cluster # 12412

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Oryza sativa
cluster # 12412 cluster # 12412 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12412#0 length = 1993 sequences # 7
consensus_12412#1 length = 831 sequences # 1

consensus_12412#2 length = 797 sequences # 1
consensus_12412#3 length = 294 sequences # 1

consensusID : consensus_12412#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1993
fasta sequence

                              [CCCCTGAGCATAACTGAAGCAAAGACCTCCCCCACGCGACGCGAGACGCGACCCATCATTCGGAGGCCCACCAATTCATCTGGAGAAAGCTGCGCTCCTCCGCCTCGCCGCCGCCGCCGCCGGGGAGGATGGCCGAACGGCGGTACACCGAGCAGGAGGAGGCGCTCGAGATCAGCTCACTCCGCCGCATCATCGCCGCCTACGCCAACTACCACGATGCTGCAGAAAGGGATGTCAAGAGATATGAGCGATCATTCAAAAGGCTTCCTCCTGCCCACAAGGAACTTCTTTTTAACCTTGGTCTGAAGTACCAAAGGCTGAGATGGTGTATATCCATGAATGCATCATTCATCATGGACATGCTTGAGGCATTTGAGCCTCCTTTCGACATGAGTCAGCATGTAGATATGGATGGTCATGATTGCGCAGAGAACATGCATGGACATTGTCATGCAGATTGTGCTCATTCTGTCGATAGGGGTGATTGCTTTAGAAGTTCTATCTCTGTAAGCAATTCCGAGTTGCATGAACCAGACGGTTGCCCCAGGAAAGACGACAAGACTCATGAACTCTCAAGAGAAACTGACAACAAGGACGAGGTAGTTGACATGGAAAGTTGCTCCCGGCCGGTTGGTGACAAATTGGGGGCATCTCAGGTTGAAGATAAATCATGTAATGGTGATAAAGCCATGGATGCAGCAGCTAACTGTCAAGATACAGATTGTGTTGCATGTTCTGCTGATGAGAATGTGATACCGCAGCAATTCATGGCTCCATCCTTGCAGTTGAATGTTCCTCCAATTGATGTTGACAAGGTTAGATGCATCATAAGAAATATTGTCAGGGATTGGGCTCAGGAGGGTCAAAAGGAACGTGATGAGTGCTATAAGCCCATCCTGGAGGAGCTTAATCGTCTATTTCCTAACCGAAGCAAGGAGAGGCCTCCTTCATGCTTAGTTCCTGGTGCTGGGCTTGGGAGATTGGCTCTGGAGATATCCACTCTGGGTTTTGTGAGCCAGGGAAACGAGTTCTCGTATTACATGATGATTTGTTCAAGTTTCATTCTAAACCACACGCAAGAAACCAATGAGTGGACTATATATCCTTGGATACACAGCAACTGCAATTCTCTTTCAGACAATGATCAACTTCGCCCTGTTTCATTTCCTGATATTCACCCCTCAAGCTCAGGGATCACAGAAGGATTTTCTATGTGTGCTGGTGATTTTGTAGAGGTCTACAATGAAGAAAGCCAAGAATCTTCATGGGATGCTGTTGTAACATGCTTCTTCTTGGATACGGCACACAATATCGTTGAATATATAGAGATCATATCAAAAGTTCTCAAGGATGGTGGGGTCTGGATAAATTTGGGTCCGCTTCTGTATCACTTCGCTGACTCCTATGGACCAGATGATGATATGTCTATTG-AACTGAGTTTGGAAGATGTG-AAAAGAGTTGCTTACCATTATGGA-TTTGTGATGGAGGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAAAAGCTCAAAA-ACACCA-GTGAGGTGGAGATACTCTGTTTGGAACGGTTGGCACAGGCTTA-CTGGCTATAGATCAAATTTCAGTCATTCTATGGT-GATGCCTATCA-GATTTGGAGACGGACAATACGGATGATCCAATTCACGCCACCATTTTTCA-CCA-TGATATGAAACTATATGGATAGATTGATAGTGCATGCGTTCCATTACTGCGATAAAACCAATCTCCGTCTGCCAAAACATTTGAATGGCACAGGGAAAAACTGTTCCA-GTTCGATGTATATCAATTGGCCAATGGGAGCA-CTAAGGTATATTAATAAGTTCGATGGTACGTGTTCGAACTGTACAATGACACTGAATTAGTAA-ACGGCAAATCAAAGAGCTCAACTTTTTTGGACTGTAAAAA]

