cluster # 12398

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Oryza sativa
cluster # 12398 cluster # 12398 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12398#0 length = 2279 sequences # 8

consensus_12398#1 length = 364 sequences # 2

consensusID : consensus_12398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2279
fasta sequence

                              [AGGGAGGCGAGTGGAGTGCGTGTCGACGTGTCCTACTCATCCACGCCACGTAACCAATTCCATCTCCGGCCGCCGCCGATGGCCTCGCGCTCCCGGTGGTCGGCGCTGGCGGCGAGCGCGCTCATCCAGTGCTTCGCGGGGAGCTCCTACTGCTTCGCCGTCTACTCCCCGGCGCTCAAGGCCTCCCAGTCCTACGACCAGTCCGCCCTCGACAAGGTCGCCTTCTTCAAGGACGTCGGCGCCAACGCCGGCATCCTCTCCGGCCTCCTCGCCGCATGGGCCCCCGCCGGCCGCCGCCGCCCCTGGCTCGTCCTCCTCGCCGGCGCCGCCCTCTGCGCCGTCGGCTACCTCCCCATCTGGCTCGCCGTCACGGGGGTCGCCCCGGCGCCGCTCCCTCTCCTCTGCCTCTACATGCTGCTCGCCGCGCAGGCGCAGACCTTCCTCAACACCGCCGATGTCGTCACCGCCGTCGAGAATTTCCCCGATCGACGAGGCACCGTCATCGGCATCATGAAGGGCTTTCTGGGATTAAGTGGAGCAATACTGGTCCAAGTATACCGCACCATCCACATTGCTCCCAGCACTTTCATACTGATGTTGGCGATATTGCCCACTGCCATCACCCTGCTGCTTATGTATTTTGTCGATGTCCACCGTTCTGATCATCAACGGTACAACAAGAAGTTCATGGATGCTTTCTCCCTCATTGCCATTACTGTTGCTGGTTATCTAATGATCATCATAATCTGTGACCAAGTATTGAAGATAATAAGTTCAGCTGTGCAGACTGTTTGCTTTGTGATACTCCTACTGTTGGTCCTGTCTCCAGTGGCTATTGCTGTGAAGGCCCAGAAGACAGAATCAATGAAGCAAGAAGAAGAAACCAGGGATCAAGCTGAAAGAATCGGACTACTCCAAGAGCAAATTAGTACAAATGCCAGCTCCAGTAGCGATGAGCGATGTCAAGAACTGTCGACAGGCAAAGAAAACATGAATCTGGTGCAGGCAATGTGCAAGCTGAACTTCTGGCTGCTGTTCCTAGCAATGTCCTGTGGGATGGGATCAGGGCTTGCAACGGTGAACAACATCAGCCAGATCGGCGGCTCCCTCGGGTACTCGACCAAGGAGACGAGCACACTGGTGTCACTCTGGAGCATCTGGAACTTCTCAGGGAGGTTTGGTGCCGGCTACATATCCGACCACTTCCTCCGTTCGCGGGGAGTCGGTCGCCCTTTCTTCATCGGCGTCACGCTCCTGGTCATGAGCTTGGGCCACGCCATCATCGCCTCCGGCATCCTGGCGTCGCTCTACGTCGGGTCGGTGCTCGTCGGTCTTTGCTATGGGTGT-CAGTGGGCACTGATGCCGAGCATCACGTCGGAGATATTCGGGCTGAACCATTTCGGCACCATCTTCAACGTGGTGGCGGTGGCGAGCCCCGTGGGATCTTACATCCTCTCGGTGAGGGTGGTGGGTTACATCTACGACATGGAGTCGCCGCCGGGAGCTCGTGCCTGCTCCGGTAACCATTGCTTCGTTTTGTCGTTCGTCATCATGGCGTGTGTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTATAAA-C-GGGTTGTGTACGCCAGGTTGCAATCTTTTCTATAGAGAGAGAAACGAACCGATTCTTTTCTAGCAAATGCTTACCTATCTTTTACAAGCAAC-AGGATTTGATCTGTACCTGTACGTCAGAGAATGGTAGAAAGCAGAGGCACACTACTTTCTGCTGCCATTTTTTTCTTGTTGAAAAGACATCATTGGACTGGTCACTGGTGTTATATACTACTAGTACTTGTATGTATGCGTAGAAGTAAAAGGAAAATAAAACAATGTACAGGGAAGAAGCTACAGAAAACAAACAGCATTTGCTTCGTCAGAAAATTATAGCAGAGCTGACTTAACACAAAGAAATCAGTTCGTGCAACCAGCTGGCTGGGGTAATTTTTTCAAGGGAATAGGCTTGGAGAGCTCTGCCTTTTATGCTGATTCAGAAAGTAGAGAATAGTTCAGTTCTAAGCACATGAAAGCTACATTGTTACAGAGTGGATTTGTCAGCTGACAACTGTATATACCAGCTGCTTTGCCCCTCGCCGGATGCGGTACAGGAGGAAAAGGCCCAGGCCACAGCGAGAGAAAAGGCCCAGCTACAAGTATGCAGGTCCAAAATGGGCTCTGTAATATGGGCCAAGGCCGGGAAAGTGAATTCATCTAAATAGTCATGTCACCTA]

