cluster # 12389

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Oryza sativa
cluster # 12389 cluster # 12389 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12389#0 length = 1287 sequences # 6

consensus_12389#1 length = 1261 sequences # 3
consensus_12389#2 length = 357 sequences # 1

consensusID : consensus_12389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1287
fasta sequence

                              [CGCGCGCGCGAGCGGCGGGCGGCTTTTCCGTGTTCGGTGTTTCGGTGCGGCGGCCATATATACGCGCGCGCGCTCGCGTACTACGTGCAGACGACGGACTAGTGCGTGCGTGCGTGACGCGAGAGGCTGAGAGGAGCATTTTGGCCCTTGGTTTCTTTCGGTTCTTCTGCTCTTTTTTGCTGGCGATGGGGTGGTCGTCGTCAAGGGCTATGCTCGTGGCGCGCGCTGTGGCCTTGGC-GGTGGTGTTCCTCGCGGCGGAGGCTCAGCTGTCGCCGGGGTACTACAACGCGACGTGCCCCGGG-GTGGTGTCCATCGTGCGCCGCGGCATGGCGCAGGCAGTGCAGAAGGAGTCGCGCATGGGCGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCAACGGGTGCGACGCCTCCATCTTGCTCGACGACACGGCGAACTTCACCGGGGAGAAGAACGCCGGGCCGAACGCCAACTCGGTGCGCGGGTACGAGGTCATCGACGCCATCAAGGCGCAGCTCGAGGCCTCCTGCAAGGCCACCGTCTCCTGCGCCGACATCATCACGCTCGCCGCGCGCGACGCCGTCAACCTGCTCGGGGGCCCGAACTGGACGGTGCCGCTGGGGCGGCGTGACGCGCGCACGACGAGCCAGAGCGCGGCGAACACCAACCTGCCGCCGCCCGGCGCGAGCCTCGCGTCGCTCCTGTCGATGTTCAGCGCCAAGGGCCTCGACGCGCGGGACCTCACCGCGCTGTCGGGCGCGCACACCGTCGGGTGGGCGCGCTGCTCCACCTTCCGCACGCACATCTACAACGACACCGGCGTGAACGCCACCTTCGCCTCGCAGCTGCGCACCAAGTCCTGCCCGACCACCGGCGGCGACGGCAACCTCGCGCCGCTCGAGCTGCAGGCGCCCAACACCTTCGACAACGCCTACTTCACGGACCTCCTCAGCCGCCGCGTCCTGCTGCGCTCCGACCAGGAGCTCTTCGGCAGCGGCG-CCGGCAATGGCACCACGGACGCGTTCGTGCGCGCGTACGCCGCCAACGCGACGACGT-TCGCGGCGGACTTCGCCGCCGCGATGGTGAGGCTGGGCAACCTGAGCCCGCTCACCGGGAAGAACGGCGAGGTACGGATCAACTGCCGGCGAGTGAACTCATCATGAACATGAAATGGATTCTTGATGTACGCTTCGTGAACGCCATAAACTTATTATCAAATCTTGTTTTTACCAAAAGCAAATGGAAAAAATGCTGTTCTTGCAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK105932             [CGCGCGCGCGAGCGGCGGGCGGCTTTTCCGTGTTCGGTGTTTCGGTGCGGCGGCCATATATACGCGCGCGCGCTCGCGTACTACGTGCAGACGACGGACTAGTGCGTGCGTGCGTGACGCGAGAGGCTGAGAGGAGCATTTTGGCCCTTGGTTTCTTTCGGTTCTTCTGCTCTTTTTTGCTGGCGATGGGGTGGTCGTCGTCAAGGGCTATGCTCGTGGCGCGCGCTGTGGCCTTGGC GGTGGTGTTCCTCGCGGCGGAGGCTCAGCTGTCGCCGGGGTACTACAACGCGACGTGCCCCGGG GTGGTGTCCATCGTGCGCCGCGGCATGGCGCAGGCAGTGCAGAAGGAGTCGCGCATGGGCGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCAACGGGTGCGACGCCTCCATCTTGCTCGACGACACGGCGAACTTCACCGGGGAGAAGAACGCCGGGCCGAACGCCAACTCGGTGCGCGGGTACGAGGTCATCGACGCCATCAAGGCGCAGCTCGAGGCCTCCTGCAAGGCCACCGTCTCCTGCGCCGACATCATCACGCTCGCCGCGCGCGACGCCGTCAACCTGCTCGGGGGCCCGAACTGGACGGTGCCGCTGGGGCGGCGTGACGCGCGCACGACGAGCCAGAGCGCGGCGAACACCAACCTGCCGCCGCCCGGCGCGAGCCTCGCGTCGCTCCTGTCGATGTTCAGCGCCAAGGGCCTCGACGCGCGGGACCTCACCGCGCTGTCGGGCGCGCACACCGTCGGGTGGGCGCGCTGCTCCACCTTCCGCACGCACATCTACAACGACACCGGCGTGAACGCCACCTTCGCCTCGCAGCTGCGCACCAAGTCCTGCCCGACCACCGGCGGCGACGGCAACCTCGCGCCGCTCGAGCTGCAGGCGCCCAACACCTTCGACAACGCCTACTTCACGGACCTCCTCAGCCGCCGCGTCCTGCTGCGCTCCGACCAGGAGCTCTTCGGCAGCGGCG CCGGCAATGGCACCACGGACGCGTTCGTGCGCGCGTACGCCGCCAACGCGACGACGT TCGCGGCGGACTTCGCCGCCGCGATGGTGAGGCTGGGCAACCTGAGCCCGCTCACCGGGAAGAACGGCGAGGTACGGATCAACTGCCGGCGAGTGAACTCATCATGAACATGAAATGGATTCTTGATGTACGCTTCGTGAACGCCATAAACTTATTATCAAATCTTGTTTTTACCAA                                                ]
