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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1305 fasta sequence
[AGGCGAGAAAGAGATTATCACTGTTGTTTTTTTCGTTTTCTTGCTTGCGGCAAGCAAAGCAAAGCTAAGCTAAGCCAGCCGAACAATGGAGAAGGCCGCTGGATTCCTCTCCTCCCTCCTCGGCGGCGGCGAGGAGGTGCCGCCAGAGCCGGCGGCGACGGTGAGGTCGATCCTGATATACCCCATCAAGTCATGCAGGGGAATCTCCGTGCCCCAGGCCCCAATCACCTCCACTGGGTTCCGGTGGGATCGGCAGTGGGTGGTGGTGAACTCCAAGGGGAGGGCCTACACGCAGAGGGTGGAGCCCAAGCTCGCGCTGGTGGAGGTGGAGATGCCGCCGGAGGCAT-TCGCCGAGGAGTGGCGGCCGACCGCCGATTCCTACTTGGTTGGAAGAGCACCTGGAATGGACCCATTGAAGATCCCTCTCAGTGCTGAACAAGCCATAATTAATGATGTCTCTGTATGGGAGTGGTCTGGTTCTGCTTATGATGAAGGAGCTGAGGCGGCCGAGTGGTTTTCCAGTTACTTCGGGAACCCAAGTCGTCTAGTGCGTTTCAAAGAAGGGTCGGAAATCAGACCAACTAATCCTGACTATGCTCAAGGCTACAAAATTATGTTTAC-AGATTGCTTCCCGTTTCTGATGGCCTCCCAGGGTTCATTGGATGCACTAAATGAGGTTCTGAAAGAACCTGTACCGATGAACCGCTTCAGGCCAAACATTTTGGTGGATGGATGCCACCCATACTCAGAGGATCTATGGAAAACCATAAAAATAAACAAGTTAACATTTCAGGGTGTCAAGTTATGCAACCGCTGCAAGGTGCCTACCATTAACCAAGAAAATGGGATACTTGGCACTGAACCAACAGAAACTCTACTGACATTCCGGTCCGATGAAGTTCTACGTCCAAGCCACAAAAACAAACGGCAGGTCTACTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGTTCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGCTGTTCAGAGACCTAGTAGTACTGTAGAATGCTGAATTTCTCGGCATCATTGTAAATTTTATGCTGCAACAAGGCTTGAGAAAATGTGTTTTATTATGTGGCAGAATAAACAGTACCATCTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK069278 [AGGCGAGAAAGAGATTATCACTGTTGTTTTTTTCGTTTTCTTGCTTGCGGCAAGCAAAGCAAAGCTAAGCTAAGCCAGCCGAACAATGGAGAAGGCCGCTGGATTCCTCTCCTCCCTCCTCGGCGGCGGCGAGGAGGTGCCGCCAGAGCCGGCGGCGACGGTGAGGTCGATCCTGATATACCCCATCAAGTCATGCAGGGGAATCTCCGTGCCCCAGGCCCCAATCACCTCCACTGGGTTCCGGTGGGATCGGCAGTGGGTGGTGGTGAACTCCAAGGGGAGGGCCTACACGCAGAGGGTGGAGCCCAAGCTCGCGCTGGTGGAGGTGGAGATGCCGCCGGAGGCAT TCGCCGAGGAGTGGCGGCCGACCGCCGATTCCTACTTGGTTGGAAGAGCACCTGGAATGGACCCATTGAAGATCCCTCTCAGTGCTGAACAAGCCATAATTAATGATGTCTCTGTATGGGAGTGGTCTGGTTCTGCTTATGATGAAGGAGCTGAGGCGGCCGAGTGGTTTTCCAGTTACTTCGGGAACCCAAGTCGTCTAGTGCGTTTCAAAGAAGGGTCGGAAATCAGACCAACTAATCCTGACTATGCTCAAGGCTACAAAATTATGTTTAC AGATTGCTTCCCGTTTCTGATGGCCTCCCAGGGTTCATTGGATGCACTAAATGAGGTTCTGAAAGAACCTGTACCGATGAACCGCTTCAGGCCAAACATTTTGGTGGATGGATGCCACCCATACTCAGAGGATCTATGGAAAACCATAAAAATAAACAAGTTAACATTTCAGGGTGTCAAGTTATGCAACCGCTGCAAGGTGCCTACCATTAACCAAGAAAATGGGATACTTGGCACTGAACCAACAGAAACTCTACTGACATTCCGGTCCGATGAAGTTCTACGTCCAAGCCACAAAAACAAACGGCAGGTCTACTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGTTCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGCTGTTCAGAGACCTAGTAGTACTGTAGAATGCTGAATTTCTCGGCATCATTGTAAATTTTATGCTGCAACAAGGCTTGAGAAAATGTGTTTTATTATGTGGCAGAATAAACAGTACCATCTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTC ]
[+] EMBL C97060 [ TTTTCTTGCTTGCGGCAAGCAAAGCAAAGCTAAGCTAAGCCAGCCGAACAATGGAGAAGGCCGCTGGATTCCTCTCCTCCCTCCTCGGCGGCGGCGAGGAGGTGCCGCCAGAGCCGGCGGCGACGGTGAGGTCGATCCTGATATACCCCATCAAGTCATGCAGGGGAATCTCCGTGCCCCAGGNCCCAATCACCTCCACTGGGTTCCGGTGGGATCGGCAGTGGGTGGTGGTGAACTCCAAGGGGAGGGCCTACACGTAGAGGGTGGAGCCCAAGNTCGCGCTGGTGGAGGTGGAGATGCCGCCGGAGaatttc ]
[-] EMBL AU029741 [ TTTCTTGCTTGCGGCAAGCAAAGCAAAGCTAAGCTAAGCCAGCCGAACAATGGAGAAGGCCGCTGGATTCCTCTCCTCCCTCCTCGGCGGCGGCGAGGAGGTGCCGCCAGAGCCGGCGGCNACGGTGAGGTCGATCCTGATATACCCCATCAAGTCATGCAGGGGAATCTCCGTGCCCCAGGCCCCAATCACCTCCACTGGGTTCCGGTGGGATCGGCAGTGGGTGGTGGTGAACTCCAAGGGGAGGGCCTACACGCAGAGGGTGGAGCCCAAGCTCGCGCTGGTGGAGGTGGAGATGCCGCCGGA GATT TCGCCGAGGAGTGGCGGCCGACCGCCGATTCCTACTTGGTTGGAAGAG ACCTTGAATn ]
