cluster # 12381

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Oryza sativa
cluster # 12381 cluster # 12381 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12381#0 length = 1644 sequences # 7
consensus_12381#1 length = 778 sequences # 1

consensus_12381#2 length = 717 sequences # 1
consensus_12381#3 length = 582 sequences # 1

consensusID : consensus_12381#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1644
fasta sequence

                              [AACACACATCATTTT-GTTTACCAAACACACTGAAACACGGAGCAATGGCGGCTTTGCTCCTTTGGCTGTCATGGCTTCTACTCTCCCTCCTCTCCATCTACCTCCTCGACCTCCTCGCACACTCACGACGCTGCCTCCCGCCGGGACCCCGTCCGCTGCCGCTGATCGGCAGCCTCCACCTGCTCGGCGACCTGCCACACCGCTCGCTCGCCGGCCTCGCCAAGACTTACGGCCCTCTCATGTCGCTCCGCCTTGGCGCTGTCACCACGGTGGTCGCCTCCTCGCCGGAGGT-CGCCCGCGAGTTCCTGCAGAAGCACGACGCCGTCTTCGCCACCCGTTCAACCCCCGACGCCACCGGTGACCACGCCAGGAACTCCGTCGCCTGGCTGCCCCCCGGGCCGCGGTGGCGC-GAGCTCCGCAAGATCATGGCGACGGAGCTGTTCTCCACGCGCCGGCTCGACGCGCTCCACGAGCTCCGGCAAGAGAAGGTGGCGGAGCTCGTCGACCACGTGGCGGGTCTGGCGCGCGACGGCACGGCGGTGGACATCGGCCGCGTGGCGTTCACCACGAGCCTGAACCTCGTCGCGCGCACCATCTTCTCGCACGACCTGACGAGCCTCGACGACCACGGCGCGTCGAAGGAGTTCCAGCGACTGATCACGGACGTCATGGAGGCAGTCGGCAGCCCGAACCTGTCGGACTTCTTCCCCGCGCTCGCCGCCGTCGACCTGCAGGGCTGGCGCCGGCGGCTGTCTGGGCTGTTTGCGCGGCTGCACCGGCTGTTCGACGCCGAGATGGACCATCGCAGGCTGCACGGAATGAAGGAGAAGGACGGCGACTTCCTGGAGGTGCTCCTGAGGCTCGCCGCGCGGGACGACGACACGGCGAGGCTCGACGGCGACACGCTCCGGTCACTGTTCACGGACTTGTTTACTGCAGGTAGTGACACAAGTTCTAGCACAGTAGAATGGGCAATGGCCGAATTGCTACAGAACCCAATATCAATGGCTAAACTATGCGATGAGCTAAGACGAGTTGTTGGGTCAAGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGTCATAAAAGAAACATTTCGACTGCATTCACCAGCTCCGTTATTATTACCACGGCAAGCTACGAGGACGATCCAAATAATGGGTTATACAATACCTAAAGGTACTAGAGTGTTAATAAACGTGTGGGCCATGGGTCGAGACGAAGATATATGGCCAGAAGCGGGAAAGTTTATTCCGGAGAGATTCCTAGAAAGGACAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGACGACGAATCTGCCCTGGAATGCCATTAGCTGTTAGGATGGTGCATGTACTTCTTGCATCCCTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGGTAGAAGGAAATAGAATTGATATGACGGAGAAGTTTGGTGTGACTTTAGCAAAAGCCAATCATTTATGTGCGATGGCCGCACCAACGTAAGTCAATCAGGCTCTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGGAAACATTCCATCAGGAATGTGATTATTGGTGCAAATAAATGAATAGTTTTGTAAATTTCTGGGTA]