[+] EMBL AK073779             [AGGGAGGCGAGTGGAGTGCGTGTCGACGTGTCCTACTCATCCACGCCACGTAACCAATTCCATCTCCGGCCGCCGCCGATGGCCTCGCGCTCCCGGTGGTCGGCGCTGGCGGCGAGCGCGCTCATCCAGTGCTTCGCGGGGAGCTCCTACTGCTTCGCCGTCTACTCCCCGGCGCTCAAGGCCTCCCAGTCCTACGACCAGTCCGCCCTCGACAAGGTCGCCTTCTTCAAGGACGTCGGCGCCAACGCCGGCATCCTCTCCGGCCTCCTCGCCGCATGGGCCCCCGCCGGCCGCCGCCGCCCCTGGCTCGTCCTCCTCGCCGGCGCCGCCCTCTGCGCCGTCGGCTACCTCCCCATCTGGCTCGCCGTCACGGGGGTCGCCCCGGCGCCGCTCCCTCTCCTCTGCCTCTACATGCTGCTCGCCGCGCAGGCGCAGACCTTCCTCAACACCGCCGATGTCGTCACCGCCGTCGAGAATTTCCCCGATCGACGAGGCACCGTCATCGGCATCATGAAGGGCTTTCTGGGATTAAGTGGAGCAATACTGGTCCAAGTATACCGCACCATCCACATTGCTCCCAGCACTTTCATACTGATGTTGGCGATATTGCCCACTGCCATCACCCTGCTGCTTATGTATTTTGTCGATGTCCACCGTTCTGATCATCAACGGTACAACAAGAAGTTCATGGATGCTTTCTCCCTCATTGCCATTACTGTTGCTGGTTATCTAATGATCATCATAATCTGTGACCAAGTATTGAAGATAATAAGTTCAGCTGTGCAGACTGTTTGCTTTGTGATACTCCTACTGTTGGTCCTGTCTCCAGTGGCTATTGCTGTGAAGGCCCAGAAGACAGAATCAATGAAGCAAGAAGAAGAAACCAGGGATCAAGCTGAAAGAATCGGACTACTCCAAGAGCAAATTAGTACAAATGCCAGCTCCAGTAGCGATGAGCGATGTCAAGAACTGTCGACAGGCAAAGAAAACATGAATCTGGTGCAGGCAATGTGCAAGCTGAACTTCTGGCTGCTGTTCCTAGCAATGTCCTGTGGGATGGGATCAGGGCTTGCAACGGTGAACAACATCAGCCAGATCGGCGGCTCCCTCGGGTACTCGACCAAGGAGACGAGCACACTGGTGTCACTCTGGAGCATCTGGAACTTCTCAGGGAGGTTTGGTGCCGGCTACATATCCGACCACTTCCTCCGTTCGCGGGGAGTCGGTCGCCCTTTCTTCATCGGCGTCACGCTCCTGGTCATGAGCTTGGGCCACGCCATCATCGCCTCCGGCATCCTGGCGTCGCTCTACGTCGGGTCGGTGCTCGTCGGTCTTTGCTATGGGTGT CAGTGGGCACTGATGCCGAGCATCACGTCGGAGATATTCGGGCTGAACCATTTCGGCACCATCTTCAACGTGGTGGCGGTGGCGAGCCCCGTGGGATCTTACATCCTCTCGGTGAGGGTGGTGGGTTACATCTACGACATGGAGTCGCCGCCGGGAGCTCGTGCCTGCTCCGGTAACCATTGCTTCGTTTTGTCGTTCGTCATCATGGCGTGTGTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTATAAA C GGGTTGTGTACGCCAGGTTGCAATCTTTTCTATAGAGAGAGAAACGAACCGATTCTTTTCTAGCAAATGCTTACCTATCTTTTACAAGCAAC AGGATTTGATCTGTACCTGTACGTCAGAGAATGGTAGAAAGCAGAGGCACACTACTTTCTGCTGCCATTTTTTTCTTGTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK063391             [                          CGTGTCCTACTCATCCACGCCACGTAACCAATTCCATCTCCGGCCGCCGCCGATGGCCTCGCGCTCCCGGTGGTCGGCGCTGGCGGCGAGCGCGCTCATCCAGTGCTTCGCGGGGAGCTCCTACTGCTTCGCCGTCTACTCCCCGGCGCTCAAGGCCTCCCAGTCCTACGACCAGTCCGCCCTCGACAAGGTCGCCTTCTTCAAGGACGTCGGCGCCAACGCCGGCATCCTCTCCGGCCTCCTCGCCGCATGGGCCCCCGCCGGCCGCCGCCGCCCCTGGCTCGTCCTCCTCGCCGGCGCCGCCCTCTGCGCCGTCGGCTACCTCCCCATCTGGCTCGCCGTCACGGGGGTCGCCCCGGCGCCGCTCCCTCTCCTCTGCCTCTACATGCTGCTCGCCGCGCAGGCGCAGACCTTCCTCAACACCGCCGATGTCGTCACCGCCGTCGAGAATTTCCCCGATCGACGAGGCACCGTCATCGGCATCATGAAGGGCTTTCTGGGATTAAGTGGAGCAATACTGGTCCAAGTATACCGCACCATCCACATTGCTCCCAGCACTTTCATACTGATGTTGGCGATATTGCCCACTGCCATCACCCTGCTGCTTATGTATTTTGTCGATGTCCACCGTTCTGATCATCAACGGTACAACAAGAAGTTCATGGATGCTTTCTCCCTCATTGCCATTACTGTTGCTGGTTATCTAATGATCATCATAATCTGTGACCAAGTATTGAAGATAATAAGTTCAGCTGTGCAGACTGTTTGCTTTGTGATACTCCTACTGTTGGTCCTGTCTCCAGTGGCTATTGCTGTGAAGGCCCAGAAGACAGAATCAATGAAGCAAGAAGAAGAAACCAGGGATCAAGCTGAAAGAATCGGACTACTCCAAGAGCAAATTAGTACAAATGCCAGCTCCAGTAGCGATGAGCGATGTCAAGAACTGTCGACAGGCAAAGAAAACATGAATCTGGTGCAGGCAATGTGCAAGCTGAACTTCTGGCTGCTGTTCCTAGCAATGTCCTGTGGGATGGGATCAGGGCTTGCAACGGTGAACAACATCAGCCAGATCGGCGGCTCCCTCGGGTACTCGACCAAGGAGACGAGCACACTGGTGTCACTCTGGAGCATCTGGAACTTCTCAGGGAGGTTTGGTGCCGGCTACATATCCGACCACTTCCTCCGTTCGCGGGGAGTCGGTCGCCCTTTCTTCATCGGCGTCACGCTCCTGGTCATGAGCTTGGGCCACGCCATCATCGCCTCCGGCATCCTGGCGTCGCTCTACGTCGGGTCGGTGCTCGTCGGTCTTTGCTATGGGTGT