[+] EMBL AK060687             [                                                                                             ACGGACTAGTGCGTGCGTGCGTGACGCGAGAGGCTGAGAGGAGCATTTTGGCCCTTGGTTTCTTTCGGTTCTTCTGCTCTTTTTTGCTGGCGATGGGGTGGTCGTCGTCAAGGGCTATGCTCGTGGCGCGCGCTGTGGCCTTGGC GGTGGTGTTCCTCGCGGCGGAGGCTCAGCTGTCGCCGGGGTACTACAACGCGACGTGCCCCGGG GTGGTGTCCATCGTGCGCCGCGGCATGGCGCAGGCAGTGCAGAAGGAGTCGCGCATGGGCGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCAACGGGTGCGACGCCTCCATCTTGCTCGACGACACGGCGAACTTCACCGGGGAGAAGAACGCCGGGCCGAACGCCAACTCGGTGCGCGGGTACGAGGTCATCGACGCCATCAAGGCGCAGCTCGAGGCCTCCTGCAAGGCCACCGTCTCCTGCGCCGACATCATCACGCTCGCCGCGCGCGACGCCGTCAACCTGCTCGGGGGCCCGAACTGGACGGTGCCGCTGGGGCGGCGTGACGCGCGCACGACGAGCCAGAGCGCGGCGAACACCAACCTGCCGCCGCCCGGCGCGAGCCTCGCGTCGCTCCTGTCGATGTTCAGCGCCAAGGGCCTCGACGCGCGGGACCTCACCGCGCTGTCGGGCGCGCACACCGTCGGGTGGGCGCGCTGCTCCACCTTCCGCACGCACATCTACAACGACACCGGCGTGAACGCCACCTTCGCCTCGCAGCTGCGCACCAAGTCCTGCCCGACCACCGGCGGCGACGGCAACCTCGCGCCGCTCGAGCTGCAGGCGCCCAACACCTTCGACAACGCCTACTTCACGGACCTCCTCAGCCGCCGCGTCCTGCTGCGCTCCGACCAGGAGCTCTTCGGCAGCGGCG CCGGCAATGGCACCACGGACGCGTTCGTGCGCGCGTACGCCGCCAACGCGACGACGT TCGCGGCGGACTTCGCCGCCGCGATGGTGAGGCTGGGCAACCTGAGCCCGCTCACCGGGAAGAACGGCGAGGTACGGATCAACTGCCGGCGAGTGAACTCATCATGAACATGAAATGGATTCTTGATGTACGCTTCGTGAACGCCATAAACTTATTATCAAATCTTGTTTTTACCAAAAGCAAATGGAAAAAATG                              ]
[+] EMBL CF325301             [                                                                                                   TAGTGCGTGCGTGCGTGACGCGAGAGGCTGAGAGGAGCATTTTGGCCCTTGGTTTCTTTCGGTTCTTCTGCTCTTTTTTGCTGGCGATGGGGTGGTCGTCGTCAAGGGCTATGCTCGTGGCGCGCGCTGTGGCCTTGGCNGGTGGTGTTCCTCGCGGCGGAGGCTCAGCTGTCGCCGGGGTACTACAACGCGACGTGCCCCGGGNGTGGTGTCCATCGTGCGCCGCGGCATGGCGCAGGCAGTGCAGAAGGAGTCGCGCATGGGCGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCAACGGGTGCGACGCCTCCATCTTGCTCGACGACACGGCGAACTTCACCGGGGAGAAGAACGCCGGGCCGAACGCCAACTCGGTGCGCGGGTACGAGGTCATCGACGCCATCAAGGCGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF325276             [                                                                                                   TAGTGCGTGCGTGCGTGACGCGAGAGGCTGAGAGGAGCATTTTGGCCCTTGGTTTCTTTCGGTTCTTCTGCTCTTTTTTGCTGGCGATGGGGTGGTCGTCGTCAAGGGCTATGCTCGTGGCGCGCGCTGTGGCCTTGGC GGTGGTGTTCCTCGCGGCGGAGGCTCAGCTGTCGCCGGGGTACTACAACGCGACGTGCCCCGGG GTGGTGTCCATCGTGCGCCGCGGCATGGCGCAGGCAGTGCAGAAGGAGTCGCGCATGGGCGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCAACGGGTGCGACGCCTCCATCTTGCTCGACGACACGGCGAACTTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSS4325A             [                                                                                                                        GAGAGGCTGAGAGGAGCATTTTGGCCCTTGGTTTCTTTCGGTTCTTCTGCTCTTTTTTGCTGGCGATGGGGTGGTCGTCGTCAAGGGCTATGCTCGTGGCGCGCGCTGTGGCCTTGGC GGTGGTGTTCCTCGCGGCGGAGGCTCAGCTGTCGTCGGGGTACTACAACGCGACGTGCCCCGNG GTGGTGTCCATCGTGCGCCGCGGCATGGCGCAGGCAGTGCAGAAGGAGTCGCGCATGGGCGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCAACGGGTGCGACGTCTCCATCTTGCTCGACGACACGGCGAACTTCANCGTGGAGAAGNACGCCGGG CGAACGNCAACTCGGTGNGCGGGTACGAGGTCATCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU033167             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTTCGNCAGCGGCGCCCGGCAATGGCACCACGGACGCGTTCGTGCGCGCGTACGCCGCNAACGCGACGACGTNTCG GGCGGACTTCGCCGCCGCGATGGTGAGGCTGGGCAACCTGAGCCCGCTCACCGGGAAGAACGGCGAGGTACGGATCAACTGCCGGCGAGTGAACTCATCATGAACATGAAATGGATTCTTGATGTACGCTTCGTGAACGCCATAAACTTATTATCAAATCTTGTTTTTACCAAAAGCAAATGGAAAAAATGCTGTTCTTGCAAAAAAAAAAAAAAAAAAAA]