[+] EMBL AK108519             [AACACACATCATTTT GTTTACCAAACACACTGAAACACGGAGCAATGGCGGCTTTGCTCCTTTGGCTGTCATGGCTTCTACTCTCCCTCCTCTCCATCTACCTCCTCGACCTCCTCGCACACTCACGACGCTGCCTCCCGCCGGGACCCCGTCCGCTGCCGCTGATCGGCAGCCTCCACCTGCTCGGCGACCTGCCACACCGCTCGCTCGCCGGCCTCGCCAAGACTTACGGCCCTCTCATGTCGCTCCGCCTTGGCGCTGTCACCACGGTGGTCGCCTCCTCGCCGGAGGT CGCCCGCGAGTTCCTGCAGAAGCACGACGCCGTCTTCGCCACCCGTTCAACCCCCGACGCCACCGGTGACCACGCCAGGAACTCCGTCGCCTGGCTGCCCCCCGGGCCGCGGTGGCGC GAGCTCCGCAAGATCATGGCGACGGAGCTGTTCTCCACGCGCCGGCTCGACGCGCTCCACGAGCTCCGGCAAGAGAAGGTGGCGGAGCTCGTCGACCACGTGGCGGGTCTGGCGCGCGACGGCACGGCGGTGGACATCGGCCGCGTGGCGTTCACCACGAGCCTGAACCTCGTCGTGCGCACCATCTTCTCGCACGACCTGACGAGCCTCGACGACCACGGCGCGTCGAAGGAGTTCCAGCGACTGATCACGGACGTCATGGAGGCAGTCGGCAGCCCGAACCTGTCGGACTTCTTCCCCGCGCTCGCCGCCGTCGACCTGCAGGGCTGGCGCCGGCGGCTGTCTGGGCTGTTTGCGCGGCTGCACCGGCTGTTCGACGCCGAGATGGACCATCGCAGGCTGCACGGAATGAAGGAGAAGGACGGCGACTTCCTGGAGGTGCTCCTGAGGCTCGCCGCGCGGGACGACGACACGGCGAGGCTCGACGGCGACACGCTCCGGTCACTGTTCACGGACTTGTTTACTGCAGGTAGTGACACAAGTTCTAGCACAGTAGAATGGGCAATGGCCGAATTGCTACAGAACCCAATATCAATGGCTAAACTATGCGATGAGCTAAGACGAGTTGTTGGGTCAAGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGTCATAAAAGAAACATTTCGACTGCATTCACCAGCTCCGTTATTATTACCACGGCAAGCTACGAGGACGATCCAAATAATGGGTTATACAATACCTAAAGGTACTAGAGTGTTAATAAACGTGTGGGCCATGGGTCGAGACGAAGATATATGGCCAGAAGCGGGAAAGTTTATTCCGGAGAGATTCCTAGAAAGGACAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGACGACGAATCTGCCCTGGAATGCCATTAGCTGTTAGGATGGTGCATGTACTTCTTGCATCCCTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGGTAGAAGGAAATAGAATTGATATGACGGAGAAGTTTGGTGTGACTTTAGCAAAAGCCAATCATTTATGTGCGATGGCCGCACCAACGTAAGTCAATCAGGCTCTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGGAAACATTCCATCAGGAATGTGATTATTGGTGCAAATAAATGA                       ]
[+] EMBL CB669329             [          ATTTTAGTTTACCACACACACTGAAACACGGAGCAATGGCGGCTTTGCTCCTTTGGCTGTCATGGCTTCTACTCTCCCTCCTCTCCATCTACCTCCTCGACCTCCTCGCACACTCACGACGCTGCCTCCCGCCGGGACCCCGTCCGCTGCCGCTGATCGGCAGCCTCCACCTGCTCGGCGACCTGCCACACCGCTCGCTCGCCGGCCTCGCCAAGACTTACGGCCCTCTCATGTCGCTCCGCCTTGGCGCTGTCACCACGGTGGTCGCCTCCTCGCCGGAGGT CGCCCGCGAGTTCCTGCAGAAGCACGACGCCGTCTTCGCCACCCGTTCAACCCCCGACGCCACCGGTGACCACGCCAGGAACTCCGTCGCCCGGCTGCCCCCCGGGCCGCGGTGGCGCTGAGCTCCGCAAGATCATGGCGACGGAGCTGTTCTCCACGCGCCGGCTCGACGCGCTCCACGAGCTCCGGAAAGAGAAGGTGGCGGAGCTCGTCGACCACGTGGCGGGTCTGGCGCGCGACGGCACGGCGGTGGACATCCGCCGCGTGGAGTTCACCACGAGCCTGAACCTCGTCGCGCGCACCATCTTCTCGCACGATCTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB671858             [                    ACCAAACACACTGAAACACGGAGCAATGGCGGCTTTGCTCCTTTGGCTGTCATGGCTTCTACTCTCCCTCCTCTCCATCTACCTCCTCGACCTCCTCGCACACTCACGACGCTGCCTCCCGCCGGGACCCCGTCCGCTGCCGCTGATCGGCAGCCTCCACCTGCTCGGCGACCTGCCACACCGCTCGCTCGCCGGCCTCGCCAAGACTTACGGCCCTCTCATGTCGCTCCGCCTTGGCGCTGTCACCACGGTGGTCGCCTCCTCGCCGGAGGT CGCCCGCGAGTTCCTGCAGAAGCACGACGCCGTCTTCGCCACCCGTTCAACCCCCGACGCCACCGGTGACCACGCCAGGAACTCCGTCGCCTGGCTGCCCCCCGGGCCGCGGTGGCGC GAGCTCCGCAAGATCATGGCGACGGAGCTGTTCTCCACGCGCCGGCTCGACGCGCTCCACGAGCTCCGGCAAGAGAAGGTGGCGGAGCTCGTCGACCACGTGGCGGGTCTGGCGCGCGACGGCACGGCGGTGGACATCGGCCGCGTGGCGTTCACCACGAGCCTGAACCTCGTCGCGCGCACCATCTTCTCGCACGACCTGACGAGCCTCGACGACCACGGCGCGTCGAAGGAGTTCCAGCGACTGATCACGGACGTCATGGAGGCAGTCGGCAGCCCGAACCTGTCGGACTTCTTCCCCGCGCTCGCCGCCGTCGACCTGCAAGGCTGGCGCCGGCGGCTGTCTGGGCTGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB669410             [                        cACACACTGAAACACGGAGCAATGGCGGCTTTGCTCCTTTGGCTGTCATGGCTTCTAATCTCCCTCCTCTCCATCTACCTCCTCGACCTCCTCGCACACTCACGACTCTGCCTCCCGCCGGGACCCCGTCCGCTGCCGCTGATCGGCAGCCTCCACCTGCTCGGCGACCTGCCACACCGCTCGCTCGCCGGCCTCGCCAAGACTTACGGCCCTCTCATGTCCCTCCGCCTTGGCGCTGTCACCACGGTGGTCGCCTCCTCGCCGGAGGTGCGCCCGCGAGTTCCTGCACAAGCACGACGCCGTCTTCGCCACCCGTTCAACCCCCGACGCCACCGGTGACCACGCCAGGAACTCCGTCGCCCGGCTGCCCCCCGGGCCGCGGTGGCGC GAGCTCCGCAAGATCATGGCGACAGAGCTGTTCTCCACACGCCGGCTCGACGCGCTCCACGAGCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB647542             [                                                                                                                                              CGGGACCCCCTCCGCTGCCGCTGATCGGCAGCCTCCACCTGCTCGGCGACCTGCCACACCGCTCGCTCGCCGGCCTCGCCAAGACTTACGGCCCTCTCATGTCGCTCCGCCTTGGCGCTGTCACCACGGTGGTCGCCTCCTCGCCGGAGGT CGCCCGCGAGTTCCTGCAGAAGCACGACGCCGTCTTCGCCACCCGTTCAACCCCCGACGCCACCGGTGACCACGCCAGGAACTCCGTCGCCTGGCTGCCCCCCGGGCCGCGGTGGCGC GAGCTCCGCAAGATCATGGCGACGGAGCTGTTCTCCACGCGCCGGCTCGACGCGCTCCACGAGCTCCGGCAAGAGAAGGTGGCGGAGCTCGTCCACCACGTGGCGGGTCTGGCGCGCGACGGCACGGCGGTGGACATCGGCCGCGTGGCGTTCCCCACGAGCCTGAACCTCGTCGCGCGCACCATCTTCTCGCACGACCTGACGAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB669330             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGCGAGGCTCGACGGCGACACGCTCCGGTCACTGTTCACGGACTTGTTTACTGCAGGTAGTGACACAAGTTCTAGCACAGTAGAATGGGCAATGGCCGAATTGCTACAGAACCCAATATCAATGGCTAAACTATGCGATGAGCTAAGACGAGTTGTTGGGTCAAGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGTCATAAAAGAAACATTTCGACTGCATTCACCAGCTCCGTTATTATTACCACGGCAAGCTACGAGGACGATCCAAATAATGGGTTATACAATACCTAAAGGTACTAGAGTGTTAATAAACGTGTGGGCCATGGGTCGAGACGAAGATATATGGCCAGAAGCGGGAAAGTTTATTCCGGAGAGATTCCTAGAAAGGACAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGACGACGAATCTGCCCTGGAATGCCATTAGCTGTTAGGATGGTGCATGTACTTCTTGCATCCCTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGGTAGAAGGAAATAGAATTGATATGACGGAGAAGTTTGGTGTGACTTTAGCAAAAGCCAATCATTTATGTGCGATGGCCGCACCAACGTAAGTCAATCAGGCTCTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGGAAACATTCCATCAGGAATGTGATTATTGGTGCAAATAAATGAA                      ]
[-] EMBL CB647543             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AATGGGCAATGGCCGAATTGCTACAGAACCCAATATCAATGGCTAAACTATGCGATGAGCTAAGACGAGTTGTTGGGTCAAGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGTCATAAAAGAAACATTTCGACTGCATTCACCAGCTCCGTTATTATTACCACGGCAAGCTACGAGGACGATCCAAATAATGGGTTATACAATACCTAAAGGTACTAGAGTGTTAATAAACGTGTGGGCCATGGGTCGAGACGAAGATATATGGCCAGAAGCGGGAAAGTTTATTCCGGAGAGATTCCTAGAAAGGACAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGACGACGAATCTGCCCTGGAATGCCATTAGCTGTTAGGATGGTGCATGTACTTCTTGCATCCCTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGGTAGAAGGAAATAGAATTGATATGACGGAGAAGTTTGGTGTGACTTTAGCAAAAGCCAATCATTTATGTGCGATGGCCGCACCAACGTAAGTCAATCAGGCTCTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGGAAACATTCCATCAGGAATGTGATTATTGGTGCAAATAAATGAATAGTTTTGTAAATTTCTGGGTA]




