These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1475 fasta sequence [GTCAAAAATCTCTTCCAATTTGAATATCTCTCCTCCCAAACGGTCGGCTCCGGAGCGGCGCCCGGACGAACACATGGCGGCGGCGATGGCGACGACGGCGGCGGCGGCGGCGGAAGAGGCGGTGGTGGCGCTCGACAAGGAGACTCTGATGCTGATGGGGTGCGGCGACGCCCCGCCGGCTGCGCCGTGCGCGGAGTGGGAGACGTTCAAGGAGAACGTGCGGCCGCTGAAGCGCGGCCGCAACGTGGGCCTCCTCAACCGCGCCCTCAAGGCGCACGCCGACCCCGCCCAGCGCGCCGCCCTCCTCGCCGCCCGGAGGAAAATGATCGAGGCAATCGACGAATACAGCGGCGAGGATCCGCTCCAACCATGGATAGACTGCATCAAATGGGTTCAGGAGTCGTTTCCGACAGGCGGGGATTGCTCCGGGTTGGTGGTGATCTACGAGCAGTGCGTGCGTGCCTTCTGGCACGACGACCGCTACAAGAACGATCTCCGCTACCTCAAAGTGTGGCTGGAATATGCGGGGAATTGTGCTGATTCCGAGGTGATATTCAGGTTCCTGGAGGCCAACCAGATTGGTCAGAGCCATACCAATTACTACTTGTCCTATGCGTCGGTAATGGAGTCCAAGAACAAGCTAAAGAAAGCTAATGAGATTTTTAACCTTGGTATTGCCAGGAAAGCAAAGCCTGTGGAGAAGTTGGAAACTACATACAGGGCATTTCTTCAGAGATCATCCAAAAAGAAGGCACATCCTGAGGATGACACAACTACTGATGATCATCCAGTACGCAACTTTGGGACTGTCTTGAACCGTGGTGAAATCAGAGGCCAGCATGCAGAAAACTCTCACCTGGTGAAAACTCTGCAAAGAGTTGATGTCAATAGGCCACTTGCAGTTTACACAGATGAGAATTCGTTACCTAGTCATGGCCTTGCTAGAACCAGGAGCAACAACACGGCCTGGCAGACCCTTGGATCACAAGCAGATCGGAACAAAGAAAATAACATGAGGCCTGCTAAATGGACATCACACAAGATTCCTCAGAAGGTTGGATCGAGGGCAGCAGTTCAGCCGACTCGTGTAAGCTCCATTGAAGTCTTCGTAGATGACGAATGCGCCGAGGAACCAGTTCCCCAAGTGCCAAAGAGTACAAAACCATCTATTCTGAAGCTTAGGCAAGCAACAAGCAGAAACCTCAAGCAGGAAACTGAACTGCTTATGGAGAATCCTCTGCGGAATTTCCCTCTAACCAGCCTTAGATAATCAATATTTATGTGGTGTAATGCTGTATTTCGATCTTCTTTTACCAATTTATTGTTTGAGTGTTTGTGACATTATGCTGAAATAAGCTTTAGCCTCTAAAGCTTAGGCAGGCAAAGAGCCTTTTTAGGCTATCCATGAGTGTTGTAATATTGCACAATAATTTGATTGATAAATCCTCGACGAGGGTTGGGGGTGCTTAATTTGG] [+] EMBL AK060499 [GTCAAAAATCTCTTCCAATTTGAATATCTCTCCTCCCAAACGGTCGGCTCCGGAGCGGCGCCCGGACGAACACATGGCGGCGGCGATGGCGACGACGGCGGCGGCGGCGGCGGAAGAGGCGGTGGTGGCGCTCGACAAGGAGACTCTGATGCTGATGGGGTGCGGCGACGCCCCGCCGGCTGCGCCGTGCGCGGAGTGGGAGACGTTCAAGGAGAACGTGCGGCCGCTGAAGCGCGGCCGCAACGTGGGCCTCCTCAACCGCGCCCTCAAGGCGCACGCCGACCCCGCCCAGCGCGCCGCCCTCCTCGCCGCCCGGAGGAAAATGATCGAGGCAATCGACGAATACAGCGGCGAGGATCCGCTCCAACCATGGATAGACTGCATCAAATGGGTTCAGGAGTCGTTTCCGACAGGCGGGGATTGCTCCGGGTTGGTGGTGATCTACGAGCAGTGCGTGCGTGCCTTCTGGCACGACGACCGCTACAAGAACGATCTCCGCTACCTCAAAGTGTGGCTGGAATATGCGGGGAATTGTGCTGATTCCGAGGTGATATTCAGGTTCCTGGAGGCCAACCAGATTGGTCAGAGCCATACCAATTACTACTTGTCCTATGCGTCGGTAATGGAGTCCAAGAACAAGCTAAAGAAAGCTAATGAGATTTTTAACCTTGGTATTGCCAGGAAAGCAAAGCCTGTGGAGAAGTTGGAAACTACATACAGGGCATTTCTTCAGAGATCATCCAAAAAGAAGGCACATCCTGAGGATGACACAACTACTGATGATCATCCAGTACGCAACTTTGGGACTGTCTTGAACCGTGGTGAAATCAGAGGCCAGCATGCAGAAAACTCTCACCTGGTGAAAACTCTGCAAAGAGTTGATGTCAATAGGCCACTTGCAGTTTACACAGATGAGAATTCGTTACCTAGTCATGGCCTTGCTAGAACCAGGAGCAACAACACGGCCTGGCAGACCCTTGGATCACAAGCAGATCGGAACAAAGAAAATAACATGAGGCCTGCTAAATGGACATCACACAAGATTCCTCAGAAGGTTGGATCGAGGGCAGCAGTTCAGCCGACTCGTGTAAGCTCCATTGAAGTCTTCGTAGATGACGAATGCGCCGAGGAACCAGTTCCCCAAGTGCCAAAGAGTACAAAACCATCTATTCTGAAGCTTAGGCAAGCAACAAGCAGAAACCTCAAGCAGGAAACTGAACTGCTTATGGAGAATCCTCTGCGGAATTTCCCTCTAACCAGCCTTAGATAATCAATATTTATGTGGTGTAATGCTGTATTTCGATCTTCTTTTACCAATTTATTGTTTGAGTGTTTGTGACATTATGCTGAAATAAGCTTTAGCCTCTAAAGCTTAGGCAGGCAAAGAGCCTTTTTAGGCTATCCATGAGTGTTGTAATATTGCACAATAATTTGATTGATAAATCCTCGACGAGGGTTGGGGGTGCTTAATTTGG] consensusID : consensus_1240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1234 fasta sequence [GAGCCCCCTCTTCGCCATTTCGCCTGCTCCGTGATCGCCGTCGCGCACCATTTCGCCGCCCTGCCCCGCCCCAGCAACGATTGCGTGCGGGATCTCAAACCCTAGGGTTCCCTCGGCGCTGACGGGAGCAACCTCTCGCCGCCGACGCCGCTATCGCCCGGCAGATTCGTTGACGATGGGGCGCTCACGGCCCTCGCCTCCGCCTCCTCACGCGAGCGAGGCCAGAGACATTGACAGCAAGAGTATTGGCCCCAGCAGTAATGGCTCTGATGATGAGAAAGTGAACTGGAAGGCTCTAAAAGATGTCACATACAAAGAGTGTTTTATTCATTCTGGTTTGAAGATCTTATCCATTCTCTCTGATATCCGTCTGCATCCCCACGAGCGGTGGAATATTTGTCAGAAGGTAGGATCGAGGGCTGCAATTCTGCAAAATCTTGTCAACCCCATTGAGGTGTTCGTAGATGATGAATGTGCTGGGAAACCAGCTCCCCAAGTGCCAAAGAGTTCAAAACCATCTATTATGAAGCTTAGGCAAGCAACAAGCAGAAACCTCAAGCGGGAAATTGAACTGCTTATGGAGAACCCACAGCGCAACTTCCCTCTAACCAACTTCTGTCTTGACCCCTCAAAGTTGATTAAATCTAGCACTATGGTTTCCCCTGTCATTTATGCGCAACGTCGCCTGTCATATCTGATGAATGGCATGGGAAGACAACAAGCTCTCGGTGATGCAATGCAAGCTTGGAGACGGCCAACCACTTTTAATTTTCTGGATGCTGCTCTGCCTTCTTTAGGCATGGAAATTGAATCTGAAGAAGCAATCGAGGGTGCATCAAATTTTCAGCTTGAGCTAAAGAGAAGGGGGATGTTCTCCAGCGCTCTCCTCTACGCAAGAAGGAGATTGCCCTCCGAGTCCCAATTGCCTTGTTCATCACCATCACTTATGCACCAAGCAAGCGTACGCAACAAAGGCTGTTTGTTTTCAGGCAGCGCTCTTCAAAAGAATTTCCATTTATGGATTGCACGAGGTCTCAGGTTGCTACGCTGATCTGACTGCGCGATAACTTTCATATGCCGGGAATTCATGCTTAAATAGCCAATTAAGCCTGATCAGAATGTAACAAAATTCTTGTGGCAAGTTGACAACTTGCTATCCTGCTGAACAAATATTATCCTCAGTATTGTCGTCCTGACTTGTGGGTGAATTCGAGAGCATTGATATGATGGAGGT] [+] EMBL