>consensus_12389#0
CGCGCGCGCGAGCGGCGGGCGGCTTTTCCGTGTTCGGTGTTTCGGTGCGGCGGCCATATA
TACGCGCGCGCGCTCGCGTACTACGTGCAGACGACGGACTAGTGCGTGCGTGCGTGACGC
GAGAGGCTGAGAGGAGCATTTTGGCCCTTGGTTTCTTTCGGTTCTTCTGCTCTTTTTTGC
TGGCGATGGGGTGGTCGTCGTCAAGGGCTATGCTCGTGGCGCGCGCTGTGGCCTTGGCGG
TGGTGTTCCTCGCGGCGGAGGCTCAGCTGTCGCCGGGGTACTACAACGCGACGTGCCCCG
GGGTGGTGTCCATCGTGCGCCGCGGCATGGCGCAGGCAGTGCAGAAGGAGTCGCGCATGG
GCGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCAACGGGTGCGACGCCTCCA
TCTTGCTCGACGACACGGCGAACTTCACCGGGGAGAAGAACGCCGGGCCGAACGCCAACT
CGGTGCGCGGGTACGAGGTCATCGACGCCATCAAGGCGCAGCTCGAGGCCTCCTGCAAGG
CCACCGTCTCCTGCGCCGACATCATCACGCTCGCCGCGCGCGACGCCGTCAACCTGCTCG
GGGGCCCGAACTGGACGGTGCCGCTGGGGCGGCGTGACGCGCGCACGACGAGCCAGAGCG
CGGCGAACACCAACCTGCCGCCGCCCGGCGCGAGCCTCGCGTCGCTCCTGTCGATGTTCA
GCGCCAAGGGCCTCGACGCGCGGGACCTCACCGCGCTGTCGGGCGCGCACACCGTCGGGT
GGGCGCGCTGCTCCACCTTCCGCACGCACATCTACAACGACACCGGCGTGAACGCCACCT
TCGCCTCGCAGCTGCGCACCAAGTCCTGCCCGACCACCGGCGGCGACGGCAACCTCGCGC
CGCTCGAGCTGCAGGCGCCCAACACCTTCGACAACGCCTACTTCACGGACCTCCTCAGCC
GCCGCGTCCTGCTGCGCTCCGACCAGGAGCTCTTCGGCAGCGGCGCCGGCAATGGCACCA
CGGACGCGTTCGTGCGCGCGTACGCCGCCAACGCGACGACGTTCGCGGCGGACTTCGCCG
CCGCGATGGTGAGGCTGGGCAACCTGAGCCCGCTCACCGGGAAGAACGGCGAGGTACGGA
TCAACTGCCGGCGAGTGAACTCATCATGAACATGAAATGGATTCTTGATGTACGCTTCGT
GAACGCCATAAACTTATTATCAAATCTTGTTTTTACCAAAAGCAAATGGAAAAAATGCTG
TTCTTGCAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1261
fasta sequence