>consensus_12381#0
AACACACATCATTTTGTTTACCAAACACACTGAAACACGGAGCAATGGCGGCTTTGCTCC
TTTGGCTGTCATGGCTTCTACTCTCCCTCCTCTCCATCTACCTCCTCGACCTCCTCGCAC
ACTCACGACGCTGCCTCCCGCCGGGACCCCGTCCGCTGCCGCTGATCGGCAGCCTCCACC
TGCTCGGCGACCTGCCACACCGCTCGCTCGCCGGCCTCGCCAAGACTTACGGCCCTCTCA
TGTCGCTCCGCCTTGGCGCTGTCACCACGGTGGTCGCCTCCTCGCCGGAGGTCGCCCGCG
AGTTCCTGCAGAAGCACGACGCCGTCTTCGCCACCCGTTCAACCCCCGACGCCACCGGTG
ACCACGCCAGGAACTCCGTCGCCTGGCTGCCCCCCGGGCCGCGGTGGCGCGAGCTCCGCA
AGATCATGGCGACGGAGCTGTTCTCCACGCGCCGGCTCGACGCGCTCCACGAGCTCCGGC
AAGAGAAGGTGGCGGAGCTCGTCGACCACGTGGCGGGTCTGGCGCGCGACGGCACGGCGG
TGGACATCGGCCGCGTGGCGTTCACCACGAGCCTGAACCTCGTCGCGCGCACCATCTTCT
CGCACGACCTGACGAGCCTCGACGACCACGGCGCGTCGAAGGAGTTCCAGCGACTGATCA
CGGACGTCATGGAGGCAGTCGGCAGCCCGAACCTGTCGGACTTCTTCCCCGCGCTCGCCG
CCGTCGACCTGCAGGGCTGGCGCCGGCGGCTGTCTGGGCTGTTTGCGCGGCTGCACCGGC
TGTTCGACGCCGAGATGGACCATCGCAGGCTGCACGGAATGAAGGAGAAGGACGGCGACT
TCCTGGAGGTGCTCCTGAGGCTCGCCGCGCGGGACGACGACACGGCGAGGCTCGACGGCG
ACACGCTCCGGTCACTGTTCACGGACTTGTTTACTGCAGGTAGTGACACAAGTTCTAGCA
CAGTAGAATGGGCAATGGCCGAATTGCTACAGAACCCAATATCAATGGCTAAACTATGCG
ATGAGCTAAGACGAGTTGTTGGGTCAAGAAGAAGAATTGAAGAATCTGAAATTGGTCAAT
TGCCCTATTTGCAAGCTGTCATAAAAGAAACATTTCGACTGCATTCACCAGCTCCGTTAT
TATTACCACGGCAAGCTACGAGGACGATCCAAATAATGGGTTATACAATACCTAAAGGTA
CTAGAGTGTTAATAAACGTGTGGGCCATGGGTCGAGACGAAGATATATGGCCAGAAGCGG
GAAAGTTTATTCCGGAGAGATTCCTAGAAAGGACAATTGACTACAAAGGTGGAGATTTGG
AGCTCATCCCATTTGGTGCGGGACGACGAATCTGCCCTGGAATGCCATTAGCTGTTAGGA
TGGTGCATGTACTTCTTGCATCCCTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGG
TAGAAGGAAATAGAATTGATATGACGGAGAAGTTTGGTGTGACTTTAGCAAAAGCCAATC
ATTTATGTGCGATGGCCGCACCAACGTAAGTCAATCAGGCTCTTGTGGGTAAAAAGTAAT
AGATTGCCTTTACAAATGGAAACATTCCATCAGGAATGTGATTATTGGTGCAAATAAATG
AATAGTTTTGTAAATTTCTGGGTA

