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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1252 fasta sequence
[AGCTCCGCAGCGAAGAGGAGTGTGGGGTTGAGGAAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTAGAGGTCATAGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAAGCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGATAAGGCTTTCACTGAAGACAGTTGGTCAGATGAGGAATTATGCAGAAAGAATCAGGATTGGTATTACCTTTCGAAAA-CGGTGG-CAGAGCGTGAGGC-TTTTGCTTATG-CAGCAAAAACTGGGCTGGACATTGTAACTATTTGCCCATCATTGGTGATTGGACCCTTAATGCAATCTACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCA-ATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACA-TTTTAAAGACCTTATATCCA-ACTTATACTTATCCCAAAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTTTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGATTGAGGATCCAAACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCAATAAAGAATCGTTATTAAAACCA-ACAGTGCATTTCCGTAAAAACAAAACAAAACAAAAACAAAAACCACAAGTGTATCGGTGTAAAAAAATTCCTGAATCTTGTGCATTGACAATGCAGATATATATAGTTGACAGTTGTTGGCTCAAAAAAAAAA]
[+] EMBL CA758807 [AGCTCCGCAGCGAAGAGGAGTGTGGGGTTGAGGAAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTAGAGGTCATAGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAAGCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGATAAGGCTTTCACTGAAGACAGTTGGTCAGATGAGGAATTATGCAGAAAGAATCAGGATTGGTATTACCTTTCGAAAA CGGTGG CAGAGCGTGAGGC TTTTGCTTATG CAGCANANACTGGGCT ]
[+] EMBL CF328354 [ CAGCGAAGAGGAGTGTGGGGTTGAGGAAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTAGAGGTCATAGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAAGCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGATAAGGCTTTCACTGAAGACAGT ]
[+] EMBL CB647560 [ AGCGAAGACGAGTGTGGGGTTGAGGAAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTAGAGGTCATAGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAAGCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGATAAGGCTTTCACTGAAGACAGTTGGTCAGATGAGGAATTATGCAGAAAGAATCAGGATTGGTATTACCTTTCGAAAA CGGTGG CAGAGCGTGAGGC TTTTGCTTATG CAGCAAAAACTGGGCTGGACATTGTAACTATTT ]
[+] EMBL AK102436 [ AAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTAGAGGTCATAGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAAGCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGATAAGGCTTTCACTGAAGACAGTTGGTCAGATGAGGAATTATGCAGAAAGAATCAGGATTGGTATTACCTTTCGAAAA CGGTGG CAGAGCGTGAGGC TTTTGCTTATG CAGCAAAAACTGGGCTGGACATTGTAACTATTTGCCCATCATTGGTGATTGGACCCTTAATGCAATCTACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCA ATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACA TTTTAAAGACCTTATATCCA ACTTATACTTATCCCAAAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTTTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGATTGAGGATCCAAACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCAATAAAGAATCGT ]
[-] EMBL CB647561 [ ATAGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAAGCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGATAAGGCTTTCACTGAAGACAGTTGGTCAGATGAGGAATTATGCAGAAAGAATCAGGATTGGTATTACCTTTCGAAAA CGGTGG CAGAGCGTGAGGC TTTTGCTTATG CAGCAAAAACTGGGCTGGACATTGTAACTATTTGCCCATCATTGGTGATTGGACCCTTAATGCAATCTACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCA ATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACA TTTTAAAGACCTTATATCCA ACTTATACTTATCCCAAAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTTTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGATTGAGGATCCAAACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCAATAAAGA ]
[+] EMBL BM421891 [ AGAAAGAATCAGGATTGGTATTACCTTTCGAAAACCAGTGGCCAGAGCGTGAGGCTTTTTGCTTATGCCAGC AAAACTGGGCTGGACATTGTAACTATTTGCCCATCATTGGTGATTGGACCCTTAATGCAATCTACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCC ATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACA TTTTAAAGACCTTATATCCA ACTTATACTTATCCC AAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTATTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTAC AAGCATTTGGCATCCTTGATTGAGGATCC AACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCCATAAAGAATCGTTATTAAAAaaa a ]
[+] EMBL BI800886 [ GTA TACC TTCGAAAA C GT G CAGAGCGTGA GC TTTTGCTTATG CA C AAACT GGCTGGACA TGTAACTA TTGCCCATCATTGGTGATTGGACCCTTAATGC ATCTACAGT AACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCA ATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCC ATAAGAGTCTCTGATATGATAAACA TTTTAAAGACCTTATATCCA ACTTACACTTATCCC AAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTTTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTAC AAGCATTTGGCATCCTTGATTGAGGATCC AACTGTGAGAACTTCAGTGTCTGTT AACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCAATAAAGAATCGTTATTAAAACCA Aaaa ]
[-] EMBL CF328355 [ TATTTGCCCATCATTGGTGATTGGACCCTTAATGCAATCTACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCA ATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACA TTTTAAAGACCTTATATCCA ACTTATACTTATCCCAAAAACTTTGTGGATGCGGAAGAGAACACCATATACAGTTTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCCCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGATTGAGGATCCAAACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCAATAAAGAATCGTTATTAAAACCA CCAGTGCATTTCCGTAAAAACAAAACAAAACAAAAACAAAAACCACAAGTGTATCGGTGTAAAAAAA ]
