTTTGGGCTTTGGTGATCTGA-------TC--GGCG 467
*** * * * ** * * *** * *** * ** * **
consensus_12362#0 TCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCG 535
consensus_12362#1 T-GCGTGCTTGCTCCGTTTGTGTTGCAGGAGGGGGCTCTCCCAGTTCTT-CGACGGCNAG 525
* *** *** *** * * * ** * * * * * * * * * *
consensus_12362#0 CCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAG--GGAG 593
consensus_12362#1 TCGCAGTCGTTC-GCGTCGCTGGCGGCGGTGGGCGGCCGGAGGACATGGCGAAGCCGATG 584
*** * ** ** *** * ** * *** * * ** * ** * *** * *
consensus_12362#0 GACAGCTGTCCGTGCTCGGCGCG-AGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATC 652
consensus_12362#1 AGGAAGCGCCTCAAGACGTCGCGCAGCTGCG----------------------------- 615
* * * ** **** *** *
consensus_12362#0 TCGCCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTATTTGCTTAGGAGATTTGCCCG 712
consensus_12362#1 ------------------------------------------------------------
consensus_12362#0 CGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGT 772
consensus_12362#1 ------------------------------------------------------------
consensus_12362#0 AGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAAGGAAATGTTGTGA 832
consensus_12362#1 ------------------------------------------------------------
consensus_12362#0 AATGGACGATGTTCCTTTGCCCCATGGGCTATGTAAATATTTCAAGACTTTTAGAGAGAT 892
consensus_12362#1 ------------------------------------------------------------
consensus_12362#0 TTGGGGTGAAAATGTCTCGAATAGTGGCCGCAGCTGCTAAATATCGTGTGAAAAAATAAC 952
consensus_12362#1 ------------------------------------------------------------
consensus_12362#0 ACAGCAAGATCAGCCTGACAAATAAGGGTTATGTGGGACGAAAGGAAA 1000
consensus_12362#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||