consensusID : consensus_12381#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 778
fasta sequence

                              [GCGCGGGACGACGACACGGCGAGGCTCGACGGCGACACGCTCCGGTCACTGTTCACGGACTTGTTTACTGCAGGTAGTGACACAAGTTCTAGCACAGTAGAATGGGCAATGGCCGAATTGCTACAGAACCCAATATCAATGGTTAAAATATGCGATGAGATAAGACGAGTTGTTGGGTCAAGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGTCATAAAAGAAACATTTCGTCTGCATTCTCCAGCTCCGTTATTATTACCACGTCAAGGTACGAGGAGGATCCAAATAATGGGTTATACAATACCTAAAGGTTCTAGAGTGTTAATAAACGTGTGGGCCATGGGTGGAGACGAAGATATATGTCCAGAAGCGGGAAAGTTTATTCCGGAGAGATTCCTAGAAAGGGCAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGACGACGAATCTGCCCTGGAATGCCATTAGCTGTTAGGATGGTGCATGTCCTTCTTGCATCCCTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGGCTAGAAGGAAATAGAATTGATATGACGGAGAAGTTTGTGTGTGACTTTAGCAAAAGCCAATCATTTATGTGGGATGGCCGCACCAACGTAAGTCAATCAGGCTTTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGGAAACATTCCATCAGGAATGTGATTATTGGTGCAAATAAATGAATAGTTTCGTACAAAAAAGGG]

[-] EMBL CB669411             [GCGCGGGACGACGACACGGCGAGGCTCGACGGCGACACGCTCCGGTCACTGTTCACGGACTTGTTTACTGCAGGTAGTGACACAAGTTCTAGCACAGTAGAATGGGCAATGGCCGAATTGCTACAGAACCCAATATCAATGGTTAAAATATGCGATGAGATAAGACGAGTTGTTGGGTCAAGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGTCATAAAAGAAACATTTCGTCTGCATTCTCCAGCTCCGTTATTATTACCACGTCAAGGTACGAGGAGGATCCAAATAATGGGTTATACAATACCTAAAGGTTCTAGAGTGTTAATAAACGTGTGGGCCATGGGTGGAGACGAAGATATATGTCCAGAAGCGGGAAAGTTTATTCCGGAGAGATTCCTAGAAAGGGCAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGACGACGAATCTGCCCTGGAATGCCATTAGCTGTTAGGATGGTGCATGTCCTTCTTGCATCCCTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGGCTAGAAGGAAATAGAATTGATATGACGGAGAAGTTTGTGTGTGACTTTAGCAAAAGCCAATCATTTATGTGGGATGGCCGCACCAACGTAAGTCAATCAGGCTTTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGGAAACATTCCATCAGGAATGTGATTATTGGTGCAAATAAATGAATAGTTTCGTACAAAAAAGGG]