[+] EMBL AK070791             [CCCCTGAGCATAACTGAAGCAAAGACCTCCCCCACGCGACGCGAGACGCGACCCATCATTCGGAGGCCCACCAATTCATCTGGAGAAAGCTGCGCTCCTCCGCCTCGCCGCCGCCGCCGCCGGGGAGGATGGCCGAACGGCGGTACACCGAGCAGGAGGAGGCGCTCGAGATCAGCTCACTCCGCCGCATCATCGCCGCCTACGCCAACTACCACGATGCTGCAGAAAGGGATGTCAAGAGATATGAGCGATCATTCAAAAGGCTTCCTCCTGCCCACAAGGAACTTCTTTTTAACCTTGGTCTGAAGTACCAAAGGCTGAGATGGTGTATATCCATGAATGCATCATTCATCATGGACATGCTTGAGGCATTTGAGCCTCCTTTCGACATGAGTCAGCATGTAGATATGGATGGTCATGATTGCGCAGAGAACATGCATGGACATTGTCATGCAGATTGTGCTCATTCTGTCGATAGGGGTGATTGCTTTAGAAGTTCTATCTCTGTAAGCAATTCCGAGTTGCATGAACCAGACGGTTGCCCCAGGAAAGACGACAAGACTCATGAACTCTCAAGAGAAACTGACAACAAGGACGAGGTAGTTGACATGGAAAGTTGCTCCCGGCCGGTTGGTGACAAATTGGGGGCATCTCAGGTTGAAGATAAATCATGTAATGGTGATAAAGCCATGGATGCAGCAGCTAACTGTCAAGATACAGATTGTGTTGCATGTTCTGCTGATGAGAATGTGATACCGCAGCAATTCATGGCTCCATCCTTGCAGTTGAATGTTCCTCCAATTGATGTTGACAAGGTTAGATGCATCATAAGAAATATTGTCAGGGATTGGGCTCAGGAGGGTCAAAAGGAACGTGATGAGTGCTATAAGCCCATCCTGGAGGAGCTTAATCGTCTATTTCCTAACCGAAGCAAGGAGAGGCCTCCTTCATGCTTAGTTCCTGGTGCTGGGCTTGGGAGATTGGCTCTGGAGATATCCACTCTGGGTTTTGTGAGCCAGGGAAACGAGTTCTCGTATTACATGATGATTTGTTCAAGTTTCATTCTAAACCACACGCAAGAAACCAATGAGTGGACTATATATCCTTGGATACACAGCAACTGCAATTCTCTTTCAGACAATGATCAACTTCGCCCTGTTTCATTTCCTGATATTCACCCCTCAAGCTCAGGGATCACAGAAGGATTTTCTATGTGTGCTGGTGATTTTGTAGAGGTCTACAATGAAGAAAGCCAAGAATCTTCATGGGATGCTGTTGTAACATGCTTCTTCTTGGATACGGCACACAATATCGTTGAATATATAGAGATCATATCAAAAGTTCTCAAGGATGGTGGGGTCTGGATAAATTTGGGTCCGCTTCTGTATCACTTCGCTGACTCCTATGGACCAGATGATGATATGTCTATTG AACTGAGTTTGGAAGATGTG AAAAGAGTTGCTTACCATTATGGA TTTGTGATGGAGGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAAAAGCTCAAAA ACACCA GTGAGGTGGAGATACTCTGTTTGGAACGGTTGGCACAGGCTTA CTGGCTATAGATCAAATTTCAGTCATTCTATGGT GATGCCTATCA GATTTGGAGACGGACAATACGGATGATCCAATTCACGCCACCATTTTTCA CCA TGATATGAAACTATATGGATAGATTGATAGTGCATGCGTTCCATTACTGCGATAAAACCAATCTCCGTCTGCCAAAACATTTGAATGGCACAGGGAAAAACTGTTCCA GTTCGATGTATATCAATTGGCCAATGGGAGCA CTAAGGTATATTAATAAGTTCGATGGTACGTGTTCGAACTGTACAATGACACTGAATTAGTAA ACGGCAAATCAAAGAGCTCAACTTT               ]
[+] EMBL CB638661             [                                                                                               TCCTCCGCCTCGCCGCCGCCGCCGCCGGGGAGGATGGCCGAACGGCGGTACACCGAGCAGGAGGAGGCGCTCGAGATCAGCTCACTCCGCCGCATCATCGCCGCCTACGCCAACTACCACGATGCTGCAGAAAGGGATGTCAAGAGATATGAGCGATCATTCAAAAGGCTTCCTCCTGCCCACAAGGAACTTCTTTTTAACCTTGGTCTGAAGTACCAAAGGCTGAGATGGTGTATATCCATGAATGCATCATTCATCATGGACATGCTTGAGGCATTTGAGCCTCCTTTCGACATGAGTCAGCATGTAGATATGGATGGTCATGATTGCGCAGAGAACATGCATGGACATTGTCATGCAGATTGTGCTCATTCTGTCGATAGGGGTGATTGCTTTAAAAGTTCTATCTCTGTAAGCAATTCCGAGTTGCATGAACCAGACGGTTGCCCCAGGAAAGACGACAAGACTCATGAACTCTCAAGAGAAACTGACAACAAGGACGAGGTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB638662             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAAGTTCTCAAGGATGGTGGGGTCTGGATAAATTTGGGTCCGCTTCTGTATCACTTCGCTGACTCCTATGGACCAGATGATGATATGTCTATTG AACTGAGTTTGGAAGATGTG AAAAGAGTTGCTTACCATTATGGA TTTGTGATGGAGGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAAAAGCTCAAAA ACACCA GTGAGGTGGAGATACTCTGTTTGGAACGGTTGGCACAGGCTTA CTGGCTATAGATCAAATTTCAGTCATTCTATGGT GATGCCTATCA GATTTGGAGACGGACAATACGGATGATCCAATTCACGCCACCATTTTTCA CCA TGATATGAAACTATATGGATAGATTGATAGTGCATGCGTTCCATTACTGCGATAAAACCAATCTCCGTCTGCCAAAACATTTGAATGGCACAGGGAAAAACTGTTCCA GTTCGATGTATATCAATTGGCCAATGGGAGCA CTAAGGTATATTAATAAGTTCGATGGTACGTGTTCGAACTGTACAATGAAACTGAATTAG                                            ]
[+] EMBL BI812067             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATGATATGTCTATTGAAACTGAGTTTGGAAGATGTGAAAAAGAGTTGCTTACCATTATGGATTTTGTGATGGA GTGGAGAAAATGATAGATACCACATAC CTGCAAATATGAAATCAATGATGCAGAATCAGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATC AAAGCTCAAAACAC CCACGTGAGGTGGAGATACTCTGTTTGGAACGGTTGGCACAGGCTTA CTGGCTATAGATCAAATTTCAGTCATTCTATGGT GATGCCTATCA GATTTGGAGACGGACAATACGGATGATCC ATTCACGCCACCATTTTTCA CCA TGATATGAAACTATATGGATAGATTGATAGTGCATGCGTTCCATTACTGCGATAAAACCAATCTCCGTCTGCCAAAACATTTGAATGGCACAGGGAAAAACTGTTCCA GTTCGATGTATATC ATTGGCC ATGGGAGCA CTAAGGTATATTAATAAGTTCGATGGTACGTGTTCGAACTGTAC ATGACACTGAATTAGTAA ACGGC AATCAAAGAGCTCAACTTTTTTGGACTGTAAAAA]
[-] EMBL CF311566             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 cGGAAGATGTG AAAAGAGTTGCTTACCATTATGGA TTTGTGATGGAGGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAAAAGCTCAAAA ACACCA GTGAGGTGGAGATACTCTGTTTGGAACGGTTGGCACAGGCTTA CTGGCTATAGATCAAATTTCAGTCATTCTATGGT GATGCCTATCA GATTTGGAGACGGACAATACGGATGATCCAATTCACGCCACCATTTTTCA CCA TGATATGAAACTATATGGATAGATTGATAGTGCATGCGTTCCATTACTGCGATAAAACCAATCTCCGTCTGCCAAAACATTTGAATGGCACAGGGAAAAACTGTTCCA GTTCGATGTATATCAATTGGCCAATGGGAGCA CTAAGGTATATTAATAAGTTCGATGGTACGTGTTCGAACTGTACAATGACACTGAATTAGTAA ACGGCAAATCAAAGAGCTCAACTTTTTTGGACTGAAAAAA]
[+] EMBL BI807508             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tccgGGCACAGTCTTATCTGGCTATAGAGC AATTTCAGTCATTCTATGGTGGATGCCTATCAGGATTTGGAGACGGACAATACGGATGATCCAATTCACGCCACCATTTTTCACCCACTGATATGAAACTATATGGATAGATTGATAGTGCATGCGTTCCATTACTGCGATAAAACC ATCTCCGTCTGCC AAACATTTGAATGGCACAGGGAAAAACTGTTCCA GTTCGATGTATATC ATT GCCAATGGGAGCATCTAAGGTATATTAATAAGTTCGATGGTACGTGTTCGAACTGTAC ATGACACTGAATTAGTAAGACGGCAAATC AAGAGCT                      ]
[+] EMBL BQ906017             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAAAAACTGTTCCACGTTCGATGTATATC ATTGGCC ATGGGAGCA CTAAGGTATATTAATAAGTTCGATGGTACGTGTTCGAACTGTAC ATGACACTGAATTAGTAA ACGGCAAATCAAAGAGCTCAACTTTTTTGGACTGTAAAAA]




