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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1263 fasta sequence
[TGTGAAACCGCCACCGCCAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGCGCA-CAGCAGCCGCGGCGAGTTCTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCGGAGGCGGAGCGGGGGGAGGAGGGGGAGGCGGTGTTCGCGACGGTGCAGGCGGCGGTGGACGCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACAGGGAGCCCGTCTACGTCGCCAAGGCCAAGAACCTCGTCACCCTCTCCGGCGAGGCCGGCTCGCCCGAGGCCACCGTCATCACCTGGGACAACACCGCCACCCGCATCAAGCACTCCCAGTCGTCCAGGGTTATTGGGACAGGAACGTTT-GGATGCGGAACAATTATTGTGGAGGGGGAGGATTTCATCGCAGAGAATATCACATTTGAGAACTCAGCTCCTCAGGGGTCT-GGGCAGGCAGTTGCTCTCCGAGTAAC-AGCAGA-TAGGTGTGCCTTCTACAATTGCAGGTTCCTTGGTT-GGCAAGACACATTATATTTACATTATGGAAAACAATACTTAAGGGACTGTTACATCGAAGGTAACTGTGACTTCATCTTCGGCAACTCTATTGCCCTGTTGGAACATTGCCATATTCATTGCAAATCAGCGGGTTACATTACTGCTCACAGCCGGAAATCCTCATCAGAAACTACTGGTTATGTGTTCTTGAGGTGTATTATTACTGGAAATGGAGAAGCTGGATATATGTTCCTGGGTCGGCCTTGGGGACCGTTTGGAA-GGGTTGTCTTTGCGCACACTTTTATGGATCGTTGTATTAAGCCTGCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTTGAGTACAGGTGCTCAGGGCCAGGTTTCCGCCCATCAAACCGAGT-GGCTTGGTGTAGACAATTGCTTGATGTTGAAGT-GGAGAATTTCCTTTCTCACTCTTTCATTGATCCAGACCTTGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATTGTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGGTATTTGTTGTTTTCCATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTATTTGCTCTTTAAAAA]
[+] EMBL OSC111231 [TGTGAAACCGCCACCGCCAACCCAAACCAAACAAAGCNGCGCCGCCGATCTCGCCATGGCGCA NAGCAGCCGCGGCGAGTTNTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCGGAGGCGGAGCGGGGGGAGGAGGGGGAGGCGGTGTTCGCNACGGTGCAGGCGGCGGTGGACGCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACA ]
[+] EMBL C72027 [ ttgAACCGCCACCGANAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGCGCA NAGCAGCCGCGGCGAGTTCTCCGCNTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCGGAGGCGGAGCGGGGGGAGGAGGGGGAGGCGTTGTTCGCAACGNTGCAGGCGGCGGTGGACGCGGTGCCGGTGGGGAACAGGGTGCNGACGGTGATCCGCCTCGCGCCGGGNACGTACAGGGA ]
[+] EMBL AK101494 [ CCACCGCCAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGCGCAGCAGCAGCCGCGGCGAGTTCTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCGGAGGCGGAGCGGGGGGAGGAGGGGGAGGCGGTGTTCGCGACGGTGCAGGCGGCGGTGGACGCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACAGGGAGCCCGTCTACGTCGCCAAGGCCAAGAACCTCGTCACCCTCTCCGGCGAGGCCGGCTCGCCCGAGGCCACCGTCATCACCTGGGACAACACCGCCACCCGCATCAAGCACTCCCAGTCGTCCAGGGTTATTGGGACAGGAACGTTT GGATGCGGAACAATTATTGTGGAGGGGGAGGATTTCATCGCAGAGAATATCACATTTGAGAACTCAGCTCCTCAGGGGTCT GGGCAGGCAGTTGCTCTCCGAGTAAC AGCAGA TAGGTGTGCCTTCTACAATTGCAGGTTCCTTGGTT GGCAAGACACATTATATTTACATTATGGAAAACAATACTTAAGGGACTGTTACATCGAAGGTAACTGTGACTTCATCTTCGGCAACTCTATTGCCCTGTTGGAACATTGCCATATTCATTGCAAATCAGCGGGTTACATTACTGCTCACAGCCGGAAATCCTCATCAGAAACTACTGGTTATGTGTTCTTGAGGTGTATTATTACTGGAAATGGAGAAGCTGGATATATGTTCCTGGGTCGGCCTTGGGGACCGTTTGGAA GGGTTGTCTTTGCGCACACTTTTATGGATCGTTGTATTAAGCCTGCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTTGAGTACAGGTGCTCAGGGCCAGGTTTCCGCCCATCAAACCGAGT GGCTTGGTGTAGACAATTGCTTGATGTTGAAGT GGAGAATTTCCTTTCTCACTCTTTCATTGATCCAGACCTTGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATTGTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGGTATTT ]