>consensus_12381#1
GCGCGGGACGACGACACGGCGAGGCTCGACGGCGACACGCTCCGGTCACTGTTCACGGAC
TTGTTTACTGCAGGTAGTGACACAAGTTCTAGCACAGTAGAATGGGCAATGGCCGAATTG
CTACAGAACCCAATATCAATGGTTAAAATATGCGATGAGATAAGACGAGTTGTTGGGTCA
AGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGTCATAAAA
GAAACATTTCGTCTGCATTCTCCAGCTCCGTTATTATTACCACGTCAAGGTACGAGGAGG
ATCCAAATAATGGGTTATACAATACCTAAAGGTTCTAGAGTGTTAATAAACGTGTGGGCC
ATGGGTGGAGACGAAGATATATGTCCAGAAGCGGGAAAGTTTATTCCGGAGAGATTCCTA
GAAAGGGCAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGACGA
CGAATCTGCCCTGGAATGCCATTAGCTGTTAGGATGGTGCATGTCCTTCTTGCATCCCTG
TTAATTCATTTTAAATGGAGACTCCCAGCTGAGGCTAGAAGGAAATAGAATTGATATGAC
GGAGAAGTTTGTGTGTGACTTTAGCAAAAGCCAATCATTTATGTGGGATGGCCGCACCAA
CGTAAGTCAATCAGGCTTTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGGAAACA
TTCCATCAGGAATGTGATTATTGGTGCAAATAAATGAATAGTTTCGTACAAAAAAGGG

consensusID : consensus_12381#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 717
fasta sequence

                              [GACTTGTTTACTGCAGGTAGTGACACAAGTTCTAGCACAGTAGAATGGGCAATGGCCGAATTGCTACAGAACCCAATATCAATGGCTAAACTATGCGATGAGCTAAGACGAGTTGTTGGGTCAAGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGTCATAAAAGAAACATTTCGACTGCATTCACCAGCTCCGTTATTATTACCACGGCAAGCTACGAGGACGATCCAAATAATGGGTTATACAATACCTAAAGGTACTAGAGTGTTAATAAACGTGTGGGCCATGGGTCGAGACGAAGATATATGGCCAGAAGCGGGAAAGTTTATTCCGGAGAGATTCCTAGAAAGGACAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGACGACGAATCTGCCCTGGAATGCCATTAGCTGTTAGGATGGTGCATGTACTTCTTGCATCCCTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGGTAGAAGGAAATAGAATTGATATGACGGAGAAGTTTGGTGTGACTTTAGCAAAAGCCAATCATTTATGTGCGATGGCCGCACCAACGTAAGTCAATCAGGCTCTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGGAAACATTCCATCAGGAAAAGGATTATTGGTGCAAATAAATGAATAGTTTTTCCTTAAAGGA]

[-] EMBL CB685427             [GACTTGTTTACTGCAGGTAGTGACACAAGTTCTAGCACAGTAGAATGGGCAATGGCCGAATTGCTACAGAACCCAATATCAATGGCTAAACTATGCGATGAGCTAAGACGAGTTGTTGGGTCAAGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGTCATAAAAGAAACATTTCGACTGCATTCACCAGCTCCGTTATTATTACCACGGCAAGCTACGAGGACGATCCAAATAATGGGTTATACAATACCTAAAGGTACTAGAGTGTTAATAAACGTGTGGGCCATGGGTCGAGACGAAGATATATGGCCAGAAGCGGGAAAGTTTATTCCGGAGAGATTCCTAGAAAGGACAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGACGACGAATCTGCCCTGGAATGCCATTAGCTGTTAGGATGGTGCATGTACTTCTTGCATCCCTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGGTAGAAGGAAATAGAATTGATATGACGGAGAAGTTTGGTGTGACTTTAGCAAAAGCCAATCATTTATGTGCGATGGCCGCACCAACGTAAGTCAATCAGGCTCTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGGAAACATTCCATCAGGAAAAGGATTATTGGTGCAAATAAATGAATAGTTTTTCCTTAAAGGA]