>consensus_12412#0
CCCCTGAGCATAACTGAAGCAAAGACCTCCCCCACGCGACGCGAGACGCGACCCATCATT
CGGAGGCCCACCAATTCATCTGGAGAAAGCTGCGCTCCTCCGCCTCGCCGCCGCCGCCGC
CGGGGAGGATGGCCGAACGGCGGTACACCGAGCAGGAGGAGGCGCTCGAGATCAGCTCAC
TCCGCCGCATCATCGCCGCCTACGCCAACTACCACGATGCTGCAGAAAGGGATGTCAAGA
GATATGAGCGATCATTCAAAAGGCTTCCTCCTGCCCACAAGGAACTTCTTTTTAACCTTG
GTCTGAAGTACCAAAGGCTGAGATGGTGTATATCCATGAATGCATCATTCATCATGGACA
TGCTTGAGGCATTTGAGCCTCCTTTCGACATGAGTCAGCATGTAGATATGGATGGTCATG
ATTGCGCAGAGAACATGCATGGACATTGTCATGCAGATTGTGCTCATTCTGTCGATAGGG
GTGATTGCTTTAGAAGTTCTATCTCTGTAAGCAATTCCGAGTTGCATGAACCAGACGGTT
GCCCCAGGAAAGACGACAAGACTCATGAACTCTCAAGAGAAACTGACAACAAGGACGAGG
TAGTTGACATGGAAAGTTGCTCCCGGCCGGTTGGTGACAAATTGGGGGCATCTCAGGTTG
AAGATAAATCATGTAATGGTGATAAAGCCATGGATGCAGCAGCTAACTGTCAAGATACAG
ATTGTGTTGCATGTTCTGCTGATGAGAATGTGATACCGCAGCAATTCATGGCTCCATCCT
TGCAGTTGAATGTTCCTCCAATTGATGTTGACAAGGTTAGATGCATCATAAGAAATATTG
TCAGGGATTGGGCTCAGGAGGGTCAAAAGGAACGTGATGAGTGCTATAAGCCCATCCTGG
AGGAGCTTAATCGTCTATTTCCTAACCGAAGCAAGGAGAGGCCTCCTTCATGCTTAGTTC
CTGGTGCTGGGCTTGGGAGATTGGCTCTGGAGATATCCACTCTGGGTTTTGTGAGCCAGG
GAAACGAGTTCTCGTATTACATGATGATTTGTTCAAGTTTCATTCTAAACCACACGCAAG
AAACCAATGAGTGGACTATATATCCTTGGATACACAGCAACTGCAATTCTCTTTCAGACA
ATGATCAACTTCGCCCTGTTTCATTTCCTGATATTCACCCCTCAAGCTCAGGGATCACAG
AAGGATTTTCTATGTGTGCTGGTGATTTTGTAGAGGTCTACAATGAAGAAAGCCAAGAAT
CTTCATGGGATGCTGTTGTAACATGCTTCTTCTTGGATACGGCACACAATATCGTTGAAT
ATATAGAGATCATATCAAAAGTTCTCAAGGATGGTGGGGTCTGGATAAATTTGGGTCCGC
TTCTGTATCACTTCGCTGACTCCTATGGACCAGATGATGATATGTCTATTGAACTGAGTT
TGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAGGTGGAGAAAATGA
TAGATACCACATACACTGCAAATATGAAATCAATGATGCAGAATCGGTACCGCGCAGCAT
TTTGGACGATGAGGAAGAATGCATCTCGATCAAAAGCTCAAAAACACCAGTGAGGTGGAG
ATACTCTGTTTGGAACGGTTGGCACAGGCTTACTGGCTATAGATCAAATTTCAGTCATTC
TATGGTGATGCCTATCAGATTTGGAGACGGACAATACGGATGATCCAATTCACGCCACCA
TTTTTCACCATGATATGAAACTATATGGATAGATTGATAGTGCATGCGTTCCATTACTGC
GATAAAACCAATCTCCGTCTGCCAAAACATTTGAATGGCACAGGGAAAAACTGTTCCAGT
TCGATGTATATCAATTGGCCAATGGGAGCACTAAGGTATATTAATAAGTTCGATGGTACG
TGTTCGAACTGTACAATGACACTGAATTAGTAAACGGCAAATCAAAGAGCTCAACTTTTT
TGGACTGTAAAAA