                              [CCACTGGTAGTACACTGCAAATATTCCTCTTGCCGTGTCACTGGCTTGCTCTGCTCGATCACGAGCTTGAACTGTGCTTGTGATCAGCGAGCAATGGCTACTCAATGGGTGCTCGTGGTGGTTGCTGTAATGGCCGTGCTCTTCGCCGGAGGCGCCGCCGGCGGGCAGCTGTCGACGAGGTACTACGACGGCAAGTGCCCGAACGTGCAGAGCATCGTGAGGGCCGGGATGGCGCAGGCCGTGGCGGCGGAGCCCCGGATGGGCGCCTCCATCCTCCGCATGTTCTTCCACGACTGCTTCGTCAACGGGTGCGACGCGTCCATCTTGCTCGACGACACGGCCAACTTCACCGGCGAAAAGAACGCCGGGCCGAACGCCAACTCGGTGCGCGGGTACGAGGTGATCGACGCCATCAAGACCCAGGTCGAGGCGTCCTGCAACGCCACCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCGCGCGACGCCGTCAACCTGCTGGGCGGGCCGACGTGGACGGTGCAGCTGGGTCGCCGCGACGCGCTGACGGCGAGCCAGAGCGCGGCGAACGGCAACCTG-CCGGGGCCGGGGTCCGACCTCGCCACG-CTCGTCACCATG-TTCGGCAACAAGGGGCTGTCGCCGCGGGACATGACGGCGCTGTCGGGCGCGCACACGCTGGGGCAGGCCCGGTGCGCCACGTTCCGCAGCCGCATCTTCGGCGACGGCAACGTCGACGCCGCCTTCGCCGCGCTCCGGCAGCAGGCGTGCCCGCAGTCCGGCGGCGACACGACGCTGGCGCCCATCGACGTGCAGACGCCCGACGCGTTCGACAACGCCTACTACGCGAACCTGGTGAAGAAGCAGGGGCTGTTCCACTCCGACCAGGAGCTGTTCAACGGCGGGTCGCAGGACGCGCTGGTGAGGAAGTACGCCGGCAACGCCGGCATGTTCGCCGCCGACTTCGCCAAGGCGATGGTGAGGATGGGCGCCCTCCTGCCGGCGGCCGGGACGCCGACCGAGGTCCGTCTGAACTGTAGGAAGGTCAACTAAAGTCAACCTGATGACGAACGTGTCCAAGAACTACAAGTGTAGTGAACAGTCAAGATGGCTGTTTCT-GCTCCTTTGGATTT-ATTTTTGTGATCTGGTTAATATTTTTATTATTTGTGGAATTAATAATGTTGCTGTAAACATCTTTTGATAGCTGCCAGTCAGTCAATGATCATCTGTAAGCATAAAAAAACGTTTGAAAATATGTTGCACA]