[+] EMBL AU056649 [ CCACCGCCAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGCGCA CAGCAGCCGCGGCGAGTTCTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCGGAGGCGGA CGGGGGGAGGAGGGGGAGGCGGTGTTCGCGACGGTGCAGGCGGCGGTGGACGCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACAGGGAGCCCGTCTACGTCGCCAAGGCCAAGAACCTCGTCACCCTCTCCGGCGAGGCCGGCTCGCCCGANGCCACCGTCATCACCTGGGACAACACCGCCACCCGCATCAAGCACTCCCAGTCGTCCAGGGTTATTGGGACAGGAACGTTTGGGATGCGGAACAATTATTGTGGAGGGGGAGGATTTCATCGCAGAGAATATCACATTTGAGAACTCAGCTCCTCAGGGGTCTNGGGCANGCAGTTGCTCTCCGAGTAACAAGCAGATTAGGTGTGCCTTCTACAATTGCAGGTTCCTTGGTTGGGCAAGACACATTATATTTACATTATGGANAACAATACTTAAGGGACTGTTACATCGAAGGTAACTGTGANTTCATCTTCGGCAACTCTATTGCCCTGT ]
[+] EMBL C72851 [ CCAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGCGCA CAGCAGCCGCGGCGAGTTCTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCGGAGGCGGA CGGGGGGAGGAGGGGGAGGCGGTGTTCGCGACGGTGCAGGCGGCGGTGGACGCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACAGGGAGCCCGTCTACGTCGCCAAGGCCAAGAACCTCGTCACCCTCTCCGGCGAGGCCGGCTCGCCCGAGGCCACCGTCATCANCTGGGACAACACCGCCACCCGCATCAAGCACTCCCAGTCGTTCAGGGTTATTGGGACAGG ACGTTT TGATGCGGAACAATTATTTTTGAAGGGGAAGATTTCATCGCAGAGAATATCAC ]
[+] EMBL CF323944 [ AACGTTT GGATGCGGAACAATTATTGTGGAGGGGGAGGATTTCATCGCAGAGAATATCACATTTGAGAACTCAGCTCCTCAGGGGTCT GGGCAGGCAGTTGCTCTCCGAGTAAC AGCAGA TAGGTGTGCCTTCTACAATTGCAGGTTCCTTGGTT GGCAAGACACATTATATTTACATTATGGAAAACAATACTTAAGGGACTGTTACATCGAAGGTAACTGTGACTTCATCTTCGGCAACTCTATTGCCCTGTTGGAACATTGCCATATTCATTGCAAATCAGCGGGTTACATTACTGCTCACAGCCGGAAATCCTCATCAGAAACTACTGGTTATGTGTTCTTGAGGTGTATTATTACTGGAAATGGAGAAGCTGGATATATGTTCCTGGGTCGGCCTTGGGGACCGTTTGGAAGGGGTTGTCTTTGCGCACACTTTTATGGATCGTTGTATTAAGCCTGCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTTGAGTACAGGTGCTCAGGGCCAGGTTTCCGCCCAT AAACCGAGTGGGCTTGGTGTAGACAATTGCTTGATTTTGAAGTGGGAGAATTTCCTTTCTCACTCTTTCATTGATCCAGACCTTGATAGGC ]
[+] EMBL AU172440 [ TGGATCGTTGTATTAAGCCTGCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTTGAGTACAGGTGCTCAGGGCCAGGTTTCCGCCCATCAAACCGAGT GGCTTGGTGTAGACAATTGCTTGATGTTGAAGT GGAGAATTTCCTTTCTCACTCTTTCATTGATCCAGACCTTGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATTGTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTATTTGCTCTTTAAAAA]
consensusID : consensus_12385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 305 fasta sequence
[TCATTGATCCAGACCTTGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATTGTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF312422 [TCATTGATCCAGACCTTGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATTGTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU056650 [ TGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTNATCCCAGGATTGTAGTTCATCCCTCNTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTAAAAAAAAAAAA ]
consensusID : consensus_12385#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence
[TCCAGCCCTTGAAAGGCCTTGGTTTATCCAAATGATGGCAATAAAAGTACCAGTTTCAGCATAGTTTAATCCCAGGATTGTAGTTCATCCCCCCCCCCTAGTTTATTTTAAAAAAAATTTTGGAGGGGGTATTATAAGGGTAACATTTGGTCAACTTGGGCCCCCGCAATTGTATTGAGGAAAAATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGGGGGTTATAAAGGAATTCGAAATTTAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF312421 [TCCAGCCCTTGAAAGGCCTTGGTTTATCCAAATGATGGCAATAAAAGTACCAGTTTCAGCATAGTTTAATCCCAGGATTGTAGTTCATCCCCCCCCCCTAGTTTATTTTAAAAAAAATTTTGGAGGGGGTATTATAAGGGTAACATTTGGTCAACTTGGGCCCCCGCAATTGTATTGAGGAAAAATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGGGGGTTATAAAGGAATTCGAAATTTAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 TGTGAAACCGCCACCGCCAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGC 60
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 GCACAGCAGCCGCGGCGAGTTCTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCG 120
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 GAGGCGGAGCGGGGGGAGGAGGGGGAGGCGGTGTTCGCGACGGTGCAGGCGGCGGTGGAC 180