consensusID : consensus_12412#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 831
fasta sequence

                              [GCCGCCGCCGCCGCCGCCGCCGGGGGGGAGGATGGCCGAACGGCGGTACACCGAGCAGGAGGAGGCGCTCGAGATCAGCTCACTCCGCCGCATCATCGCCGCCTACGCCAACTACCACGATGCTGCAGAAAGGGATGTCAAGAGATATGAGCGATCATTCAAAAGGCTTCCTCCTGCCCACAAGGAACTTCTTTTTAACCTTGGTCTGAAGTACCAAAGGCTGAGATGGTGTATATCCATGAATGCATCATTCATCATGGACATGCTTGAGGCTTTTGAGCCTCCTTTCGACATGAGTCAGCATATAGATATGGATGGTCATGATTGCGCAGAGAACATGCATGGACATTGTCATGCAGATTGTGCTCATTCTGTCGATAGGGGTGATTGCTTTAGAAGTTCTATCTCTGTAAGCAATTCCGAGTTGCATGAACCAGACGGTTGCCCCAGGAAAGACGACAAGACTCATGAACTCTCAAGAGAAACTGACAACAAGGACGAGGTAGTTGACATGGAAAGTTGCTCCCGGCCGGTTGGTGACAAATTGGGGGCATCTCAGGTTGAAGATAAATCATGTAATGGTGATAAAGCCATGGATGCAGCAGCTAACTGTCAAGATACAGATTGTGTTGCATGTTCTGCTGATGAGAATGTGATACCGCAGCAATTCATGGCTCCATCCTTGCAGTTGAATGTTCCTCCAATTGATGTTGACAAGGTAAGTGTTTCTATCAACTTCTCATTTGACACATTTCGAACAGAAAGCATACTGCAATGCGTCAAGAAGATAGCCAAAGGTTCATGTTGGTTGACCGCCACAGTTGTTACCCA]