AK073191 [GAGCCCCCTCTTCGCCATTTCGCCTGCTCCGTGATCGCCGTCGCGCACCATTTCGCCGCCCTGCCCCGCCCCAGCAACGATTGCGTGCGGGATCTCAAACCCTAGGGTTCCCTCGGCGCTGACGGGAGCAACCTCTCGCCGCCGACGCCGCTATCGCCCGGCAGATTCGTTGACGATGGGGCGCTCACGGCCCTCGCCTCCGCCTCCTCACGCGAGCGAGGCCAGAGACATTGACAGCAAGAGTATTGGCCCCAGCAGTAATGGCTCTGATGATGAGAAAGTGAACTGGAAGGCTCTAAAAGATGTCACATACAAAGAGTGTTTTATTCATTCTGGTTTGAAGATCTTATCCATTCTCTCTGATATCCGTCTGCATCCCCACGAGCGGTGGAATATTTGTCAGAAGGTAGGATCGAGGGCTGCAATTCTGCAAAATCTTGTCAACCCCATTGAGGTGTTCGTAGATGATGAATGTGCTGGGAAACCAGCTCCCCAAGTGCCAAAGAGTTCAAAACCATCTATTATGAAGCTTAGGCAAGCAACAAGCAGAAACCTCAAGCGGGAAATTGAACTGCTTATGGAGAACCCACAGCGCAACTTCCCTCTAACCAACTTCTGTCTTGACCCCTCAAAGTTGATTAAATCTAGCACTATGGTTTCCCCTGTCATTTATGCGCAACGTCGCCTGTCATATCTGATGAATGGCATGGGAAGACAACAAGCTCTCGGTGATGCAATGCAAGCTTGGAGACGGCCAACCACTTTTAATTTTCTGGATGCTGCTCTGCCTTCTTTAGGCATGGAAATTGAATCTGAAGAAGCAATCGAGGGTGCATCAAATTTTCAGCTTGAGCTAAAGAGAAGGGGGATGTTCTCCAGCGCTCTCCTCTACGCAAGAAGGAGATTGCCCTCCGAGTCCCAATTGCCTTGTTCATCACCATCACTTATGCACCAAGCAAGCGTACGCAACAAAGGCTGTTTGTTTTCAGGCAGCGCTCTTCAAAAGAATTTCCATTTATGGATTGCACGAGGTCTCAGGTTGCTACGCTGATCTGACTGCGCGATAACTTTCATATGCCGGGAATTCATGCTTAAATAGCCAATTAAGCCTGATCAGAATGTAACAAAATTCTTGTGGCAAGTTGACAACTTGCTATCCTGCTGAACAAATATTATCCTCAGTATTGTCGTCCTGACTTGTGGGTGAATTCGAGAGCATTGATATGATGGAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1240#0 GTCAAAAATCTCTTCCAATTTGAATATCTCTCCTCCCAAACGGTCGGCTCCGGAGCGGCG 60 consensus_1240#1 ---------------------GAGCCCCCTCTTCGCCATTTCGCCTGCTCCGTGATCGCC 39 ** * *** * * ****** ** consensus_1240#0 CCCGGACGAACACATGGCGGCGGCGATGGCGACGACGGCGGCGGCGGCGGCGGAAGAGGC 120 consensus_1240#1 GTCGCGC-ACCATTTCGCCGCCCTGCC-----CCGCCCCAGCAACGATTGCGT-----GC 88 ** * * ** * ** ** * * * * ** ** *** ** consensus_1240#0 GGTGGTGGCGCTCGACAAGGAGACTCTGATGCTGATGGGGTGCGGCGACGCCCCGCCGGC 180 consensus_1240#1 GG-GATCTCAAACCCTAGGGTTCCCTCGGCGCTGACGGGA----GCAACCTCTCGCCGCC 143 ** * * * * * ** * * ***** *** ** ** * ***** * consensus_1240#0 TGCGCCGTGCGCGGAGTGGGAGACGTTCAAGGAGAACGTGCGGCCGCTGAAGCGCGGCCG 240 consensus_1240#1 GACGCCGC-TATCGCCCGGCAGA--TTCGTTGACGATG---GGGCGCT----CACGGCCC 