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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1088 fasta sequence
[ACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTGTGAAAGAATTGAATTGGGATTGCCGTTTCTGGATAAAAGTGTATAGGTGCAGCTATCTAATCATAAACCCACGTAAAAACATCGGCTTAAAAACAAACCTTTTGCTCAGGCCGGGTGATTCAAGCTCAAAAACACAAGCTGTTTGTTACAAGAAGGCGCAACGAGCAACCGAGTTGCAAACCTGACCCTACCCCACGACCGGCGCCACCAGGTGCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATGGTGACTGATGAGCAGTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCAACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTCCAACTTCAGCGATCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAGATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAGTGGCTCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAGCTGGAAACATCATTTGTGTAGGCCAAGACTTCAACATTTTCAGCAGCAAGGTCATGTCAGCATCTGCAAGCTTACTTGTATGATAAAATGATGTTTCTTTCAATACTTTTGATATGTTTCACTCCTTCAGTCCATGTGCAGTGTC]
[+] EMBL CF321849 [ACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTGAAGGAATTGAATTGGGATTGCCGTTTCTGGATAAAAGTGTATAGGTGCAGCTATCTAATCATAAACCCACGTAAAAACATCGGCTTAAAAACAAACCTTTTGCTCAGGCCGGGTGATTCAAGCTCAAAAACACAAGCTGTTTGTTTCAAGAAGGCGCAACGAGCAACCGAGTTGCAAACCTGACCCTACCCCACGACCGGCGCCACCAGGTGCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATGGTGACTGATGAGCAGTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCAACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTCCAACTTCAGCGGTCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAGATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGG ]
[-] EMBL AU173301 [ TTTTGTGAAAGAATTGAATTGGGATTGCCGTTTCTGGATAAAAGTGTATAGGTGCAGCTATCTAATCATAAACCCACGTAAAAACATCGGCTTAAAAACAAACCTTTTGCTCAGGCCGGGTGATTCAAGCTCAAAAACACAAGCTGTTTGTTACAAGAAGGCGCAACGAGCAACCGAGTTGCAAACCTGACCCTACCCCACGACCGGCGCCACCAGGTGCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATGGTGACTGATGAGCAGTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCAACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTCCAACTTCAGCGATCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAA ]
[-] EMBL AU173200 [ TTTTGTGAAAGAATTGAATTGGGATTGCCGTTTCTGGATAAAAGTGTATAGGTGCAGCTATCTAATCATAAACCCACGTAAAAACATCGGCTTAAAAACAAACCTTTTGCTCAGGCCGGGTGATTCAAGCTCAAAAACACAAGCTGTTTGTTACAAGAAGGCGCAACGAGCAACCGAGTTGCAAACCTGACCCTACCCCACGACCGGCGCCACCAGGTGCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATGGTGACTGATGAGCAGTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCAACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTNCAACTTCAACGATCTTCGAGTCCTTTGAAGCTCTTGCGGGGGTCGCAACACT ]
[+] EMBL CB679601 [ GAAAGAATTGAATTGGGATTGCCGTTTCTGGACAAAAGTGTATAGGTGCAGCTATCTAATCATAAACCCACGTAAAAACATCGGCTTAAAAACAAACCTTTTGCTCAGGCCGGGTGATTCAAGCTCAAAAACACAAGCTGTTTGTTACAAGAAGGCGCAACGAGCAACCGAGTTGCAAACCTGACCCTACCCCACGACCGGCGCCACCAGGTGCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATGGTGACTGATGAGCAGTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCAACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTCCAACTTCAGCGATCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAGATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACANGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATT ]
[-] EMBL CB679600 [ GCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATGGTGACTGATGAGCAGTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCAACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTCCAACTTCAGCGATCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAGATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAGTGGCTCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAGCT ]
[-] EMBL CA999678 [ ATCATCTTGTCAGAAGCTCGATGTCGGCTCCAACTTCAGCGATCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAGATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGG ]
[-] EMBL AU173199 [ TGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAGATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAG ]
[-] EMBL CF321848 [ ATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAAAAAATCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAACTGGAAACATCATTTGTGTAGGCCAAGACTTCAACATTTTCAGCAGCAAGGTCATGTCAGCATCTGCAAGCTTACTTGTATGATAAAATGATGTTTCTTTCAATACTTTTGATATGTTTCACTCCTTCAGTCCATGTGCAGTGTC]
[-] EMBL OSR20702A [ TTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGC ]
consensusID : consensus_12409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 976 fasta sequence
[CCGGGGAGGATACATAAAGCTCCTGCGATGCGGCCAGGTATAAAACAGATATACAATTGCCTCAAAAGGGGAGGACTAAACGGTTGGAGTTTGGCCATTTATATCTGCAAAGTGAGGTGGCCCACTTCACGATTTTAGTCTTTAAGTCTTCGGGTTCGCACACTTTAACATCAGATCAAGAGCAATGGCTTTCACAAGGCCATTCAACATGAGAGACCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCGTCTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCTTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAGTGGCTCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAACTGGAAACATCATTTGTGTAGGCCAAGACTTCAACATTTTCAGCAGCAAGGTCATGTCAGCATCTGCAAGCTTACTTGTATGATAAAATGATGTTTCTTTCAATACTTTTGCTATGGCAGCTAATCTGGACAACTCGATCTCAGACAAAGATAGTTCCTTCTGTTCCAAATTAGATGAAAGTGTTGCATTGAATTCAGAGAGTTTCTTTAGAATTCCCTCAAACTGAGCCGTCTCAAATGTCAGCATTCCATTCTTTGGTATGTGCTTGAAAGTTGGTTTAGGAGCACTAACAGTTGAAGACGCTGATTGCCCAGGTACATATGCATTAGCTCCAGTGT]