[+] EMBL CB632854             [GCCGCCGCCGCCGCCGCCGCCGGGGGGGAGGATGGCCGAACGGCGGTACACCGAGCAGGAGGAGGCGCTCGAGATCAGCTCACTCCGCCGCATCATCGCCGCCTACGCCAACTACCACGATGCTGCAGAAAGGGATGTCAAGAGATATGAGCGATCATTCAAAAGGCTTCCTCCTGCCCACAAGGAACTTCTTTTTAACCTTGGTCTGAAGTACCAAAGGCTGAGATGGTGTATATCCATGAATGCATCATTCATCATGGACATGCTTGAGGCTTTTGAGCCTCCTTTCGACATGAGTCAGCATATAGATATGGATGGTCATGATTGCGCAGAGAACATGCATGGACATTGTCATGCAGATTGTGCTCATTCTGTCGATAGGGGTGATTGCTTTAGAAGTTCTATCTCTGTAAGCAATTCCGAGTTGCATGAACCAGACGGTTGCCCCAGGAAAGACGACAAGACTCATGAACTCTCAAGAGAAACTGACAACAAGGACGAGGTAGTTGACATGGAAAGTTGCTCCCGGCCGGTTGGTGACAAATTGGGGGCATCTCAGGTTGAAGATAAATCATGTAATGGTGATAAAGCCATGGATGCAGCAGCTAACTGTCAAGATACAGATTGTGTTGCATGTTCTGCTGATGAGAATGTGATACCGCAGCAATTCATGGCTCCATCCTTGCAGTTGAATGTTCCTCCAATTGATGTTGACAAGGTAAGTGTTTCTATCAACTTCTCATTTGACACATTTCGAACAGAAAGCATACTGCAATGCGTCAAGAAGATAGCCAAAGGTTCATGTTGGTTGACCGCCACAGTTGTTACCCA]




>consensus_12412#1
GCCGCCGCCGCCGCCGCCGCCGGGGGGGAGGATGGCCGAACGGCGGTACACCGAGCAGGA
GGAGGCGCTCGAGATCAGCTCACTCCGCCGCATCATCGCCGCCTACGCCAACTACCACGA
TGCTGCAGAAAGGGATGTCAAGAGATATGAGCGATCATTCAAAAGGCTTCCTCCTGCCCA
CAAGGAACTTCTTTTTAACCTTGGTCTGAAGTACCAAAGGCTGAGATGGTGTATATCCAT
GAATGCATCATTCATCATGGACATGCTTGAGGCTTTTGAGCCTCCTTTCGACATGAGTCA
GCATATAGATATGGATGGTCATGATTGCGCAGAGAACATGCATGGACATTGTCATGCAGA
TTGTGCTCATTCTGTCGATAGGGGTGATTGCTTTAGAAGTTCTATCTCTGTAAGCAATTC
CGAGTTGCATGAACCAGACGGTTGCCCCAGGAAAGACGACAAGACTCATGAACTCTCAAG
AGAAACTGACAACAAGGACGAGGTAGTTGACATGGAAAGTTGCTCCCGGCCGGTTGGTGA
CAAATTGGGGGCATCTCAGGTTGAAGATAAATCATGTAATGGTGATAAAGCCATGGATGC
AGCAGCTAACTGTCAAGATACAGATTGTGTTGCATGTTCTGCTGATGAGAATGTGATACC
GCAGCAATTCATGGCTCCATCCTTGCAGTTGAATGTTCCTCCAATTGATGTTGACAAGGT
AAGTGTTTCTATCAACTTCTCATTTGACACATTTCGAACAGAAAGCATACTGCAATGCGT
CAAGAAGATAGCCAAAGGTTCATGTTGGTTGACCGCCACAGTTGTTACCCA

consensusID : consensus_12412#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 797
fasta sequence

                              [TCTGGTTTATTCAGGTTAGATGCATCATAAGAAATATTGTCAGGGATTGGGCTCAGGAGGTATTTTCTGTGCAATTTTGGGTTGGCTTGAAGTGGAACTTCTGTCTGAAAGTAATGATATAATCCGAAAGGAAATATTACCTTTTGTTACTTAAATTGTTGTAGGGTCAAAAGGAACGTGATGAGTGCTATAAGCCCATCCTGGAGGAGCTTAATCGTCTATTTCCTAACCGAAGCAAGGAGAGGCCTCCTTCATGCTTAGTTCCTGGTGCTGGGCTTGGGAGATTGGCTCTGGAGATATCCACTCTGGGTTTTGTGAGCCAGGGAAACGAGTTCTCGTATTACATGATGATTTGTTCAAGTTTCATTCTAAACCACACGCAAGAAACCAATGAGTGGACTATATATCCTTGGATACACAGCACCTGCAATTCTCTTTCAGACAATGATCAACTTCGCCCTGTTTCATTTCCTGATATTCACCCCTCAAGCTCAGGGATCACAGAAGGATTTTTTATGTGTGCTGGTGATTTTGTAGAGGTCTACAATGAAGAAAGCCAAGAATCTTCATGGGATGCTGTTGTAACATGCTTCTTCTTGGATACGGCACACAATATCGTTGAATATATAGAGATCATATCAAAAGTTCTCAAGGATGGTGGGGTCTGGATAAATTTGGGTCCGCTTCTGTATCACNTTCGGGGACTCCTATGGACCAGATGATGATATGTCTATTGAACTGAGTTTGGAAGATGTGAAAAGAGTTGCCTTTCAAAGGTGGATTCGTGATGGAGGTGA]