[+] EMBL AK073833             [CCACTGGTAGTACACTGCAAATATTCCTCTTGCCGTGTCACTGGCTTGCTCTGCTCGATCACGAGCTTGAACTGTGCTTGTGATCAGCGAGCAATGGCTACTCAATGGGTGCTCGTGGTGGTTGCTGTAATGGCCGTGCTCTTCGCCGGAGGCGCCGCCGGCGGGCAGCTGTCGACGAGGTACTACGACGGCAAGTGCCCGAACGTGCAGAGCATCGTGAGGGCCGGGATGGCGCAGGCCGTGGCGGCGGAGCCCCGGATGGGCGCCTCCATCCTCCGCATGTTCTTCCACGACTGCTTCGTCAACGGGTGCGACGCGTCCATCTTGCTCGACGACACGGCCAACTTCACCGGCGAAAAGAACGCCGGGCCGAACGCCAACTCGGTGCGCGGGTACGAGGTGATCGACGCCATCAAGACCCAGGTCGAGGCGTCCTGCAACGCCACCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCGCGCGACGCCGTCAACCTGCTGGGCGGGCCGACGTGGACGGTGCAGCTGGGTCGCCGCGACGCGCTGACGGCGAGCCAGAGCGCGGCGAACGGCAACCTG CCGGGGCCGGGGTCCGACCTCGCCACG CTCGTCACCATG TTCGGCAACAAGGGGCTGTCGCCGCGGGACATGACGGCGCTGTCGGGCGCGCACACGCTGGGGCAGGCCCGGTGCGCCACGTTCCGCAGCCGCATCTTCGGCGACGGCAACGTCGACGCCGCCTTCGCCGCGCTCCGGCAGCAGGCGTGCCCGCAGTCCGGCGGCGACACGACGCTGGCGCCCATCGACGTGCAGACGCCCGACGCGTTCGACAACGCCTACTACGCGAACCTGGTGAAGAAGCAGGGGCTGTTCCACTCCGACCAGGAGCTGTTCAACGGCGGGTCGCAGGACGCGCTGGTGAGGAAGTACGCCGGCAACGCCGGCATGTTCGCCGCCGACTTCGCCAAGGCGATGGTGAGGATGGGCGCCCTCCTGCCGGCGGCCGGGACGCCGACCGAGGTCCGTCTGAACTGTAGGAAGGTCAACTAAAGTCAACCTGATGACGAACGTGTCCAAGAACTACAAGTGTAGTGAACAGTCAAGATGGCTGTTTCT GCTCCTTTGGATTT ATTTTTGTGATCTGGTTAATATTTTTATTATTTGTGGAATTAATAATGTTGCTGTAAACATCTTTTGATAGCTGCCAGTCAGTCAATGATCATCTGTAAGCATAAAAAAACGTTTGAAAATATGTTGCACA]
[+] EMBL CA753576             [                 CAAATATTCCTCTTGCCGTGTCACTGGCTTGCTCTGCTCGATCACGAGCTTGAACTGTGCTTGTGATCAGCGAGCAATGGCTACTCAATGGGTGCTCGTGGTGGTTGCTGTAATGGCCGTGCTCTTCGCCGGAGGCGCCGCCGGCGGGCAGCTGTCGACGAGGTACTACGACGGCAAGTGCCCGAACGTGCAGAGCATCGTGAGGGCCGGGATGGCGCAGGCCGTGGCGGCGGAGCCCCGGATGGGCGCCTCCATCCTCCGCATGTTCTTCCACGACTGCTTCGTCAACGGGTGCGACGCGTCCATCTTGCTCGACGACACGGCCAACTTCACCGGCGAAAAGAACGCCGGGCCGAACGCCAACTCGGTGCGCGGGTACGAGGTGATCGACGCCATCAAGACCCAGGTCGAGGCGTCCTGCAACGCCACCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCGCGCGACGCCGTCAACCTGCTGGGCGGGCCGACGTGGACGGTGCAGCTGGGTCGCCGCCACGCGCTGACGGCGAGCCAGAGCGCGGCGAACGGCAACCTGCCCGGGGCCGGGGGTCGACCTCGCCACGCCTCGTCACCATGTTTCGGC ACAAGGGGCTGTCNNCCCGGacctta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL D42357               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TAGGAAGGTCAACTAAAGTCAACCTGATGACGAACGTGTCCAAGAACTACAAGTGTAGTGAACAGTCAAGATGG GGTTTCTGGCTCCTTTGGATTTGATTTTTGTGATCTGGTTAATATTTTTATTATTTGTGGAATTAATAATGTTGCTGTAAACATCTTTTGATAGCTGCCAGTCAGTCAATGATCATCTGTAAGCATAAAAAAACGTTTGA              ]