CAGTGGGCACTGATGCCGAGCATCACGTCGGAGATATTCGGGCTGAACCATTTCGGCACCATCTTCAACGTGGTGGCGGTGGCGAGCCCCGTGGGATCTTACATCCTCTCGGTGAGGGTGGTGGGTTACATCTACGACATGGAGTCGCCGCCGGGAGCTCGTGCCTGCTCCGGTAACCATTGCTTCGTTTTGTCGTTCGTCATCATGGCGTGTGTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTATAAA C GGGTTGTGTACGCCAGGTTGCAATCTTTTCTATAGAGAGAGAAACGAACCGATTCTTTTCTAGCAAATGCTTACCTATCTTTTACAAGCAAC AGGATTTGATCTGTACCTGTACGTCAGAGAATGGTAGAAAGCAGAGGCACACTACTTTCTGCTGCCATTTTTTTCTTGTTGAAAAGACATCATTGGACTGGTCACTGGTGTTATATACTACTAGTACTTGTATGTATGCGTAGAAGTAAAAGGAAAATAAAACAATGTACAGGGAAGAAGCTACAGAAAACAAACAGCATTTGCTTCGTCAGAAAATTATAGCAGAGCTGACTTAACACAAAGAAATCAGTTCGTGCAACCAGCTGGCTGGGGTAATTTTTTCAAGGGAATAGGCTTGGAGAGCTCTGCCTTTTATGCTGATTCAGAAAGTAGAGAATAGTTCAGTTCTAAGCACATGAAAGCTACATTGTTACAGAGTGGATTTGTCAGCTGACAACTGTATATACCAGCTGCTTTGCCCCTCGCCGGATGCGGTACAGGAGGAAAAGGCCCAGGCCACAGCGAGAGAAAAGGCCCAGCTACAAGTATGCAGGTCCAAAATGGGCTCTGTAATATGGGCCAAGGCCGGGAAAGTGAATTCATCTAAATAGTCATGTCACCTA]
[+] EMBL AK060068             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTTGGCGATATTGCCCACTGCCATCACCCTGCTGCTTATGTATTTTGTCGATGTCCACCGTTCTGATCATCAACGGTACAACAAGAAGTTCATGGATGCTTTCTCCCTCATTGCCATTACTGTTGCTGGTTATCTAATGATCATCATAATCTGTGACCAAGTATTGAAGATAATAAGTTCAGCTGTGCAGACTGTTTGCTTTGTGATACTCCTACTGTTGGTCCTGTCTCCAGTGGCTATTGCTGTGAAGGCCCAGAAGACAGAATCAATGAAGCAAGAAGAAGAAACCAGGGATCAAGCTGAAAGAATCGGACTACTCCAAGAGCAAATTAGTACAAATGCCAGCTCCAGTAGCGATGAGCGATGTCAAGAACTGTCGACAGGCAAAGAAAACATGAATCTGGTGCAGGCAATGTGCAAGCTGAACTTCTGGCTGCTGTTCCTAGCAATGTCCTGTGGGATGGGATCAGGGCTTGCAACGGTGAACAACATCAGCCAGATCGGCGGCTCCCTCGGGTACTCGACCAAGGAGACGAGCACACTGGTGTCACTCTGGAGCATCTGGAACTTCTCAGGGAGGTTTGGTGCCGGCTACATATCCGACCACTTCCTCCGTTCGCGGGGAGTCGGTCGCCCTTTCTTCATCGGCGTCACGCTCCTGGTCATGAGCTTGGGCCACGCCATCATCGCCTCCGGCATCCTGGCGTCGCTCTACGTCGGGTCGGTGCTCGTCGGTCTTTGCTATGGGTGT CAGTGGGCACTGATGCCGAGCATCACGTCGGAGATATTCGGGCTGAACCATTTCGGCACCATCTTCAACGTGGTGGCGGTGGCGAGCCCCGTGGGATCTTACATCCTCTCGGTGAGGGTGGTGGGTTACATCTACGACATGGAGTCGCCGCCGGGAGCTCGTGCCTGCTCCGGTAACCATTGCTTCGTTTTGTCGTTCGTCATCATGGCGTGTGTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTATAAA C GGGTTGTGTACGCCAGGTTGCAATCTTTTCTATAGAGAGAGAAACGAACCGATTCTTTTCTAGCAAATGCTTACCTATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA763531             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGTTATCTAATGATCATCATAATCTGTGACCAAGTATTGAAGATAATAAGTTCAGCTGTGCAGACTGTTTGCTTTGTGATACTCCTACTGTTGGTCCTGTCTCCAGTGGCTATTGCTGTGAAGGCCCAGAAGACAGAATCAATGAAGCAAGAAGAAGAAACCAGGGATCAAGCTGAAAGAATCGGACTACTCCAAGAGCAAATTAGTACAAATGCCAGCTCGAGTAGCGATGAGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB673597             