[+] EMBL AK105941 [ CTAAGCCAGCCGAACAATGGAGAAGGCCGCTGGATTCCTCTCCTCCCTCCTCGGCGGCGGCGAGGAGGTGCCGCCAGAGCCGGCGGCGACGGTGAGGTCGATCCTGATATACCCCATCAAGTCATGCAGGGGAATCTCCGTGCCCCAGGCCCCAATCACCTCCACTGGGTTCCGGTGGGATCGGCAGTGGGTGGTGGTGAACTCCAAGGGGAGGGCCTACACGCAGAGGGTGGAGCCCAAGCTCGCGCTGGTGGAGGTGGAGATGCCGCCGGAGGCAT TCGCCGAGGAGTGGCGGCCGACCGCCGATTCCTACTTGGTTGGAAGAGCACCTGGAATGGACCCATTGAAGATCCCTCTCAGTGCTGAACAAGCCATAATTAATGATGTCTCTGTATGGGAGTGGTCTGGTTCTGCTTATGATGAAGGAGCTGAGGCGGCCGAGTGGTTTTCCAGTTACTTCGGGAACCCAAGTCGTCTAGTGCGTTTCAAAGAAGGGTCGGAAATCAGACCAACCAATCCTGACTATGCTCAAGGCTACAAAATTATGTTTAC AGATTGCTTCCCGTTTCTGATGGCCTCCCAGGGTTCATTGGATGCACTAAATGAGGTTCTGAAAGAACCTGTACCGATGAACCGCTTCAGGCCAAACATTTTGGTGGATGGATGCCACCCATACTCAGAGGATCTATGGAAAACCATAAAAATAAACAAGTTAACATTTCAGGGTGTCAAGTTATGCAACCGCTGCAAGGTGCCTACCATTAACCAAGAAAATGGGATACTTGGCACTGAACCAACAGAAACTCTACTGACATTCCGGTCCGATGAAGTTCTACGTCCAAGCCACAAAAACAAACGGCAGGTCTACTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGTTCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGCTGTTCAGAGACCTAGTAGTACTGTAGAATGCTGAATTTCTCGGCATCATTGTAAATTTTATGCTGCAACAAGGCTTGAGAAAATGTGTTTTATTATGTGGCAGAATAAACAGTACCATCTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAATAtagcaa ]
[+] EMBL OSS14719A [ ngngnatGATGCCGCCGGAG ATNTCGCCGAGGAGTGGCGGCCGACCG CGATTCCTACTTGGTTGGAAGAGCACCTGGAATGGACCCATTGAAGATCCCTCTCAGTGCTGAACAAGCCATAATTAATGATGTCTCTGTATGGGAGTGGTCTGGTTCTGCTTATGATGAAGGAGCTGAGGCGGCCGAGTGGTTTTCCAGTTACTTCGGGAACCCAAGTCGTCTAGTGCGTTTCAAAGAAGGGTCGGAAATCAGACCAACTAATCCTGACTATGCTCAAGGCTACAAAATTATGTTTACAAGATTGCTTCCCGTTTCTGATGGCCTCCCAGGGTTCATTGGATGCACTAAATGAGGTTCTGAAAGAcc ]
[+] EMBL AU164989 [ TGGGATACTTGGCACTGAACCAACAGAAACTCTACTGACATTCCGGTCCGATGAAGTTCTACGTCCAAGCCACAAAAACAANCGGCAGGTCTACTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGTTCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGCTGTTCAGAGNCCTAGTAGTACTGTAGAATGCTGAATTTCTCGGCATCATTGTAAATTTTATGCTGCAACAAGGCTTGAGAAAATGTGTTTTATTATGTGGCAGAATAAACAGTACCATCTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAATAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU089748 [ ATANTGGCAGCTGTTCAGNGNCCTAGTAGTNCTGTAGAATGNTGAATTTCTCGGCATCATTGTAAATTTTATGCTGCAACAAGGCTTGAGAAAATGTGTTTTATTATGTGGCAGAATAAACAGTACCATNTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF329048 [ AGGCTTGAGAAAATGCGTTTTATTATGTGGCAGAATAAACAGTACCATCTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAAAAAAA ]
[-] EMBL CF329047 [ GGCTTGAGAAAATGCGTTTTATTATGTGGCAGAATAAACAGTACCATCTGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAAAAAAAA ]
consensusID : consensus_12387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 218 fasta sequence
[TTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGTTCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGCTGTTCAGAGAGGTGTAGAAGGTCTGAATTTCTTTGCATCATTGTAAATTTTNTGCACAGGCTGAGAAAGGTATAGACAGATAACGACACTGNACTAAACGGCACATG]
[+] EMBL AA751109 [TTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGTTCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGCTGTTCAGAGAGGTGTAGAAGGTCTGAATTTCTTTGCATCATTGTAAATTTTNTGCACAGGCTGAGAAAGGTATAGACAGATAACGACACTGNACTAAACGGCACATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12387#0 AGGCGAGAAAGAGATTATCACTGTTGTTTTTTTCGTTTTCTTGCTTGCGGCAAGCAAAGC 60