>consensus_12389#1
CCACTGGTAGTACACTGCAAATATTCCTCTTGCCGTGTCACTGGCTTGCTCTGCTCGATC
ACGAGCTTGAACTGTGCTTGTGATCAGCGAGCAATGGCTACTCAATGGGTGCTCGTGGTG
GTTGCTGTAATGGCCGTGCTCTTCGCCGGAGGCGCCGCCGGCGGGCAGCTGTCGACGAGG
TACTACGACGGCAAGTGCCCGAACGTGCAGAGCATCGTGAGGGCCGGGATGGCGCAGGCC
GTGGCGGCGGAGCCCCGGATGGGCGCCTCCATCCTCCGCATGTTCTTCCACGACTGCTTC
GTCAACGGGTGCGACGCGTCCATCTTGCTCGACGACACGGCCAACTTCACCGGCGAAAAG
AACGCCGGGCCGAACGCCAACTCGGTGCGCGGGTACGAGGTGATCGACGCCATCAAGACC
CAGGTCGAGGCGTCCTGCAACGCCACCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCG
CGCGACGCCGTCAACCTGCTGGGCGGGCCGACGTGGACGGTGCAGCTGGGTCGCCGCGAC
GCGCTGACGGCGAGCCAGAGCGCGGCGAACGGCAACCTGCCGGGGCCGGGGTCCGACCTC
GCCACGCTCGTCACCATGTTCGGCAACAAGGGGCTGTCGCCGCGGGACATGACGGCGCTG
TCGGGCGCGCACACGCTGGGGCAGGCCCGGTGCGCCACGTTCCGCAGCCGCATCTTCGGC
GACGGCAACGTCGACGCCGCCTTCGCCGCGCTCCGGCAGCAGGCGTGCCCGCAGTCCGGC
GGCGACACGACGCTGGCGCCCATCGACGTGCAGACGCCCGACGCGTTCGACAACGCCTAC
TACGCGAACCTGGTGAAGAAGCAGGGGCTGTTCCACTCCGACCAGGAGCTGTTCAACGGC
GGGTCGCAGGACGCGCTGGTGAGGAAGTACGCCGGCAACGCCGGCATGTTCGCCGCCGAC
TTCGCCAAGGCGATGGTGAGGATGGGCGCCCTCCTGCCGGCGGCCGGGACGCCGACCGAG
GTCCGTCTGAACTGTAGGAAGGTCAACTAAAGTCAACCTGATGACGAACGTGTCCAAGAA
CTACAAGTGTAGTGAACAGTCAAGATGGCTGTTTCTGCTCCTTTGGATTTATTTTTGTGA
TCTGGTTAATATTTTTATTATTTGTGGAATTAATAATGTTGCTGTAAACATCTTTTGATA
GCTGCCAGTCAGTCAATGATCATCTGTAAGCATAAAAAAACGTTTGAAAATATGTTGCAC
A

consensusID : consensus_12389#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence

                              [GATTCGGCACGAGGGCACCACGGACGCGTTCGTGCGCGCGTACGCCGCCAACGCGACGACGTTCGCGGCGGACTTCGCCGCCGCGATGGTGAGGCTGGGCAACCTGAGCCCGCTCACCGGGAAGAACGGCGAGGTACGGATCAACTGCCGGCGAGTGAACTCATCATGAACATGAAATGGATTCTTGATGTACGCTTCGTGAACGCCATAAACTTATTATCAAATCTTGTTTTTACCAATAGTTTATGGAAAAAATGCTGCTCTTGCACTGATTTTTCTCCAAATTTCGATCGAAGCGAGCAGCACACACAAAACTCTGCCATGAACCGATTCATGGCGGAGTGGGGTTTTAGTCCG]

[+] EMBL CA998907             [GATTCGGCACGAGGGCACCACGGACGCGTTCGTGCGCGCGTACGCCGCCAACGCGACGACGTTCGCGGCGGACTTCGCCGCCGCGATGGTGAGGCTGGGCAACCTGAGCCCGCTCACCGGGAAGAACGGCGAGGTACGGATCAACTGCCGGCGAGTGAACTCATCATGAACATGAAATGGATTCTTGATGTACGCTTCGTGAACGCCATAAACTTATTATCAAATCTTGTTTTTACCAATAGTTTATGGAAAAAATGCTGCTCTTGCACTGATTTTTCTCCAAATTTCGATCGAAGCGAGCAGCACACACAAAACTCTGCCATGAACCGATTCATGGCGGAGTGGGGTTTTAGTCCG]