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAAGAATCGGACTACTCCAAGAGCAAATTAGTACAAATGCCAGCTCCAGTAGCGATGAGCGATGTCAAGAACTGTCGACAGGCAAAGAAAACATGAATCTGGTGCAGGCAATGTGCAAGCTGAACTTCTGGCTGCTGTTCCTAGCAATGTCCTGTGGGATGGGATCAGGGCTTGCAACGGTGAACAACATCAGCCAGATCGGCGGCTCCCTCGGGTACTCGACCAAGGAGACGAGCACACTGGTGTCACTCTGGAGCATCTGGAACTTCTCAGGGAGGTTTGGTGCCGGCTACATATCCGACCACTTCCTCCGTTCGCGGGGAGTCGGTCGCCCTTTCTTCATCGGCGTCACGCTCCTGGTCATGAGCTTGGGCCACGCCATCATCGCCTCCGGCATCCTGGCGTCGCTCTACGTCGGGTCGGTGCTCGTCGGTCTTTGCTATGGGTGT CAGTGGGCACTGATGCCGAGCATCACGTCGGAGATATTCGGGCTGAACCATTTCGGCACCATCTTCAACGTGGTGGCGGTGGCGAGCCCCGTGGGATCTTACATCCTCTCGGTGAGGGTGGTGGGTTACATCTACGACATGGAGTCGCCGCCGGGAGCTCGTGCCTGCTCCGGTAACCATTGCTTCGTTTTGTCGTTCGTCATCATGGCGTGTGTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTATAAA CGGGGTTGTGTACGCCAGGTTGCAATCTTTTCTATAGAGAGAGAAACGAACCGATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB673596             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATGAATCTGGTGCAGGCAATGTGCAAGCTGAACTTCTGGCTGCTGTTCCTAGCAATGTCCTGTGGGATGGGATCAGGGCTTGCAACGGTGAACAACATCAGCCAGATCGGCGGCTCCCTCGGGTACTCGACCAAGGAGACGAGCACACTGGTGTCACTCTGGAGCATCTGGAACTTCTCAGGGAGGTTTGGTGCCGGCTACATATCCGACCACTTCCTCCGTTCGCGGGGAGTCGGTCGCCCTTTCTTCATCGGCGTCACGCTCCTGGTCATGAGCTTGGGCCACGCCATCATCGCCTCCGGCATCCTGGCGTCGCTCTACGTCGGGTCGGTGCTCGTCGGTCTTTGCTATGGGTGT CAGTGGGCACTGATGCCGAGCATCACGTCGGAGATATTCGGGCTGAACCATTTCGGCACCATCTTCAACGTGGTGGCGGTGGCGAGCCCCGTGGGATCTTACATCCTCTCGGTGAGGGTGGTGGGTTACATCTACGACATGGAGTCGCCGCCGGGAGCTCGTGCCTGCTCCGGTAACCATTGCTTCGTTTTGTCGTTCGTCATCATGGCGGGTGTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTATAAA CGGGGTTGTGTACGCCAGGTTGCAATCTTTTTTAAAGGGGGAGAAACGACCCGATTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA767569             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCAGCCAGATCGGCGGCTCCCTCGGGTACTCGACC AGGAGACGAGCACACTGGTGTCACTCTGGAGCATCTGGAACTTCTCAGGGAGGTTTGGTGCCGGCTACATATCCGACCACTTCCTCCGTTCGCGGGGAGTCGGTCGCCCTTTCTTCATCGGCGTCACGCTCCTGGTCATGAGCTTGGGCCACGCCATCATCGCCTCCGGCATCCTGGCGTCGCTCTACGTCGGGTCGGTGCTCGTCGGTCTTTGCTATGGGTGT CAGTGGGCACTGATGCCGAGCATCACGTCGGAGATATTCGGGCTGAACCATTTCGGCACCATCTTCAACGTGGTGGCGGTGGCGAGCCCCGTGGGATCTTACATCCTCTCGGTGAGGGTGGTGGGTTACATCTACGACATGGAGTCGCCGCCGGGAGCTCGTGCCTGCTCCGGTAACCATTGCTTCGCTTTGTCGTTCGTCATCATGGCGTGTGTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTATAAA C GGGTTGTGTACGCCAGGTTGCAATCTTTTCTATAGAGAGAGAAACGAACCGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BI807180             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACGCTCNT GTCATGAGC TGGGCCACCCCATCAT  CCTCCGGCATCCT GCGTCGCTCTACGTC GGTCGGTGCTCGTC GTCTTTGCTAT GGTGTCCAGTGGGCCCTGAT CCGAGCATCACGTCGGAGATATTC GGCTGAACC TTTCGGCACCATCTTCAACGTGGT GC GT GCGAGCCCCGTGGGATCTTACATCCTCTCGGTGA GGT GTGGGTTACATCTACGACATGGAGTCGCCGCCGGGAGCTCGTGCCTGCTCCGGTAACCCTTGCTTCGTTTTGTCGTTCGTCATCATGGCGTGTGTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTATAAACC GGGTTGTGTACGCCAGGTTGCAATCTTTTCTATAGAGAGAGAAACGAACCGATTCTTTTCTAGC AATGCTTACCTATCTTTTACAAGCNACNNGGATTTGATCTGTACCTGTACGTCAGAGAATGGTAGAAAGCAGAGGCACACTACTTTCTGCTGCCATTTTTTTCTTGTTGAAAAGACATCATTGGACTGGTCACTGGTGTTATATACTACTAGTACTTGTAaaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                         ]