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 AAAGCTAAGCTAAGCCAGCCGAACAATGGAGAAGGCCGCTGGATTCCTCTCCTCCCTCCT 120
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 CGGCGGCGGCGAGGAGGTGCCGCCAGAGCCGGCGGCGACGGTGAGGTCGATCCTGATATA 180
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 CCCCATCAAGTCATGCAGGGGAATCTCCGTGCCCCAGGCCCCAATCACCTCCACTGGGTT 240
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 CCGGTGGGATCGGCAGTGGGTGGTGGTGAACTCCAAGGGGAGGGCCTACACGCAGAGGGT 300
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 GGAGCCCAAGCTCGCGCTGGTGGAGGTGGAGATGCCGCCGGAGGCATTCGCCGAGGAGTG 360
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 GCGGCCGACCGCCGATTCCTACTTGGTTGGAAGAGCACCTGGAATGGACCCATTGAAGAT 420
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 CCCTCTCAGTGCTGAACAAGCCATAATTAATGATGTCTCTGTATGGGAGTGGTCTGGTTC 480
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 TGCTTATGATGAAGGAGCTGAGGCGGCCGAGTGGTTTTCCAGTTACTTCGGGAACCCAAG 540
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 TCGTCTAGTGCGTTTCAAAGAAGGGTCGGAAATCAGACCAACTAATCCTGACTATGCTCA 600
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 AGGCTACAAAATTATGTTTACAGATTGCTTCCCGTTTCTGATGGCCTCCCAGGGTTCATT 660
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 GGATGCACTAAATGAGGTTCTGAAAGAACCTGTACCGATGAACCGCTTCAGGCCAAACAT 720
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 TTTGGTGGATGGATGCCACCCATACTCAGAGGATCTATGGAAAACCATAAAAATAAACAA 780
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 GTTAACATTTCAGGGTGTCAAGTTATGCAACCGCTGCAAGGTGCCTACCATTAACCAAGA 840
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 AAATGGGATACTTGGCACTGAACCAACAGAAACTCTACTGACATTCCGGTCCGATGAAGT 900
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 TCTACGTCCAAGCCACAAAAACAAACGGCAGGTCTACTTTGGGCAAAATTTAGTCTGCAA 960
consensus_12387#1 ------------------------------------------------------------
consensus_12387#0 GGAATCTCTGTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGT 1020
consensus_12387#1 ---------TTCTGCAAAGGGCAAAGGAAGGATCATCAAGGTCAGCGATCCGGTTTATGT 51
**************************************************
consensus_12387#0 TCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGC 1080
consensus_12387#1 TCTTGAGAGATTCCCTTCTTCCGATGAAGCTCCAGCATGAGCAAAGGACATACTGGCAGC 111
************************************************************
consensus_12387#0 TGTTCAGAGACCTAGTAGTACTGTAGAATG-CTGAATTTCTCGGCATCATTGTAAATTTT 1139
consensus_12387#1 TGTTCAGAGA---------GGTGTAGAAGGTCTGAATTTCTTTGCATCATTGTAAATTTT 162
********** ******* * ********** *****************
consensus_12387#0 ATGCTGCAACAAGGCTTGAGAAAATGTGTTTTATTATGTGGCAGAATAAACAGTACCATC 1199
consensus_12387#1 NTGC----ACAGG--CTGAGAAAG---GTATAGACAGATAACG----ACACTGNACTAAA 209
*** *** * ******* ** * * * * * ** * ** *
consensus_12387#0 TGGCACTGAAAACTGTTGCTCATACAATTGATATTCAGTGATCATAGTTATTCCTAATAA 1259
consensus_12387#1 CGGCACATG--------------------------------------------------- 218
*****
consensus_12387#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1305
consensus_12387#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||