>consensus_12381#2
GACTTGTTTACTGCAGGTAGTGACACAAGTTCTAGCACAGTAGAATGGGCAATGGCCGAA
TTGCTACAGAACCCAATATCAATGGCTAAACTATGCGATGAGCTAAGACGAGTTGTTGGG
TCAAGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGTCATA
AAAGAAACATTTCGACTGCATTCACCAGCTCCGTTATTATTACCACGGCAAGCTACGAGG
ACGATCCAAATAATGGGTTATACAATACCTAAAGGTACTAGAGTGTTAATAAACGTGTGG
GCCATGGGTCGAGACGAAGATATATGGCCAGAAGCGGGAAAGTTTATTCCGGAGAGATTC
CTAGAAAGGACAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGA
CGACGAATCTGCCCTGGAATGCCATTAGCTGTTAGGATGGTGCATGTACTTCTTGCATCC
CTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGGTAGAAGGAAATAGAATTGATATG
ACGGAGAAGTTTGGTGTGACTTTAGCAAAAGCCAATCATTTATGTGCGATGGCCGCACCA
ACGTAAGTCAATCAGGCTCTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGGAAAC
ATTCCATCAGGAAAAGGATTATTGGTGCAAATAAATGAATAGTTTTTCCTTAAAGGA

consensusID : consensus_12381#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [ACCCCCTTAATGAAACACGGAGCAATGGCGGCTTTGCTCCTTTGGCTGTCATGGCTTCTACTCTCCCTCCTCTCCATCTACCTCCTCGACCTCCTCGCACACTCACGACGCTGCCTCCCGCCGGGACCCCGTCCGCTGCCGCTGATCGGCAGCCTCCACCTGCTCGGCGACCTGCCACACCGCTCGCTCGCCGGCCTCGCCAAGACTTACGGCCCTCTCATGTCGCTCCGCCTTGGCGCTGTCACCACGGTGGTCGCCTCCTCGCCGGAGGTCGCCCGCGAGTTCCTGCAGAAGCACGACGCCGTCTTCGCCACCCGTTCAACCCCCGACGCCACCGGTGACCACGCCAGGAACTCCGTCGCCTGGCTGCCCCCCGGGCCGCGGTGGCGCGAGCTCCGCAAGATCATGGCGACGGAGCTGTTCTCCACGCGCCGGCTCGACGCGCTCCACGAGCTCCGGCAAGAGAAGGTGGCGGAGCTCGTCGACCACGTGGCGGGTCTGGCGCGCGACGGCACGGCGGTGGACATCGGCCGCGTGGCGTTCACCACGAGCCTGAACCTCACCGCGCGCACCATCTTCTCG]

[+] EMBL CB685426             [ACCCCCTTAATGAAACACGGAGCAATGGCGGCTTTGCTCCTTTGGCTGTCATGGCTTCTACTCTCCCTCCTCTCCATCTACCTCCTCGACCTCCTCGCACACTCACGACGCTGCCTCCCGCCGGGACCCCGTCCGCTGCCGCTGATCGGCAGCCTCCACCTGCTCGGCGACCTGCCACACCGCTCGCTCGCCGGCCTCGCCAAGACTTACGGCCCTCTCATGTCGCTCCGCCTTGGCGCTGTCACCACGGTGGTCGCCTCCTCGCCGGAGGTCGCCCGCGAGTTCCTGCAGAAGCACGACGCCGTCTTCGCCACCCGTTCAACCCCCGACGCCACCGGTGACCACGCCAGGAACTCCGTCGCCTGGCTGCCCCCCGGGCCGCGGTGGCGCGAGCTCCGCAAGATCATGGCGACGGAGCTGTTCTCCACGCGCCGGCTCGACGCGCTCCACGAGCTCCGGCAAGAGAAGGTGGCGGAGCTCGTCGACCACGTGGCGGGTCTGGCGCGCGACGGCACGGCGGTGGACATCGGCCGCGTGGCGTTCACCACGAGCCTGAACCTCACCGCGCGCACCATCTTCTCG]




>consensus_12381#3
ACCCCCTTAATGAAACACGGAGCAATGGCGGCTTTGCTCCTTTGGCTGTCATGGCTTCTA
CTCTCCCTCCTCTCCATCTACCTCCTCGACCTCCTCGCACACTCACGACGCTGCCTCCCG
CCGGGACCCCGTCCGCTGCCGCTGATCGGCAGCCTCCACCTGCTCGGCGACCTGCCACAC
CGCTCGCTCGCCGGCCTCGCCAAGACTTACGGCCCTCTCATGTCGCTCCGCCTTGGCGCT
GTCACCACGGTGGTCGCCTCCTCGCCGGAGGTCGCCCGCGAGTTCCTGCAGAAGCACGAC
GCCGTCTTCGCCACCCGTTCAACCCCCGACGCCACCGGTGACCACGCCAGGAACTCCGTC
GCCTGGCTGCCCCCCGGGCCGCGGTGGCGCGAGCTCCGCAAGATCATGGCGACGGAGCTG
TTCTCCACGCGCCGGCTCGACGCGCTCCACGAGCTCCGGCAAGAGAAGGTGGCGGAGCTC
GTCGACCACGTGGCGGGTCTGGCGCGCGACGGCACGGCGGTGGACATCGGCCGCGTGGCG
TTCACCACGAGCCTGAACCTCACCGCGCGCACCATCTTCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12381#0      ------------------------------------------------------------
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      GCGCGGGACGACGACACGGCGAGGCTCGACGGCGACACGCTCCGGTCACTGTTCACGGAC 60
consensus_12381#2      ---------------------------------------------------------GAC 3
                                                                                   