>consensus_12398#0
AGGGAGGCGAGTGGAGTGCGTGTCGACGTGTCCTACTCATCCACGCCACGTAACCAATTC
CATCTCCGGCCGCCGCCGATGGCCTCGCGCTCCCGGTGGTCGGCGCTGGCGGCGAGCGCG
CTCATCCAGTGCTTCGCGGGGAGCTCCTACTGCTTCGCCGTCTACTCCCCGGCGCTCAAG
GCCTCCCAGTCCTACGACCAGTCCGCCCTCGACAAGGTCGCCTTCTTCAAGGACGTCGGC
GCCAACGCCGGCATCCTCTCCGGCCTCCTCGCCGCATGGGCCCCCGCCGGCCGCCGCCGC
CCCTGGCTCGTCCTCCTCGCCGGCGCCGCCCTCTGCGCCGTCGGCTACCTCCCCATCTGG
CTCGCCGTCACGGGGGTCGCCCCGGCGCCGCTCCCTCTCCTCTGCCTCTACATGCTGCTC
GCCGCGCAGGCGCAGACCTTCCTCAACACCGCCGATGTCGTCACCGCCGTCGAGAATTTC
CCCGATCGACGAGGCACCGTCATCGGCATCATGAAGGGCTTTCTGGGATTAAGTGGAGCA
ATACTGGTCCAAGTATACCGCACCATCCACATTGCTCCCAGCACTTTCATACTGATGTTG
GCGATATTGCCCACTGCCATCACCCTGCTGCTTATGTATTTTGTCGATGTCCACCGTTCT
GATCATCAACGGTACAACAAGAAGTTCATGGATGCTTTCTCCCTCATTGCCATTACTGTT
GCTGGTTATCTAATGATCATCATAATCTGTGACCAAGTATTGAAGATAATAAGTTCAGCT
GTGCAGACTGTTTGCTTTGTGATACTCCTACTGTTGGTCCTGTCTCCAGTGGCTATTGCT
GTGAAGGCCCAGAAGACAGAATCAATGAAGCAAGAAGAAGAAACCAGGGATCAAGCTGAA
AGAATCGGACTACTCCAAGAGCAAATTAGTACAAATGCCAGCTCCAGTAGCGATGAGCGA
TGTCAAGAACTGTCGACAGGCAAAGAAAACATGAATCTGGTGCAGGCAATGTGCAAGCTG
AACTTCTGGCTGCTGTTCCTAGCAATGTCCTGTGGGATGGGATCAGGGCTTGCAACGGTG
AACAACATCAGCCAGATCGGCGGCTCCCTCGGGTACTCGACCAAGGAGACGAGCACACTG
GTGTCACTCTGGAGCATCTGGAACTTCTCAGGGAGGTTTGGTGCCGGCTACATATCCGAC
CACTTCCTCCGTTCGCGGGGAGTCGGTCGCCCTTTCTTCATCGGCGTCACGCTCCTGGTC
ATGAGCTTGGGCCACGCCATCATCGCCTCCGGCATCCTGGCGTCGCTCTACGTCGGGTCG
GTGCTCGTCGGTCTTTGCTATGGGTGTCAGTGGGCACTGATGCCGAGCATCACGTCGGAG
ATATTCGGGCTGAACCATTTCGGCACCATCTTCAACGTGGTGGCGGTGGCGAGCCCCGTG
GGATCTTACATCCTCTCGGTGAGGGTGGTGGGTTACATCTACGACATGGAGTCGCCGCCG
GGAGCTCGTGCCTGCTCCGGTAACCATTGCTTCGTTTTGTCGTTCGTCATCATGGCGTGT
GTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTAT
AAACGGGTTGTGTACGCCAGGTTGCAATCTTTTCTATAGAGAGAGAAACGAACCGATTCT
TTTCTAGCAAATGCTTACCTATCTTTTACAAGCAACAGGATTTGATCTGTACCTGTACGT
CAGAGAATGGTAGAAAGCAGAGGCACACTACTTTCTGCTGCCATTTTTTTCTTGTTGAAA
AGACATCATTGGACTGGTCACTGGTGTTATATACTACTAGTACTTGTATGTATGCGTAGA
AGTAAAAGGAAAATAAAACAATGTACAGGGAAGAAGCTACAGAAAACAAACAGCATTTGC
TTCGTCAGAAAATTATAGCAGAGCTGACTTAACACAAAGAAATCAGTTCGTGCAACCAGC
TGGCTGGGGTAATTTTTTCAAGGGAATAGGCTTGGAGAGCTCTGCCTTTTATGCTGATTC
AGAAAGTAGAGAATAGTTCAGTTCTAAGCACATGAAAGCTACATTGTTACAGAGTGGATT
TGTCAGCTGACAACTGTATATACCAGCTGCTTTGCCCCTCGCCGGATGCGGTACAGGAGG
AAAAGGCCCAGGCCACAGCGAGAGAAAAGGCCCAGCTACAAGTATGCAGGTCCAAAATGG
GCTCTGTAATATGGGCCAAGGCCGGGAAAGTGAATTCATCTAAATAGTCATGTCACCTA