>consensus_12389#2
GATTCGGCACGAGGGCACCACGGACGCGTTCGTGCGCGCGTACGCCGCCAACGCGACGAC
GTTCGCGGCGGACTTCGCCGCCGCGATGGTGAGGCTGGGCAACCTGAGCCCGCTCACCGG
GAAGAACGGCGAGGTACGGATCAACTGCCGGCGAGTGAACTCATCATGAACATGAAATGG
ATTCTTGATGTACGCTTCGTGAACGCCATAAACTTATTATCAAATCTTGTTTTTACCAAT
AGTTTATGGAAAAAATGCTGCTCTTGCACTGATTTTTCTCCAAATTTCGATCGAAGCGAG
CAGCACACACAAAACTCTGCCATGAACCGATTCATGGCGGAGTGGGGTTTTAGTCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12389#0      CGCGCGCGCGAGCGGCGGGCGGCTTTTCCGTGTTCGGTGTTTCGGTGCGGCGGCCATATA 60
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      ------------------------------------------------------------
                                                                                   

consensus_12389#0      TACGCGCGCGCGCTCGCGTACTACGTGCAGACGACGGACTAGTGCGTGCGTGCGTGACGC 120
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      --------------------------------------CCACTGGTAGTACACTGCAAAT 22
                                                                                   

consensus_12389#0      GAGAGGCTGAGAGGAGCATTTTGGCCCTTGGTTTCTTTCGGTTCTTCTGCTCTTTTTTGC 180
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      ATTCCTCTTGCCGTGTCACTGGCTTGCTCTGCTCGATCACGAGCTTGAACTGTGCTTGTG 82
                                                                                   

consensus_12389#0      TGGCGATGGGGTGGTCGTCGTCAAGGGCTATGCTCGTGGCGCGCGCTGTGGCCTTGGCGG 240
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      ATCAGCGAGCAATGGCTACTCAATGGGTGCTCGTGGTGGTTGCTGTAATGGCCGTGCTCT 142
                                                                                   

consensus_12389#0      TGGTGTTCCTCGCGGCGGAGGCTCAGCTGTCGCCGGGGTACTACAACGCGACGTGCCCCG 300
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      TCGCCGGAGGCGCCGCCGGCGGGCAGCTGTCGACGAGGTACTACGACGGCAAGTGCCCGA 202
                                                                                   

consensus_12389#0      GGGTGGTGTCCATCGTGCGCCGCGGCATGGCGCAGGCAGTGCAGAAGGAGTCGCGCATGG 360
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      ACGTGCAGAGCATCGTGAGGGCCGGGATGGCGCAGGCCGTGGCGGCGGAGCCCCGGATGG 262
                                                                                   

consensus_12389#0      GCGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCAACGGGTGCGACGCCTCCA 420
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      GCGCCTCCATCCTCCGCATGTTCTTCCACGACTGCTTCGTCAACGGGTGCGACGCGTCCA 322
                                                                                   

consensus_12389#0      TCTTGCTCGACGACACGGCGAACTTCACCGGGGAGAAGAACGCCGGGCCGAACGCCAACT 480
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      TCTTGCTCGACGACACGGCCAACTTCACCGGCGAAAAGAACGCCGGGCCGAACGCCAACT 382
                                                                                   

consensus_12389#0      CGGTGCGCGGGTACGAGGTCATCGACGCCATCAAGGCGCAGCTCGAGGCCTCCTGCAAGG 540
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      CGGTGCGCGGGTACGAGGTGATCGACGCCATCAAGACCCAGGTCGAGGCGTCCTGCAACG 442
                                                                                   

consensus_12389#0      CCACCGTCTCCTGCGCCGACATCATCACGCTCGCCGCGCGCGACGCCGTCAACCTGCTCG 600
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      CCACCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCGCGCGACGCCGTCAACCTGCTGG 502
                                                                                   

consensus_12389#0      GGGGCCCGAACTGGACGGTGCCGCTGGGGCGGCGTGACGCGCGCACGACGAGCCAGAGCG 660
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      GCGGGCCGACGTGGACGGTGCAGCTGGGTCGCCGCGACGCGCTGACGGCGAGCCAGAGCG 562
                                                                                   

consensus_12389#0      CGGCGAACACCAACCTGCCGCCGCCCGGCGCGAGCCTCGCGTCGCTCCTGTCGATGTTCA 720
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      CGGCGAACGGCAACCTGCCGGGGCCGGGGTCCGACCTCGCCACGCTCGTCACCATGTTCG 622
                                                                                   

consensus_12389#0      GCGCCAAGGGCCTCGACGCGCGGGACCTCACCGCGCTGTCGGGCGCGCACACCGTCGGGT 780
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      GCAACAAGGGGCTGTCGCCGCGGGACATGACGGCGCTGTCGGGCGCGCACACGCTGGGGC 682
                                                                                   