consensus_12381#0      --AACACACATCATTTTGTTTACCAAACACACTGAAACACG--GAGCAATGGCGGCTTTG 56
consensus_12381#3      ---------------------ACCCC-CTTAATGAAACACG--GAGCAATGGCGGCTTTG 36
consensus_12381#1      TTGTTTACTGCAGGTAGTGACACAAGTTCTAGCACAGTAGAATGGGCAATGGCCGAATTG 120
consensus_12381#2      TTGTTTACTGCAGGTAGTGACACAAGTTCTAGCACAGTAGAATGGGCAATGGCCGAATTG 63
                                            **       *    *  *    * ******** *  ***

consensus_12381#0      CTCC----TTTGGCTGTCATGGCTTCTACTCTCCCTCCTCTCCATCTACCTCCTCGACCT 112
consensus_12381#3      CTCC----TTTGGCTGTCATGGCTTCTACTCTCCCTCCTCTCCATCTACCTCCTCGACCT 92
consensus_12381#1      CTACAGAACCCAATATCAATGGTTAAAATATGCGATGAGATAAGACGAGTTGTTGGGTCA 180
consensus_12381#2      CTACAGAACCCAATATCAATGGCTAAACTATGCGATGAGCTAAGACGAGTTGTTGGGTCA 123
                       ** *              **** *        *  *    *    * *  *  * *  * 

consensus_12381#0      CCTCGCACACTC-ACGACGCTGCCTCCCGCCGGG-ACCCCGTCCGCT-GCCGC--TGATC 167
consensus_12381#3      CCTCGCACACTC-ACGACGCTGCCTCCCGCCGGG-ACCCCGTCCGCT-GCCGC--TGATC 147
consensus_12381#1      AGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGTCATAAAA 240
consensus_12381#2      AGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGTCATAAAA 183
                           * * * *  * **  ***      * *     ***  *  **  ** *   * *  

consensus_12381#0      GGCAGCCTCCACCTGC-TCGGCGACCTGCCACACCGCTCGCTCGCCGGCCTCGCCAAGAC 226
consensus_12381#3      GGCAGCCTCCACCTGC-TCGGCGACCTGCCACACCGCTCGCTCGCCGGCCTCGCCAAGAC 206
consensus_12381#1      GAAACATTTCGTCTGCATTCTCCAGCTCCGTTATTATTACCACGTCAAGGTA--CGAGGA 298
consensus_12381#2      GAAACATTTCGACTGCATTCACCAGCTCCGTTATTATTACCACGGCAAGCTA--CGAGGA 241
                       *  *   * *  **** *   * * ** *   *    *  * ** *    *   * **  

consensus_12381#0      TTACGGCCCTCTCATGTCGCTCCGC-CTTGGCGCTGTCACCACGGTGGTCGCCTCCTCG- 284
consensus_12381#3      TTACGGCCCTCTCATGTCGCTCCGC-CTTGGCGCTGTCACCACGGTGGTCGCCTCCTCG- 264
consensus_12381#1      GGATCCAAATAATGGGTTATACAATACCTAAAGGTTCTAGAGTGTTAATAAACGTGTGGG 358
consensus_12381#2      CGATCCAAATAATGGGTTATACAATACCTAAAGGTACTAGAGTGTTAATAAACGTGTGGG 301
                         *      *     **    *    * *   * *   *    * *  *   *   * * 

consensus_12381#0      CCGGAGGTCGCC-CGCGAGTTCCTG--CAGAAGCACGACGCCGTCTTCGCCACCCGTTCA 341
consensus_12381#3      CCGGAGGTCGCC-CGCGAGTTCCTG--CAGAAGCACGACGCCGTCTTCGCCACCCGTTCA 321
consensus_12381#1      CCATGGGTGGAGACGAAGATATATGTCCAGAAGCGGGAAAGTTTATTCCGGAGAGATTCC 418
consensus_12381#2      CCATGGGTCGAGACGAAGATATATGGCCAGAAGCGGGAAAGTTTATTCCGGAGAGATTCC 361
                       **   *** *   **    *   **  *******  **     * ***   *    *** 

consensus_12381#0      ACCCCCGACGCCACCGGTGACCACGCCAGGAACTCCG---TCGCCTGGCTGCCCCCCGGG 398
consensus_12381#3      ACCCCCGACGCCACCGGTGACCACGCCAGGAACTCCG---TCGCCTGGCTGCCCCCCGGG 378
consensus_12381#1      -TAGAAAGGGCAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGA 477
consensus_12381#2      -TAGAAAGGACAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGA 420
                                 * *  *   ** * *   *  * *  *   **  *    *     * ** 

consensus_12381#0      CCGCGGTGGCGC----GAGCTCCGCAAGATCATGGCGACGGAGC-TGTTCTCCACGCGCC 453
consensus_12381#3      CCGCGGTGGCGC----GAGCTCCGCAAGATCATGGCGACGGAGC-TGTTCTCCACGCGCC 433
consensus_12381#1      CGACGAATCTGCCCTGGAATGCCATTAGCTGTTAG-GATGGTGCATGTCCTTCTTGCATC 536
consensus_12381#2      CGACGAATCTGCCCTGGAATGCCATTAGCTGTTAG-GATGGTGCATGTACTTCTTGCATC 479
                       *  **     **    **   **   ** *  * * ** ** ** *** ** *  **  *