[-] EMBL CB632855             [TCTGGTTTATTCAGGTTAGATGCATCATAAGAAATATTGTCAGGGATTGGGCTCAGGAGGTATTTTCTGTGCAATTTTGGGTTGGCTTGAAGTGGAACTTCTGTCTGAAAGTAATGATATAATCCGAAAGGAAATATTACCTTTTGTTACTTAAATTGTTGTAGGGTCAAAAGGAACGTGATGAGTGCTATAAGCCCATCCTGGAGGAGCTTAATCGTCTATTTCCTAACCGAAGCAAGGAGAGGCCTCCTTCATGCTTAGTTCCTGGTGCTGGGCTTGGGAGATTGGCTCTGGAGATATCCACTCTGGGTTTTGTGAGCCAGGGAAACGAGTTCTCGTATTACATGATGATTTGTTCAAGTTTCATTCTAAACCACACGCAAGAAACCAATGAGTGGACTATATATCCTTGGATACACAGCACCTGCAATTCTCTTTCAGACAATGATCAACTTCGCCCTGTTTCATTTCCTGATATTCACCCCTCAAGCTCAGGGATCACAGAAGGATTTTTTATGTGTGCTGGTGATTTTGTAGAGGTCTACAATGAAGAAAGCCAAGAATCTTCATGGGATGCTGTTGTAACATGCTTCTTCTTGGATACGGCACACAATATCGTTGAATATATAGAGATCATATCAAAAGTTCTCAAGGATGGTGGGGTCTGGATAAATTTGGGTCCGCTTCTGTATCACNTTCGGGGACTCCTATGGACCAGATGATGATATGTCTATTGAACTGAGTTTGGAAGATGTGAAAAGAGTTGCCTTTCAAAGGTGGATTCGTGATGGAGGTGA]




>consensus_12412#2
TCTGGTTTATTCAGGTTAGATGCATCATAAGAAATATTGTCAGGGATTGGGCTCAGGAGG
TATTTTCTGTGCAATTTTGGGTTGGCTTGAAGTGGAACTTCTGTCTGAAAGTAATGATAT
AATCCGAAAGGAAATATTACCTTTTGTTACTTAAATTGTTGTAGGGTCAAAAGGAACGTG
ATGAGTGCTATAAGCCCATCCTGGAGGAGCTTAATCGTCTATTTCCTAACCGAAGCAAGG
AGAGGCCTCCTTCATGCTTAGTTCCTGGTGCTGGGCTTGGGAGATTGGCTCTGGAGATAT
CCACTCTGGGTTTTGTGAGCCAGGGAAACGAGTTCTCGTATTACATGATGATTTGTTCAA
GTTTCATTCTAAACCACACGCAAGAAACCAATGAGTGGACTATATATCCTTGGATACACA
GCACCTGCAATTCTCTTTCAGACAATGATCAACTTCGCCCTGTTTCATTTCCTGATATTC
ACCCCTCAAGCTCAGGGATCACAGAAGGATTTTTTATGTGTGCTGGTGATTTTGTAGAGG
TCTACAATGAAGAAAGCCAAGAATCTTCATGGGATGCTGTTGTAACATGCTTCTTCTTGG
ATACGGCACACAATATCGTTGAATATATAGAGATCATATCAAAAGTTCTCAAGGATGGTG
GGGTCTGGATAAATTTGGGTCCGCTTCTGTATCACNTTCGGGGACTCCTATGGACCAGAT
GATGATATGTCTATTGAACTGAGTTTGGAAGATGTGAAAAGAGTTGCCTTTCAAAGGTGG
ATTCGTGATGGAGGTGA

consensusID : consensus_12412#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [GTGGGACAACTGATGATGGGATGAGATGTGGATGAGTGGCATGGCGTGTGCCAATGTACTGGCAGATGAAAACCTAATGCTGCCCGGTGCTCCGCCAAAACNATNTTGGAATGGGCACCAGGGAAAAACTGGTTGCCATGTGTGCCGATGGTGATGATGCAATGTGGGCCAATGAGGGAGCACCTGATAGGGTGATGATTGAATGAAGTTCGATGGTACGTGTTCGAACTGTACAATGACACTGAATTAGTAAACGGCAAATCCAAGAGCTCAACTTCTTTTGGACTGTAAAAA]

[+] EMBL BQ907175             [GTGGGACAACTGATGATGGGATGAGATGTGGATGAGTGGCATGGCGTGTGCCAATGTACTGGCAGATGAAAACCTAATGCTGCCCGGTGCTCCGCCAAAACNATNTTGGAATGGGCACCAGGGAAAAACTGGTTGCCATGTGTGCCGATGGTGATGATGCAATGTGGGCCAATGAGGGAGCACCTGATAGGGTGATGATTGAATGAAGTTCGATGGTACGTGTTCGAACTGTACAATGACACTGAATTAGTAAACGGCAAATCCAAGAGCTCAACTTCTTTTGGACTGTAAAAA]




