cluster # 12365

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Oryza sativa
cluster # 12365 cluster # 12365 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12365#0 length = 598 sequences # 2

consensus_12365#1 length = 518 sequences # 8

consensusID : consensus_12365#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 598
fasta sequence

                              [CGAAGATAGACAGCTTGCGATGTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGCCCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTTCGCGGCACACTCCTG-ATCCCACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCATTCTGCGCAAACCTTCTGATCTCTTAGATGGCATCGGGCGCCTTCTTCTTGAATGTACAGTTTGTGGAAGCTGCGGGAGGCCCTTTACCCCAAATTCGTCCTATAAATGAAGTGTTATTAACTCCGCCCCTTACTTGGTCCGTTCGTTTCTCCAACGATTCCTGACTTGCATAAAACACCCTGTCGCTTACTCAAAACTTAAATCTGCCTTAGTGAGCACAATTCCCCTTCTATGCCATACTGTGCTTCTATTAATCTAGA]

[-] EMBL OSYK35               [CGAAGATAGACAGCTTGCGATGTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGCCCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTTCGCGGCACACTCCTG ATCCCACTGCTCCAGATGTGCTTGTTGAGCTTCACA                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BE040279             [                                                        AAGGGTGATGTTGCAATTCAAACTAGACTTATTCTAAAGATGCAGAGAAGGTAAAGCATAATCCGTTTCGTCAACAACCTTGGTTCCCAGTCCCTTCAAACCCTTAGGAGGGACCTCTGACACAGTGACCAGAGAGTAGAGCTCTTGCTTGGCATCCTCCTGGTTATTCCTCTTGCGGGCGATCCTCACACGAACCCTACGCGGCACACTCCTGAATCCCACTGCTCCAGATGTGCTTGTTGAGCTTTACATCGACCCTGACATCTGTAGTGCCCATAGCCATTCTGCGCAAACCTTCTGATCTCTTAGATGGCATCGGGCGCCTTCTTCTTGAATGTACAGTTTGTGGAAGCTGCGGGAGGCCCTTTACCCCAAATTCGTCCTATAAATGAAGTGTTATTAACTCCGCCCCTTACTTGGTCCGTTCGTTTCTCCAACGATTCCTGACTTGCATAAAACACCCTGTCGCTTACTCAAAACTTAAATCTGCCTTAGTGAGCACAATTCCCCTTCTATGCCATACTGTGCTTCTATTAATCTAGA]




>consensus_12365#0
CGAAGATAGACAGCTTGCGATGTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGT
TTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCC
GTTTCGTCAACAACCTTGGTTCCCAGCCCCTTCAAACCCTCAGGAGGGACCTCGGCCACA
GTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATC
CTCACACGAACCCTTCGCGGCACACTCCTGATCCCACTGCTCCAGATGTGCTTGTTGAGC
TTCACATCGACCCTGACATCTGTAGTGCCCATAGCCATTCTGCGCAAACCTTCTGATCTC
TTAGATGGCATCGGGCGCCTTCTTCTTGAATGTACAGTTTGTGGAAGCTGCGGGAGGCCC
TTTACCCCAAATTCGTCCTATAAATGAAGTGTTATTAACTCCGCCCCTTACTTGGTCCGT
TCGTTTCTCCAACGATTCCTGACTTGCATAAAACACCCTGTCGCTTACTCAAAACTTAAA
TCTGCCTTAGTGAGCACAATTCCCCTTCTATGCCATACTGTGCTTCTATTAATCTAGA

consensusID : consensus_12365#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 518
fasta sequence

                              [TTTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC-CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGGGTTTGCCGCTGTTCCGGCGG]