consensus_12381#0      GGC-TCGACGCGCTCCAC-----GAGCTCCGGCAAGAGAAGGTGGCGGAGCTCGTCGACC 507
consensus_12381#3      GGC-TCGACGCGCTCCAC-----GAGCTCCGGCAAGAGAAGGTGGCGGAGCTCGTCGACC 487
consensus_12381#1      CCTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGGCTAGAAGGAAATAGAATTGATA 596
consensus_12381#2      CCTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGG-TAGAAGGAAATAGAATTGATA 538
                           *  *  *  *  *      **   ** **    *   *  *   *     * **  

consensus_12381#0      ACGTGGCGGGTCTGGCGCGCGACGGCA-CGGCGGTGGACATCGGCCGCGTGGCGTTCACC 566
consensus_12381#3      ACGTGGCGGGTCTGGCGCGCGACGGCA-CGGCGGTGGACATCGGCCGCGTGGCGTTCACC 546
consensus_12381#1      TGACGGAGAAGTTTGTGTGTGACTTTAGCAAAAGCCAATCATTTATGTGGGATGGCCGC- 655
consensus_12381#2      TGACGGAGAAGTTTG-GTGTGACTTTAGCAAAAGCCAATCATTTATGTGCGATGGCCGC- 596
                           ** *    * * * * ***   * *    *   *        * * *  *  * * 

consensus_12381#0      ACGAGCCTGAACC--TCG-----TCGCGCGCACCATCTTCTCGCACGACCTGACGAGCCT 619
consensus_12381#3      ACGAGCCTGAACC--TCA-----CCGCGCGCACCATCTTCTCG----------------- 582
consensus_12381#1      ACCAACGTAAGTCAATCAGGCTTTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGG 715
consensus_12381#2      ACCAACGTAAGTCAATCAGGCTCTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGG 656
                       ** * * * *  *  **        * * * *  *  *  * *                 

consensus_12381#0      CGACGACCACGGCGCGTCGAAGGAGTTCCAGCGACTGATCACGGACGTCATGGAGGCAGT 679
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      AAACATTCCATCAGGAATGTGATTATTGGTGCAAATAAATGAATAGTTTCGTACAAAAAA 775
consensus_12381#2      AAACATTCCATCAGGAAAAGGATTATTGGTGCAAATAAATGAATAGTTTTTCCTTAAAGG 716
                                                                                   

consensus_12381#0      CGGCAGCCCGAACCTGTCGGACTTCTTCCCCGCGCTCGCCGCCGTCGACCTGCAGGGCTG 739
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      GGG--------------------------------------------------------- 778
consensus_12381#2      A----------------------------------------------------------- 717
                                                                                   

consensus_12381#0      GCGCCGGCGGCTGTCTGGGCTGTTTGCGCGGCTGCACCGGCTGTTCGACGCCGAGATGGA 799
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      CCATCGCAGGCTGCACGGAATGAAGGAGAAGGACGGCGACTTCCTGGAGGTGCTCCTGAG 859
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      GCTCGCCGCGCGGGACGACGACACGGCGAGGCTCGACGGCGACACGCTCCGGTCACTGTT 919
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      CACGGACTTGTTTACTGCAGGTAGTGACACAAGTTCTAGCACAGTAGAATGGGCAATGGC 979
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      CGAATTGCTACAGAACCCAATATCAATGGCTAAACTATGCGATGAGCTAAGACGAGTTGT 1039
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      TGGGTCAAGAAGAAGAATTGAAGAATCTGAAATTGGTCAATTGCCCTATTTGCAAGCTGT 1099
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      CATAAAAGAAACATTTCGACTGCATTCACCAGCTCCGTTATTATTACCACGGCAAGCTAC 1159
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      GAGGACGATCCAAATAATGGGTTATACAATACCTAAAGGTACTAGAGTGTTAATAAACGT 1219
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      GTGGGCCATGGGTCGAGACGAAGATATATGGCCAGAAGCGGGAAAGTTTATTCCGGAGAG 1279
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      ATTCCTAGAAAGGACAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGC 1339
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      GGGACGACGAATCTGCCCTGGAATGCCATTAGCTGTTAGGATGGTGCATGTACTTCTTGC 1399
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      ATCCCTGTTAATTCATTTTAAATGGAGACTCCCAGCTGAGGTAGAAGGAAATAGAATTGA 1459
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      TATGACGGAGAAGTTTGGTGTGACTTTAGCAAAAGCCAATCATTTATGTGCGATGGCCGC 1519
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      ACCAACGTAAGTCAATCAGGCTCTTGTGGGTAAAAAGTAATAGATTGCCTTTACAAATGG 1579
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      AAACATTCCATCAGGAATGTGATTATTGGTGCAAATAAATGAATAGTTTTGTAAATTTCT 1639
consensus_12381#3      ------------------------------------------------------------
consensus_12381#1      ------------------------------------------------------------
consensus_12381#2      ------------------------------------------------------------
                                                                                   

consensus_12381#0      GGGTA 1644
consensus_12381#3      -----
consensus_12381#1      -----
consensus_12381#2      -----