>consensus_12412#3
GTGGGACAACTGATGATGGGATGAGATGTGGATGAGTGGCATGGCGTGTGCCAATGTACT
GGCAGATGAAAACCTAATGCTGCCCGGTGCTCCGCCAAAACNATNTTGGAATGGGCACCA
GGGAAAAACTGGTTGCCATGTGTGCCGATGGTGATGATGCAATGTGGGCCAATGAGGGAG
CACCTGATAGGGTGATGATTGAATGAAGTTCGATGGTACGTGTTCGAACTGTACAATGAC
ACTGAATTAGTAAACGGCAAATCCAAGAGCTCAACTTCTTTTGGACTGTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12412#0      CCCCTGAGCATAACTGAAGCAAAGACCTCCCCCACGCGACGCGAGACGCGACCCATCATT 60
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      CGGAGGCCCACCAATTCATCTGGAGAAAGCTGCGCTCCTCCGCCTCGCCGCCGCCGCCGC 120
consensus_12412#1      -----------------------------------GCCGCCGCC--GCCGCCGCCGCCGG 23
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      CGGGGAGGATGGCCGAACGGCGGTACACCGAGCAGGAGGAGGCGCTCGAGATCAG-CTCA 179
consensus_12412#1      GGGGGAGGATGGCCGAACGGCGGTACACCGAGCAGGAGGAGGCGCTCGAGATCAG-CTCA 82
consensus_12412#2      ---TCTGGTTTATTCAGGTTAGATGCATC--ATAAGAAATATTGTCAGGGATTGGGCTCA 55
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      CTCCGCCGCATCATCGCCGCCTACGCCAACTACCACGATGCTGCAGAAAGGGATGTCAAG 239
consensus_12412#1      CTCCGCCGCATCATCGCCGCCTACGCCAACTACCACGATGCTGCAGAAAGGGATGTCAAG 142
consensus_12412#2      ---GGAGGTATTTTCTGTGCAATTTTGGGTTGGCTTGAAGT----GGAACTTCTGTCTGA 108
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      AGATATGAGCGATCATTCAAAAGGC--TTCCTCCTGCCCACAAGGAACTTCTTTTTAACC 297
consensus_12412#1      AGATATGAGCGATCATTCAAAAGGC--TTCCTCCTGCCCACAAGGAACTTCTTTTTAACC 200
consensus_12412#2      AAGTAATGAT-ATAATCCGAAAGGAAATATTACCTTTTGTTACTTAAATTGTTGTAGGGT 167
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      TTGGTCTGAAGTACCAAAGGCTGAGATGGTGTATATCCATGAATGCATCATTCATCATGG 357
consensus_12412#1      TTGGTCTGAAGTACCAAAGGCTGAGATGGTGTATATCCATGAATGCATCATTCATCATGG 260
consensus_12412#2      CAAAAGGAACGTGATGAGTGCTATAA----GCCCATCCTGGAGGAGCTTAATCGTCTATT 223
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      ACATGCTTGAGGCATTTGA--GCCTCCTTTCGACATGAGTCAGCATG-TAGATATGGATG 414
consensus_12412#1      ACATGCTTGAGGCTTTTGA--GCCTCCTTTCGACATGAGTCAGCATA-TAGATATGGATG 317
consensus_12412#2      TCCTAACCGAAGCAAGGAGAGGCCTCCTTCATGCTTAGTTCCTGGTGCTGGGCTTGGGAG 283
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      GTCATGATTGCGCAGAGAACATGCATGGACATTGTCATGCAGATTGTGCTCATTCTGTCG 474
consensus_12412#1      GTCATGATTGCGCAGAGAACATGCATGGACATTGTCATGCAGATTGTGCTCATTCTGTCG 377
consensus_12412#2      AT--TGGCTCTGGAGATATCCACTCTGGGTTTTGTGAGCCAGGG-AAACGAGTTCTCGTA 340
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      ATAGG-GGTGATTGCTTTAGAAGTTCTATCTCTGTAAGCAATTCCGA-GTTGCATGAACC 532
consensus_12412#1      ATAGG-GGTGATTGCTTTAGAAGTTCTATCTCTGTAAGCAATTCCGA-GTTGCATGAACC 435
consensus_12412#2      TTACATGATGATTTGTTC--AAGTTTCATTCTAAACCACACGCAAGA-AACCAATGAGTG 397
consensus_12412#3      -----------------------------------------GTGGGACAACTGATGATGG 19
                                                                    **      ****   

consensus_12412#0      AGACGGTTGCCCCAGGAAAGACGACAAGACTCATGAACTCTCAAGAGAAACTGACAAC-- 590
consensus_12412#1      AGACGGTTGCCCCAGGAAAGACGACAAGACTCATGAACTCTCAAGAGAAACTGACAAC-- 493
consensus_12412#2      GACTATATATCCTTGGATACACAGCA---CCTGCAATTCTCTTTCAGACAATGAT--C-- 450
consensus_12412#3      GATGAGATGT----GGATGAGTGGCATGGCGTGTGCCAATGTACTGGCAGATGAAAACCT 75
                              *      ***       **   *                *    ***   *  

consensus_12412#0      AAGGACGAGGTAGTTGACATGGAAAGTTGCTCCCGGCCGGTT-GGTGACAAATTGGGGGC 649
consensus_12412#1      AAGGACGAGGTAGTTGACATGGAAAGTTGCTCCCGGCCGGTT-GGTGACAAATTGGGGGC 552
consensus_12412#2      AACTTCGCCCTGTTTCATTTCCTGATATTCACCCCTCAAGCTCAGGGATCACAGAAGGAT 510
consensus_12412#3      AATGCTGCCCGGTGCTCCGCCAAAACNATNTTGGAATGGGCACCAGGGAAAAACTGG--- 132
                       **    *                 *              *      *   *     *   

consensus_12412#0      ATCTCAGGTTGAAGATAAATCATGTAATGGTGATAAAGCCATGGATGCAGCAGCTAACTG 709
consensus_12412#1      ATCTCAGGTTGAAGATAAATCATGTAATGGTGATAAAGCCATGGATGCAGCAGCTAACTG 612
consensus_12412#2      TTTTTATGTGTGCTGGTGATTTTGTAGAGGTCT----ACAATGAAGAAAGCCAAGAATCT 566
consensus_12412#3      TTGCCATGTGTGCCGATGGTGATGATGCAATGT--GGGCCAATGAGGGAGCACCTGATAG 190
                        *   * **          *  **      *       * *   *   ***     *   