consensusID : consensus_12398#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 364
fasta sequence

                              [CTCTGTGCACGGCTCCGGTAACCCTTGCTTCGCTTTGTCGTTCGTCATCATGGCGTGTGTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTAGTAAACGGGTTGTGTACGCCCACGGTTCAATCTTTTCTATAGAGAGAGAAACGAACCGAGTTCTTTTCTAGCATATGCTTACCTATCTTTTACAAGCCACAGGATTTGATCTGTACCTGTACGTCAGAGAATGGTAGAAAGCAGAGGCACACTACTTTCTGCT-CCATTTTTTTCTTGTTGAAAAGACATCATTGGACTGGTCACTGGTGTTATATACTACTAGTACTTGTATGTATGAAAAAAAAAA]

[+] EMBL BI813221             [CTCTGTGCACGGCTCCGGTAACCCTTGCTTCGCTTTGTCGTTCGTCATCATGGCGTGTGTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTAGTAAACGGGTTGTGTACGCCCACGGTTCAATCTTTTCTATAGAGAGAGAAACGAACCGAGTTCTTTTCTAGCATATGCTTACCTATCTTTTACAAGCCACAGGATTTGATCTGTACCTGTACGTCAGAGAATGGTAGAAAGCAGAGGCACACTACTTTCTGCT CCATTTTTTTCTTGTTGAAAAGACATCATTGGACTGGTCACTGGTGTTATATACTACTAGTACTTGTATGTATGAAAAAAAAAA]
[+] EMBL BI813256             [                                                                                                                                                                                                 GCTTACCTATCTTTTACAAGCAACAGGATTTGATCTGTACCTGTACGTCAGAGAATGGTAGAAAGCAGAGGCACACTACTTTCTGCTGCCATTTTTTTCTTGTTGAAAAGACATCATTGGACTGGTCACTGGTGTTATATACTACTAGTACTTGTATGTATGAAAAAAAAAA]




