cluster # 1237

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Oryza sativa
cluster # 1237 cluster # 1237 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1237#0 length = 336 sequences # 1

consensus_1237#1 length = 221 sequences # 1

consensusID : consensus_1237#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANATCCGCGAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGGCTGTTCGACGCNCGGGGAAGGCCCCCGAGGGGGCCGTTTCCCGGTCCGTCCCCCGGCCGGCACGGGGCGGCCCGCTCTNGCCGCGCGACAAGCTTCGAGCAGTCCGCCGGCAACCGACGGGTTCGGGGGCCGGGACCCCGAGCCCAGCCTNAGAGCCAATCCTTTTTCCGAAGTTANGGATCC]

[+] EMBL AU163270             [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANATCCGCGAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGGCTGTTCGACGCNCGGGGAAGGCCCCCGAGGGGGCCGTTTCCCGGTCCGTCCCCCGGCCGGCACGGGGCGGCCCGCTCTNGCCGCGCGACAAGCTTCGAGCAGTCCGCCGGCAACCGACGGGTTCGGGGGCCGGGACCCCGAGCCCAGCCTNAGAGCCAATCCTTTTTCCGAAGTTANGGATCC]




>consensus_1237#0
CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG
AAATCACATTGCGTCANATCCGCGAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTC
GGATTCCCCTTGTCCGTACCAGTTCTGAGTCGGCTGTTCGACGCNCGGGGAAGGCCCCCG
AGGGGGCCGTTTCCCGGTCCGTCCCCCGGCCGGCACGGGGCGGCCCGCTCTNGCCGCGCG
ACAAGCTTCGAGCAGTCCGCCGGCAACCGACGGGTTCGGGGGCCGGGACCCCGAGCCCAG
CCTNAGAGCCAATCCTTTTTCCGAAGTTANGGATCC

consensusID : consensus_1237#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence

                              [CGACGNNTGGNTTTGGCTACCTTAANANAANCATAGTTACTCCCGCNTANNACCCGCGCTTGGTTGAATTTTTTCACTTTNACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANATCCGCNAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGGCTGTTCGACGCCCGGGGAAGGCCCCCG]

[+] EMBL AU163206             [CGACGNNTGGNTTTGGCTACCTTAANANAANCATAGTTACTCCCGCNTANNACCCGCGCTTGGTTGAATTTTTTCACTTTNACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANATCCGCNAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGGCTGTTCGACGCCCGGGGAAGGCCCCCG]




>consensus_1237#1
CGACGNNTGGNTTTGGCTACCTTAANANAANCATAGTTACTCCCGCNTANNACCCGCGCT
TGGTTGAATTTTTTCACTTTNACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANAT
CCGCNAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTAC
CAGTTCTGAGTCGGCTGTTCGACGCCCGGGGAAGGCCCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1237#0      -----------------------------------------CCCGCCGTTTACCCGCGCT 19
consensus_1237#1      CGACGNNTGGNTTTGGCTACCTTAANANAANCATAGTTACTCCCGCNTANNACCCGCGCT 60
                                                               *****     *********

consensus_1237#0      TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANAT 79
consensus_1237#1      TGGTTGAATTTTTTCACTTTNACATTCAGAGCACTGGGCAGAAATCACATTGCGTCANAT 120
                      *********** ******** ***************************************

consensus_1237#0      CCGCGAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTAC 139
consensus_1237#1      CCGCNAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTAC 180
                      **** *******************************************************

consensus_1237#0      CAGTTCTGAGTCGGCTGTTCGACGCNCGGGGAAGGCCCCCGAGGGGGCCGTTTCCCGGTC 199
consensus_1237#1      CAGTTCTGAGTCGGCTGTTCGACGCCCGGGGAAGGCCCCCG------------------- 221
                      ************************* ***************                   

consensus_1237#0      CGTCCCCCGGCCGGCACGGGGCGGCCCGCTCTNGCCGCGCGACAAGCTTCGAGCAGTCCG 259
consensus_1237#1      ------------------------------------------------------------
                                                                                  

consensus_1237#0      CCGGCAACCGACGGGTTCGGGGGCCGGGACCCCGAGCCCAGCCTNAGAGCCAATCCTTTT 319
consensus_1237#1      ------------------------------------------------------------
                                                                                  

consensus_1237#0      TCCGAAGTTANGGATCC 336
consensus_1237#1      -----------------