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 GCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACAGG 240
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 GAGCCCGTCTACGTCGCCAAGGCCAAGAACCTCGTCACCCTCTCCGGCGAGGCCGGCTCG 300
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 CCCGAGGCCACCGTCATCACCTGGGACAACACCGCCACCCGCATCAAGCACTCCCAGTCG 360
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 TCCAGGGTTATTGGGACAGGAACGTTTGGATGCGGAACAATTATTGTGGAGGGGGAGGAT 420
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 TTCATCGCAGAGAATATCACATTTGAGAACTCAGCTCCTCAGGGGTCTGGGCAGGCAGTT 480
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 GCTCTCCGAGTAACAGCAGATAGGTGTGCCTTCTACAATTGCAGGTTCCTTGGTTGGCAA 540
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 GACACATTATATTTACATTATGGAAAACAATACTTAAGGGACTGTTACATCGAAGGTAAC 600
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 TGTGACTTCATCTTCGGCAACTCTATTGCCCTGTTGGAACATTGCCATATTCATTGCAAA 660
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 TCAGCGGGTTACATTACTGCTCACAGCCGGAAATCCTCATCAGAAACTACTGGTTATGTG 720
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 TTCTTGAGGTGTATTATTACTGGAAATGGAGAAGCTGGATATATGTTCCTGGGTCGGCCT 780
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 TGGGGACCGTTTGGAAGGGTTGTCTTTGCGCACACTTTTATGGATCGTTGTATTAAGCCT 840
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 GCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTTGAGTAC 900
consensus_12385#1 ------------------------------------------------------------
consensus_12385#2 ------------------------------------------------------------
consensus_12385#0 AGGTGCTCAGGGCCAGGTTTCCGCCCATCAAACCGAGTGGCTTGGTGTAGACAATTGCTT 960
consensus_12385#1 ----------------------------------TCATTGATCCAGACCTTGATAGGCCT 26
consensus_12385#2 -----------------------------------------TCCAGCCCTTGAAAGGCCT 19
consensus_12385#0 GATGTTGAAGTGGAGAATTTCCTTTCTCACTCTTTCATTGATCCAGACCTTGATAGGCCT 1020
***** ****** ******
consensus_12385#1 TGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATT 86
consensus_12385#2 TGGTTTATCCAAATGATGGCAATAAAAGTACCAGTTTCAGCATAGTTTAATCCCAGGATT 79
consensus_12385#0 TGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATT 1080
*** * ***** *********************** ********** *************
consensus_12385#1 GTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGT 146
consensus_12385#2 GTAGTTCATCCCCCCCCCCTAGTTTATTTTAAAAAAAATTTTGGAGGGGGTATTATAAGG 139
consensus_12385#0 GTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGT 1140
************ ** ******* *** *** *** ************ **********
consensus_12385#1 GTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGATATTTGTTGTTTTC 206
consensus_12385#2 GTAACATTTGGTCAACTTGGGCCCCCGCAATTGTATTGAGGAAAAATATTTGTTGTTTTC 199
consensus_12385#0 GTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGGTATTTGTTGTTTTC 1200
******************* **** ***************** * **************
consensus_12385#1 CATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTAAAAAAAAAAAAA 266
consensus_12385#2 CATGAGCCTTGTCCCTTGGGGGTTATAAAGGAATTCGAAATTTAATTTAAAAAAAAAAAA 259
consensus_12385#0 CATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTATTTGCTCTTTAA 1260
****************** ** *********** ******* **** **
consensus_12385#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 305
consensus_12385#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 296
consensus_12385#0 AAA------------------------------------ 1263
***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||