>consensus_12398#1
CTCTGTGCACGGCTCCGGTAACCCTTGCTTCGCTTTGTCGTTCGTCATCATGGCGTGTGT
CTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTAGTA
AACGGGTTGTGTACGCCCACGGTTCAATCTTTTCTATAGAGAGAGAAACGAACCGAGTTC
TTTTCTAGCATATGCTTACCTATCTTTTACAAGCCACAGGATTTGATCTGTACCTGTACG
TCAGAGAATGGTAGAAAGCAGAGGCACACTACTTTCTGCTCCATTTTTTTCTTGTTGAAA
AGACATCATTGGACTGGTCACTGGTGTTATATACTACTAGTACTTGTATGTATGAAAAAA
AAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12398#0      AGGGAGGCGAGTGGAGTGCGTGTCGACGTGTCCTACTCATCCACGCCACGTAACCAATTC 60
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      CATCTCCGGCCGCCGCCGATGGCCTCGCGCTCCCGGTGGTCGGCGCTGGCGGCGAGCGCG 120
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      CTCATCCAGTGCTTCGCGGGGAGCTCCTACTGCTTCGCCGTCTACTCCCCGGCGCTCAAG 180
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GCCTCCCAGTCCTACGACCAGTCCGCCCTCGACAAGGTCGCCTTCTTCAAGGACGTCGGC 240
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GCCAACGCCGGCATCCTCTCCGGCCTCCTCGCCGCATGGGCCCCCGCCGGCCGCCGCCGC 300
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      CCCTGGCTCGTCCTCCTCGCCGGCGCCGCCCTCTGCGCCGTCGGCTACCTCCCCATCTGG 360
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      CTCGCCGTCACGGGGGTCGCCCCGGCGCCGCTCCCTCTCCTCTGCCTCTACATGCTGCTC 420
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GCCGCGCAGGCGCAGACCTTCCTCAACACCGCCGATGTCGTCACCGCCGTCGAGAATTTC 480
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      CCCGATCGACGAGGCACCGTCATCGGCATCATGAAGGGCTTTCTGGGATTAAGTGGAGCA 540
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      ATACTGGTCCAAGTATACCGCACCATCCACATTGCTCCCAGCACTTTCATACTGATGTTG 600
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GCGATATTGCCCACTGCCATCACCCTGCTGCTTATGTATTTTGTCGATGTCCACCGTTCT 660
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GATCATCAACGGTACAACAAGAAGTTCATGGATGCTTTCTCCCTCATTGCCATTACTGTT 720
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GCTGGTTATCTAATGATCATCATAATCTGTGACCAAGTATTGAAGATAATAAGTTCAGCT 780
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GTGCAGACTGTTTGCTTTGTGATACTCCTACTGTTGGTCCTGTCTCCAGTGGCTATTGCT 840
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GTGAAGGCCCAGAAGACAGAATCAATGAAGCAAGAAGAAGAAACCAGGGATCAAGCTGAA 900
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      AGAATCGGACTACTCCAAGAGCAAATTAGTACAAATGCCAGCTCCAGTAGCGATGAGCGA 960
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      TGTCAAGAACTGTCGACAGGCAAAGAAAACATGAATCTGGTGCAGGCAATGTGCAAGCTG 1020
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      AACTTCTGGCTGCTGTTCCTAGCAATGTCCTGTGGGATGGGATCAGGGCTTGCAACGGTG 1080
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      AACAACATCAGCCAGATCGGCGGCTCCCTCGGGTACTCGACCAAGGAGACGAGCACACTG 1140
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GTGTCACTCTGGAGCATCTGGAACTTCTCAGGGAGGTTTGGTGCCGGCTACATATCCGAC 1200
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      CACTTCCTCCGTTCGCGGGGAGTCGGTCGCCCTTTCTTCATCGGCGTCACGCTCCTGGTC 1260
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      ATGAGCTTGGGCCACGCCATCATCGCCTCCGGCATCCTGGCGTCGCTCTACGTCGGGTCG 1320
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GTGCTCGTCGGTCTTTGCTATGGGTGTCAGTGGGCACTGATGCCGAGCATCACGTCGGAG 1380
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      ATATTCGGGCTGAACCATTTCGGCACCATCTTCAACGTGGTGGCGGTGGCGAGCCCCGTG 1440
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GGATCTTACATCCTCTCGGTGAGGGTGGTGGGTTACATCTACGACATGGAGTCGCCGCCG 1500
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GGAGCTCGTGC-CTGCTCCGGTAACCATTGCTTCGTTTTGTCGTTCGTCATCATGGCGTG 1559
consensus_12398#1      ---CTCTGTGCACGGCTCCGGTAACCCTTGCTTCGCTTTGTCGTTCGTCATCATGGCGTG 57
                              **** * ************ ******** ************************