[+] EMBL BI811667 [ TCTTGATGTT CCACATGCTCTCCTTTT GCGTATGAAAATCCAGCATCCGGACGATACATCTCAAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACACTTTTAAAGACCTTATATCCACACTTATACTTATCCC AAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTATTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGATTGAGGATCC AACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTC ATAAAGAATCGTTATTAAAACCACCCAGTGCATTTCCGTAAAAAC AAC AC AC AAAACCACAAGTGTATCGGTGTATCCTGATTCCTGAATCTTGTGCATTGACAATGCAGATATATATAGTTGACAGTTGTTGGCTCAAAAAAAAAA]
consensusID : consensus_12373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[AGGAAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTTAACATTTGACAAGAACATATATTTGTTGTCAGTTGGGTTGATGTCGAACAATGGAAAATAGGGTGATTTTTTTGTGTTGAATCAAGGGGCCATCGCTGGTTATGGTTTTAACATGGTGAAATTGGTGATATTAGTATAAAGCAGTTGATGTTAGATCAGAAGTGAAGTCACATATTTCAGGATATCTGTGTTCCCCATAANATTAATGATTACAGACNATTCATTCTGATTTATGCTTTGCACCATCGTTGACTCCTGGCTCTATGATCTTGTATTC]
[+] EMBL CA754187 [AGGAAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTTAACATTTGACAAGAACATATATTTGTTGTCAGTTGGGTTGATGTCGAACAATGGAAAATAGGGTGATTTTTTTGTGTTGAATCAAGGGGCCATCGCTGGTTATGGTTTTAACATGGTGAAATTGGTGATATTAGTATAAAGCAGTTGATGTTAGATCAGAAGTGAAGTCACATATTTCAGGATATCTGTGTTCCCCATAANATTAATGATTACAGACNATTCATTCTGATTTATGCTTTGCACCATCGTTGACTCCTGGCTCTATGATCTTGTATTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12373#0 AGCTCCGCAGCGAAGAGGAGTGTGGGGTTGAGGAAGTCGGAAGTCCGAAGGCATGGCAGC 60
consensus_12373#1 ------------------------------AGGAAGTCGGAAGTCCGAAGGCATGGCAGC 30
******************************
consensus_12373#0 GGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCA 120
consensus_12373#1 GGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCA 90
************************************************************
consensus_12373#0 CGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGG 180
consensus_12373#1 CGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGG 150
************************************************************
consensus_12373#0 TGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCT 240
consensus_12373#1 TGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCT 210
************************************************************
consensus_12373#0 CAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGT 300
consensus_12373#1 CAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGT 270
************************************************************
consensus_12373#0 CTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTAGAGGTCAT 360
consensus_12373#1 CTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTTAACATTTG 330
*************************************************** * *
consensus_12373#0 AGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAA 420
consensus_12373#1 ACAAGAACATATATTTGTTGT--CAGTTGGGTTGATGTCGAACAATGGAAAATAGGGTGA 388
* * ** * ** ***** * * * *** * * * * *
consensus_12373#0 GCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGA 480
consensus_12373#1 TT---TTTTTGTGTTGAATCAAGGGGCCATCGCTGGTTATGGTTTTAACATGGTGAAATT 445
** * ** ** * ** ** * * **** * **
consensus_12373#0 TAAGGCTTTCACTGAAGACAGTTG--GTCAGATGAGGAATTATGCAGAAAGAATCAGGAT 538
consensus_12373#1 GGTGATATTAGTATAAAGCAGTTGATGTTAGATCAGAAGTGAAGTCACATATTTCAGGAT 505
* ** ** ****** ** **** ** * * * * * *******
consensus_12373#0 --TGGTATTACCTTTCGAA--AACGGTGGCAGAGCGTGAGGCTTTTGCTTATGCAGCAAA 594
consensus_12373#1 ATCTGTGTTCCCCATAANATTAATGATTACAGACNATTCA-TTCTGATTTATGCTTTGCA 564
** ** ** * * ** * * **** * * * ****** *
consensus_12373#0 AACTGGGCTGGACATTGTAACTATTTGCCCATCATTGGTGATTGGACCCTTAATGCAATC 654
consensus_12373#1 C-CATCGTTGACTCCTGGCTCTATGATCTTGTATTC------------------------ 599
* * ** ** **** * * *
consensus_12373#0 TACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGT 714
consensus_12373#1 ------------------------------------------------------------
consensus_12373#0 CGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCAATGCTCTCCTTTTGGC 774
consensus_12373#1 ------------------------------------------------------------
consensus_12373#0 GTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGA 834
consensus_12373#1 ------------------------------------------------------------
consensus_12373#0 TATGATAAACATTTTAAAGACCTTATATCCAACTTATACTTATCCCAAAAACTTTGTGGA 894
consensus_12373#1 ------------------------------------------------------------
consensus_12373#0 TGTGGAAGAGAACACCATATACAGTTTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAG 954
consensus_12373#1 ------------------------------------------------------------
consensus_12373#0 GCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGA 1014
consensus_12373#1 ------------------------------------------------------------
consensus_12373#0 TTGAGGATCCAAACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATC 1074
consensus_12373#1 ------------------------------------------------------------
consensus_12373#0 TGTGTTGAGATCAACCGGGTCAATAAAGAATCGTTATTAAAACCAACAGTGCATTTCCGT 1134
consensus_12373#1 ------------------------------------------------------------
consensus_12373#0 AAAAACAAAACAAAACAAAAACAAAAACCACAAGTGTATCGGTGTAAAAAAATTCCTGAA 1194
consensus_12373#1 ------------------------------------------------------------
consensus_12373#0 TCTTGTGCATTGACAATGCAGATATATATAGTTGACAGTTGTTGGCTCAAAAAAAAAA 1252
consensus_12373#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||