consensus_12412#0      TCAAGATACAGA-TTGTGTTGCATGTTCTGCTGATGAGAATGTGATACCGCAGCAATTCA 768
consensus_12412#1      TCAAGATACAGA-TTGTGTTGCATGTTCTGCTGATGAGAATGTGATACCGCAGCAATTCA 671
consensus_12412#2      TCATGGGAT-GC-TGTTGTAACATGCTTC-TTCTTGGATACGGCACACAATATCGTTGAA 623
consensus_12412#3      GGTGATGATTGAATGAAGTTCGATGGTACGTGTTCGAA----CTGTACAATGACACTGAA 246
                              *  *  *   **   *** *        *          **     *  *  *

consensus_12412#0      TGGCTCCATCCTTGCAGTTGAATGTTCCTCCAATTGATGTTGACAAGGTTAGA----TGC 824
consensus_12412#1      TGGCTCCATCCTTGCAGTTGAATGTTCCTCCAATTGATGTTGACAAGGTAAGT----GTT 727
consensus_12412#2      TA--TATAGAGATCATATCAAAAGTTCTCAAGGATGGTGGGGTCTGGATAAATTTGGGTC 681
consensus_12412#3      TTAGTA-AACGGCAAATCCAAGAGCTC---AACTTCTTTTGGACTGTAAAAA-------- 294
                       *   *  *            *  * **       *  *   * *      *         

consensus_12412#0      ATCAT-AAGAAATATTGTC---AGGGATTGGGCTCAGG-------AGGGTCA----AAAG 869
consensus_12412#1      TCTATCAACTTCTCATTTG---ACACATTTCGAACAGA-------AAGCATACTGCAATG 777
consensus_12412#2      CGCTTCTGTATCACNTTCGGGGACTCCTATGGACCAGATGATGATATGTCTATTGAACTG 741
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      GAACGTGATGAGT-GCTATAAGCCCATCCTGGAGGAGCTTAATCGTCTATTTCCTAACCG 928
consensus_12412#1      CGTCAAGAAGATA-GCCAAAGGTTCATGTTGGTTGACCGCCACAGT-TGTTACCCA---- 831
consensus_12412#2      AGTTTGGAAGATGTGAAAAGAGTTGCCTTTCAAAGGTGGATTCGTGATGGAGGTGA---- 797
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      AAGCAAGGAGAGGCCTCCTTCATGCTTAGTTCCTGGTGCTGGGCTTGGGAGATTGGCTCT 988
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      GGAGATATCCACTCTGGGTTTTGTGAGCCAGGGAAACGAGTTCTCGTATTACATGATGAT 1048
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      TTGTTCAAGTTTCATTCTAAACCACACGCAAGAAACCAATGAGTGGACTATATATCCTTG 1108
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      GATACACAGCAACTGCAATTCTCTTTCAGACAATGATCAACTTCGCCCTGTTTCATTTCC 1168
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      TGATATTCACCCCTCAAGCTCAGGGATCACAGAAGGATTTTCTATGTGTGCTGGTGATTT 1228
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      TGTAGAGGTCTACAATGAAGAAAGCCAAGAATCTTCATGGGATGCTGTTGTAACATGCTT 1288
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      CTTCTTGGATACGGCACACAATATCGTTGAATATATAGAGATCATATCAAAAGTTCTCAA 1348
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      GGATGGTGGGGTCTGGATAAATTTGGGTCCGCTTCTGTATCACTTCGCTGACTCCTATGG 1408
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      ACCAGATGATGATATGTCTATTGAACTGAGTTTGGAAGATGTGAAAAGAGTTGCTTACCA 1468
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      TTATGGATTTGTGATGGAGGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAA 1528
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      ATCAATGATGCAGAATCGGTACCGCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCG 1588
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      ATCAAAAGCTCAAAAACACCAGTGAGGTGGAGATACTCTGTTTGGAACGGTTGGCACAGG 1648
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      CTTACTGGCTATAGATCAAATTTCAGTCATTCTATGGTGATGCCTATCAGATTTGGAGAC 1708
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      GGACAATACGGATGATCCAATTCACGCCACCATTTTTCACCATGATATGAAACTATATGG 1768
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      ATAGATTGATAGTGCATGCGTTCCATTACTGCGATAAAACCAATCTCCGTCTGCCAAAAC 1828
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      ATTTGAATGGCACAGGGAAAAACTGTTCCAGTTCGATGTATATCAATTGGCCAATGGGAG 1888
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      CACTAAGGTATATTAATAAGTTCGATGGTACGTGTTCGAACTGTACAATGACACTGAATT 1948
consensus_12412#1      ------------------------------------------------------------
consensus_12412#2      ------------------------------------------------------------
consensus_12412#3      ------------------------------------------------------------
                                                                                   

consensus_12412#0      AGTAAACGGCAAATCAAAGAGCTCAACTTTTTTGGACTGTAAAAA 1993
consensus_12412#1      ---------------------------------------------
consensus_12412#2      ---------------------------------------------
consensus_12412#3      ---------------------------------------------