consensus_12398#0      TGTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTA 1619
consensus_12398#1      TGTCTGCGTGGTTGGCTCTGCTGTCGCCTTCATGCTCTTCGTCAGGACGAGGAGGTTTTA 117
                       ************************************************************

consensus_12398#0      -TAAACGGGTTGTGTACGCC-AGGTTGCAATCTTTTCTATAGAGAGAGAAACGAACCGA- 1676
consensus_12398#1      GTAAACGGGTTGTGTACGCCCACGGTTCAATCTTTTCTATAGAGAGAGAAACGAACCGAG 177
                        ******************* * * * ******************************** 

consensus_12398#0      TTCTTTTCTAGCAAATGCTTACCTATCTTTTACAAGCAACAGGATTTGATCTGTACCTGT 1736
consensus_12398#1      TTCTTTTCTAGCATATGCTTACCTATCTTTTACAAGCCACAGGATTTGATCTGTACCTGT 237
                       ************* *********************** **********************

consensus_12398#0      ACGTCAGAGAATGGTAGAAAGCAGAGGCACACTACTTTCTGCTGCCATTTTTTTCTTGTT 1796
consensus_12398#1      ACGTCAGAGAATGGTAGAAAGCAGAGGCACACTACTTTCTGCT-CCATTTTTTTCTTGTT 296
                       ******************************************* ****************

consensus_12398#0      GAAAAGACATCATTGGACTGGTCACTGGTGTTATATACTACTAGTACTTGTATGTATGCG 1856
consensus_12398#1      GAAAAGACATCATTGGACTGGTCACTGGTGTTATATACTACTAGTACTTGTATGTATGAA 356
                       **********************************************************  

consensus_12398#0      TAGAAGTAAAAGGAAAATAAAACAATGTACAGGGAAGAAGCTACAGAAAACAAACAGCAT 1916
consensus_12398#1      AAAAAAAA---------------------------------------------------- 364
                        * **  *                                                    

consensus_12398#0      TTGCTTCGTCAGAAAATTATAGCAGAGCTGACTTAACACAAAGAAATCAGTTCGTGCAAC 1976
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      CAGCTGGCTGGGGTAATTTTTTCAAGGGAATAGGCTTGGAGAGCTCTGCCTTTTATGCTG 2036
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      ATTCAGAAAGTAGAGAATAGTTCAGTTCTAAGCACATGAAAGCTACATTGTTACAGAGTG 2096
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GATTTGTCAGCTGACAACTGTATATACCAGCTGCTTTGCCCCTCGCCGGATGCGGTACAG 2156
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      GAGGAAAAGGCCCAGGCCACAGCGAGAGAAAAGGCCCAGCTACAAGTATGCAGGTCCAAA 2216
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      ATGGGCTCTGTAATATGGGCCAAGGCCGGGAAAGTGAATTCATCTAAATAGTCATGTCAC 2276
consensus_12398#1      ------------------------------------------------------------
                                                                                   

consensus_12398#0      CTA 2279
consensus_12398#1      ---