[-] EMBL BE039650 [CCGGGGAGGATACATAAAGCTCCTGCGATGCGGCCAGGTATAAAACAGATATACAATTGCCTCAAAAGGGGAGGACTAAACGGTTGGAGTTTGGCCATTTATATCTGCAAAGTGAGGTGGCCCACTTCACGATTTTAGTCTTTAAGTCTTCGGGTTCGCACACTTTAACATCAGATCAAGAGCAATGGCTTTCACAAGGCCATTCAACATGAGAGACCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCGTCTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCTTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAGTGGCTCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAACTGGAAACATCATTTGTGTAGGCCAAGACTTCAACATTTTCAGCAGCAAGGTCATGTCAGCATCTGCAAGCTTACTTGTATGATAAAATGATGTTTCTTTCAATACTTTTGCTATGGCAGCTAATCTGGACAACTCGATCTCAGACAAAGATAGTTCCTTCTGTTCCAAATTAGATGAAAGTGTTGCATTGAATTCAGAGAGTTTCTTTAGAATTCCCTCAAACTGAGCCGTCTCAAATGTCAGCATTCCATTCTTTGGTATGTGCTTGAAAGTTGGTTTAGGAGCACTAACAGTTGAAGACGCTGATTGCCCAGGTACATATGCATTAGCTCCAGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12409#0 ACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTGTGAAAGAATTGAATTGGGATTG 60
consensus_12409#1 ------------------------------------------------------------
consensus_12409#0 CCGTTTCTGGATAAAAGTGTATAGGTGCAGCTATCTAATCATAAACCCACGTAAAAACAT 120
consensus_12409#1 ------------------------------------------------------------
consensus_12409#0 CGGCTTAAAAACAAACCTTTTGCTCAGGCCGGGTGATTCAAGCTCAAAAACACAAGCTGT 180
consensus_12409#1 ------------------------------------------------------------
consensus_12409#0 TTGTTACAAGAAGGCGCAACGAGCAACCGAGTTGCAAACCTGACCCTACCCCACGACCGG 240
consensus_12409#1 ------------------------------------------------------------
consensus_12409#0 CGCCACCAGGTGCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATG 300
consensus_12409#1 ---------------------------------CCGGGGAGGATACATAAAGCTCCTGCG 27
** * * * * * * *
consensus_12409#0 GTGACTGATGAGCA-GTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCA 359
consensus_12409#1 ATG-CGGCCAGGTATAAAACAGATATACAATTGCCTC----AAAAGGGGAGG----ACTA 78
** * * * * * ** * * * ***** ** ***** * ** *
consensus_12409#0 ACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTCCAAC 419
consensus_12409#1 AACGGTTG-GAGTTT--GGCCATTT-------ATATCTGCAAAGTGAGGTGG---CCCAC 125
* ** ** **** * ****** * * ** * * ** ** * ** **
consensus_12409#0 TTCAGCGATCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAG 479
consensus_12409#1 TTCA-CGATTTT--AGTCTTT--AAGTCTTCG---GGTTCGCA-CACT-TTAACATCA-G 174
**** **** ** **** ** *** * * ******* **** ********* *
consensus_12409#0 ATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGC 539
consensus_12409#1 ATCAAGAGCAATGGCTTTCACAAGGCCATTCAACATGAGAGA-CCGATTGCAACAAGGGC 233
************** ************************** *****************
consensus_12409#0 CCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAG 599
consensus_12409#1 CCGGTATTTCGAATCAGCGTCTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAG 293
****************** ****************************************
consensus_12409#0 TATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAG 659
consensus_12409#1 TATCTGTGCTTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAG 353
********* **************************************************
consensus_12409#0 AAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGA 719
consensus_12409#1 AAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGA 413
************************************************************
consensus_12409#0 ATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAA 779
consensus_12409#1 ATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAA 473
************************************************************
consensus_12409#0 GTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAAC 839
consensus_12409#1 GTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAAC 533
************************************************************
consensus_12409#0 CTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAGT 899
consensus_12409#1 CTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAGT 593
************************************************************
consensus_12409#0 GGCTCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAGCTGGAAACATCATTTG 959
consensus_12409#1 GGCTCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAACTGGAAACATCATTTG 653
******************************************* ****************
consensus_12409#0 TGTAGGCCAAGACTTCAACATTTTCAGCAGCAAGGTCATGTCAGCATCTGCAAGCTTACT 1019
consensus_12409#1 TGTAGGCCAAGACTTCAACATTTTCAGCAGCAAGGTCATGTCAGCATCTGCAAGCTTACT 713
************************************************************
consensus_12409#0 TGTATGATAAAATGATGTTTCTTTCAATACTTTTGATATGTT---TCACTCCTTCAGTCC 1076
consensus_12409#1 TGTATGATAAAATGATGTTTCTTTCAATACTTTTGCTATGGCAGCTAATCTGGACAACTC 773
*********************************** **** * * ** *
consensus_12409#0 ATGTGCAGTGTC------------------------------------------------ 1088
consensus_12409#1 GATCTCAGACAAAGATAGTTCCTTCTGTTCCAAATTAGATGAAAGTGTTGCATTGAATTC 833
***
consensus_12409#0 ------------------------------------------------------------
consensus_12409#1 AGAGAGTTTCTTTAGAATTCCCTCAAACTGAGCCGTCTCAAATGTCAGCATTCCATTCTT 893
consensus_12409#0 ------------------------------------------------------------
consensus_12409#1 TGGTATGTGCTTGAAAGTTGGTTTAGGAGCACTAACAGTTGAAGACGCTGATTGCCCAGG 953
consensus_12409#0 -----------------------
consensus_12409#1 TACATATGCATTAGCTCCAGTGT 976
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||