consensus_12389#0      GGGCGCGCTGCTCCACCTTCCGCACGCACATCTACAACGACACCGGCGTGAACGCCACCT 840
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      AGGCCCGGTGCGCCACGTTCCGCAGCCGCATCTTCGGCGACGGCAACGTCGACGCCGCCT 742
                                                                                   

consensus_12389#0      TCGCCTCGCAGCTGCGCACCAAGTCCTGCCCGACCACCGGCGGCGACGGCAACCTCGCGC 900
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      TCGCCGCGCTCCGGCA---GCAGGCGTGCCCGCAGTCCGGCGGCGACACGACGCTGGCGC 799
                                                                                   

consensus_12389#0      CGCTCGAGCTGCAGGCGCCCAACACCTTCGACAACGCCTACTTCACGGACCTCCTCAGCC 960
consensus_12389#2      ------------------------------------------------------------
consensus_12389#1      CCATCGACGTGCAGACGCCCGACGCGTTCGACAACGCCTACTACGCGAACCTGGTGAAGA 859
                                                                                   

consensus_12389#0      GCCGCGTCCTGCTGCGCTCCGACCAGGAGCTCTTCGGCAGCGGCGCCGGCA--ATGGCAC 1018
consensus_12389#2      ------------------------------------------GATTCGGCACGAGGGCAC 18
consensus_12389#1      AGCAGGGGCTGTTCCACTCCGACCAGGAGCT------------GTTCAACGGCGGGTCGC 907
                                                                     *  *     * * *

consensus_12389#0      CACGGACGCGTTCGTGCGCGCGTACGCCGCCAACGCGACGACGTTCGCGGCGGACTTCGC 1078
consensus_12389#2      CACGGACGCGTTCGTGCGCGCGTACGCCGCCAACGCGACGACGTTCGCGGCGGACTTCGC 78
consensus_12389#1      A--GGACGCGCTGGTGAGGAAGTACGCCGGCAACGCCGGCATGTTCGCCGCCGACTTCGC 965
                          ******* * *** *   ******** ******    * ****** ** ********

consensus_12389#0      CGCCGCGATGGTGAGGCTGGGCAACCTGAGCCCGCTCACCGGGAAGAACGGCGAGGTACG 1138
consensus_12389#2      CGCCGCGATGGTGAGGCTGGGCAACCTGAGCCCGCTCACCGGGAAGAACGGCGAGGTACG 138
consensus_12389#1      CAAGGCGATGGTGAGGATGGGCGCCCTCCTGCCGGCGGCCGGGACGCCGACCGAGGTCCG 1025
                       *   ************ *****  ***    ***    ****** *     ****** **

consensus_12389#0      GATCAACTGCCGGCGAGTGAACTCATCATGAAC--ATGA--AATGGATTCTTGATGTAC- 1193
consensus_12389#2      GATCAACTGCCGGCGAGTGAACTCATCATGAAC--ATGA--AATGGATTCTTGATGTAC- 193
consensus_12389#1      TCTGAACTGTAGGAAGGTCAACTAAAGTCAACCTGATGACGAACGTGTCCAAGAACTACA 1085
                         * *****  **   ** **** *     * *  ****  ** *  * *  **  *** 

consensus_12389#0      -GCTTCGTGAAC-GCCATAA--ACTTATTATCAAATCTTGTTTTTACCAAAAGCAAATGG 1249
consensus_12389#2      -GCTTCGTGAAC-GCCATAA--ACTTATTATCAAATCTTGTTTTTACCAATAGTTTATGG 249
consensus_12389#1      AGTGTAGTGAACAGTCAAGATGGCTGTTTCTGCTCCTTTGGATTTATTTTTGTGATCTGG 1145
                        *  * ****** * **  *   **  ** *      ***  ****           ***

consensus_12389#0      AAAAAAT----GCTGTTCTTG----CAAAAAAAAAAAAAAAAAAAA-------------- 1287
consensus_12389#2      AAAAAAT----GCTGCTCTTG----CACTGATTTTTCTCCAAATTTCGATCGAAGCGAGC 301
consensus_12389#1      TTAATATTTTTATTATTTGTGGAATTAATAATGTTGCTGTAAACATCTTTTGATAGCTGC 1205
                         ** **      *  *  **     *   *         ***                 

consensus_12389#0      ----------------------------------------------------------
consensus_12389#2      AGCACACACAAAACTCTGCCATGAACCGATTCATGGCGGAGTGGGGTTTTAGTCCG-- 357
consensus_12389#1      CAGTCAGTCAATGATCATCTGTAAGC--ATAAAAAAACGTTTGAAAATATGTTGCACA 1261