193 ***** * ** *** *** ** * * ** **** * ***** consensus_1240#0 CAACGTGGGCCTCCTCAACCGCGCCCTCAAGGCGCACGCCGACCCCGCCCAGCGCGCCGC 300 consensus_1240#1 TCGCCTCCGCCTCCTCACGCGAGC----GAGGCCAGAGACATTGACAGCAAGAGTATTGG 249 * * ********* ** ** **** * * * * ** * * consensus_1240#0 CCTCCTCGCCGCCCGGAGGAAAATGATCGAGGCAATCGACGAATACAGCGGCGAGGATCC 360 consensus_1240#1 CCCCA--GCAGTAATGGCTCTGATGAT-GAGAAAGTGAACTGGAAGGCTCTAAAAGAT-- 304 ** * ** * * ***** *** * * ** * * *** consensus_1240#0 GCTCCAACCATGGATAGACTGCATCAAATGGGTTCAGGAGTCGTTTCCGA-CAGGCGGGG 419 consensus_1240#1 GTCACATACAAAGAGTGTTTTATTCATTCTGGTTTGAAGATCTTATCCATTCTCTCTGAT 364 * ** ** ** * * *** **** ** * *** * * * consensus_1240#0 ATTGCTCCGGGTTGGTGGTGATCTACGAGCAGTGCG-TGCGTGCCTTCTGGCACGA-CGA 477 consensus_1240#1 ATCCGTCTGCATC--------CCCACGAGCGGTGGAATATTTGTCAGAAGGTAGGATCGA 416 ** ** * * * ****** *** * ** * ** * ** *** consensus_1240#0 CCGCTACAAGAACGATCTCCGCTACCTCAA-AGTGTGGCTGGAATATGCGGGGAATTGTG 536 consensus_1240#1 GGGCTGCAAT-----TCTGCAAAATCTTGTCAACCCCATTGAGGTGTTCGTAGA----TG 467 *** *** *** * * ** * ** * * ** ** ** consensus_1240#0 CTGATTCCGAGGTGATATTCAGGTTCCTGGAGGCCAACCAGATTGGTCAGAGCCATACCA 596 consensus_1240#1 ATGAATGTGCTGGGA-AACCAGCTCCCCAAGTGCCAA--AGAGT--TCAAAACCAT---- 518 *** * * * ** * *** * ** ***** *** * *** * **** consensus_1240#0 ATTACTACTTGTCCTATGCGTCGGTAATGGAGTCCAAGAACAAGCTAAAGAAAGCTAATG 656 consensus_1240#1 -CTATTATGAAGCTTAGGCA---------------AGCAACAAGC-AGAAACCTCAAGCG 561 ** ** * ** ** * ******* * * * * * * consensus_1240#0 AGATTTTTAACCTTGGTATTGCCAGGAAAGCAAAGCCTGTGGAGAAGTTGGAAACTACAT 716 consensus_1240#1 GGAAATTGAACTGC----TTATGGAGAACCCACAGC-------------GCAACTTCCCT 604 ** ** *** ** *** ** *** * ** * * * consensus_1240#0 ACAGGGCATTTCTTCAGAGATCATCCAAAAAGAAGGCACATCCTGAGGATGACACAACTA 776 consensus_1240#1 CTAACCAACTTCTGTCTTGACCCCTCAAAGTTGAT-TAAATCTAG----CACTATGGTTT 659 * * **** ** * **** * * *** * * * consensus_1240#0 CTGATGATCATCCAGTACGCAACTTTGGGACTGTCTTGAACCGTGGTGAAATCAGAGGCC 836 consensus_1240#1 CCCCTG-TCATTTA-TGCGCAACGTCGC--CTGTCATA---TCTGATGAA---TGGCATG 709 * ** **** * * ****** * * ***** * ** **** * consensus_1240#0 