[+] EMBL CF308788             [TTTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGGGTTTGCCGCTGTTCCGGCG ]
[-] EMBL AU100901             [TTTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCCACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGG                    ]
[+] EMBL CF310454             [TTTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTTCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTC                                     ]
[-] EMBL CF310453             [ TTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGGGTTTGCCGCTGTTCCGGCGG]
[-] EMBL CF308787             [ TTTTTGCTATAGTCCAAAACTTCTGATTT CCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCT CTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGGGTTTGCCGCTGTTCCGGCGG]
[+] EMBL BE607486             [                                          TTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGC CCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCCACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACA                                                                                                                                            ]
[-] EMBL AA751037             [                                                                                                            GTCAACAACCTTGGTTCCCAGCNNCCTTCAAA CCTCA GA GGACCTCGGCCACAGTGACCAGAG GTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCCACTGCTCCAGATGTGCAAGAAGAGCTTCACATCG                                                                                                                                                                                                                                  ]
[-] EMBL C27919               [                                                                                                                                                      GGACCTCGGCCANAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGAACCTCACACGAACCCTCCGCGGNAAACTCCTGATCCCACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTG                     ]




>consensus_12365#1
TTTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAA
ACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTT
GGTTCCCAGCCCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAG
CTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCG
CGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGAC
ATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGC
CTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGT
CACCACCTCCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTT
CCCTTCGCCCTAGGCTGGGTTTGCCGCTGTTCCGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12365#0      CGAAGATAGACAGCTTGCGATGTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGT 60
consensus_12365#1      -----------------TTTTTTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGT 43
                                           * **************************************

consensus_12365#0      TTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCC 120
consensus_12365#1      TTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCC 103
                       ************************************************************

consensus_12365#0      GTTTCGTCAACAACCTTGGTTCCCAGCCCCTTCAAACCCTCAGGAGGGACCTCGGCCACA 180
consensus_12365#1      GTTTCGTCAACAACCTTGGTTCCCAGCCCCTTCAAACCCTCAGGAGGGACCTCGGCCACA 163
                       ************************************************************

consensus_12365#0      GTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATC 240
consensus_12365#1      GTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATC 223
                       ************************************************************

consensus_12365#0      CTCACACGAACCCTTCGCGGCACACTCCTGATCCCACTGCTCCAGATGTGCTTGTTGAGC 300
consensus_12365#1      CTCACACGAACCCTCCGCGGCACACTCCTGATCCAACTGCTCCAGATGTGCTTGTTGAGC 283
                       ************** ******************* *************************

consensus_12365#0      TTCACATCGACCCTGACATCTGTAGTGCCCATAGCCATTCTGCGCAAACCTTCTGATCTC 360
consensus_12365#1      TTCACATCGACCCTGACATCTGTAGTGCCCATAGCC-TTCTGCGCAAACTTCCTGATCTC 342
                       ************************************ ************ * ********

consensus_12365#0      TTAGATGGCATCGGGCGCCTTCTTCTTGAATGTACAGTTTGTGGAAGCTGCGGGAGGCCC 420
consensus_12365#1      TTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCT-GTGGAGGC-GCTTGTGGAGG 400
                       ** ******** ************************* * ***** ** **  * **   

consensus_12365#0      TTTACCCCAAATTCGTCCTATAAATGAAGTGTTATTAACTCCGCCCCTTACTTGGTCCGT 480
consensus_12365#1      TTGATGGTGTACTCCCTC------------GTCACCACCTCC--TCCTTCCTCG--CCGC 444
                       ** *      * **   *            ** *  * ****   **** ** *  *** 

consensus_12365#0      TCGTTTCTCCAACGATTCCTGACTTGCATAAAACACCCTGTCGCTTACTCAAAACTTAAA 540
consensus_12365#1      TCCTCCCTTC-----TTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGGG 499
                       ** *  ** *     ***   **   * *      *    ** ***   *  *   *   

consensus_12365#0      TCTGCCTTAGTGAGCACAATTCCCCTTCTATGCCATACTGTGCTTCTATTAATCTAGA 598
consensus_12365#1      TTTGCCGCTGTTCCGGCGG--------------------------------------- 518
                       * ****   **     *