AGCATGCAGAAAACTCTCACCTGGTGAAAACTCTGCAAAGAGTTGATGTCAATAGGCCAC 896 consensus_1240#1 GGAAGACAACAAGCTCTCGG-TGATGCAA----TGCAAG--CTTGGAGACGGCCAACCAC 762 * * ** ** ***** ** ** ** ***** *** * * **** consensus_1240#0 TTGCAGTTTACACAGATGAGAATTCG--TTACCTAGTCATGGCCTTGCTAGAACCAGGAG 954 consensus_1240#1 TTTTAATTTTC-TGGATGCTGCTCTGCCTTCTTTAGGCATGGA---AATTGAATCTGAAG 818 ** * *** * **** * * ** *** ***** * *** * * ** consensus_1240#0 CAACAACACGGCCTGGCAGACCCTTGGATCACAAGCAGATCGGAACAAAGAAAATAACAT 1014 consensus_1240#1 AAGCAATCGAGGGTGCATCAAATTTTCAGCTTGAGCTAAAGAGAAGGGGGATGTTCTCCA 878 * *** * ** * ** * * *** * *** ** * * consensus_1240#0 GAGGCCTGCTAAATGGACATCACACAAGATTCCTCAGAAGGTTGGATCGAGGGCAGCAGT 1074 consensus_1240#1 GCGCTCTCCTCTACGCAA---GAAGGAGATTGCCCTCCGAGTC---CCAATTGCCTT-GT 931 * * ** ** * * * * ***** * * ** * * ** ** consensus_1240#0 TCAGCCGACTCGTGTAAGCTCCATTGAAGTCTTCGTAGATGACGAATGCGCCGAGGAACC 1134 consensus_1240#1 TCATCACCATCACTTATGCACCAAGCAAG----CGTACGCAACAAAGGCTGTTTGTTTTC 987 *** * ** ** ** *** *** **** ** ** ** * * consensus_1240#0 AGTTCCCCAAGTGCCAAAGAGTACAAAACCATCTATTCT--GAAGCTTAGGCAAGCAACA 1192 consensus_1240#1 AGGCAGCGCTCTTCAAAAGAATTTCCATTTATGGATTGCACGAGGTCTCAGGTTGCTAC- 1046 ** * * * ***** * * ** *** ** * * * ** ** consensus_1240#0 AGCAGAAACCTCAAGCAGGAAACTGAACTGCTTATG--GAGAATCCTCTGCGGAATTTCC 1250 consensus_1240#1 -GCTGA----TCTGACTGCGCGATAACTTTCATATGCCGGGAATTCATGCTTAAATAGCC 1101 ** ** ** * * * * * * **** * **** * *** ** consensus_1240#0 CTCTAACCAGCCTTAGATAAT--CAATATTTATGTGGTGTAATGCTGTATTTCGATCTTC 1308 consensus_1240#1 AATTAAGCCTGATCAGAATGTAACAAAATTCTTGTGGCAAGTTGACAACTTGCTATCCTG 1161 *** * * *** * *** *** ***** ** ** * *** * consensus_1240#0 TTTTACCAATTTATTGTTTGAGTGTTTGTGACATTATGCTGAAATAAGCTTTAGCCTCTA 1368 consensus_1240#1 CTGAACAAATAT-TATCCTCAGTATTGTCGTCCTGACTTGTGGGTGAATTCGAGAGCATT 1220 * ** *** * * * *** ** * * * * * * * ** * consensus_1240#0 AAGCTTAGGCAGGCAAAGAGCCTTTTTAGGCTATCCATGAGTGTTGTAATATTGCACAAT 1428 consensus_1240#1 GATATGATGGAGGT---------------------------------------------- 1234 * * * * *** consensus_1240#0 AATTTGATTGATAAATCCTCGACGAGGGTTGGGGGTGCTTAATTTGG 1475 consensus_1240#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||