cluster # 12414

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Oryza sativa
cluster # 12414 cluster # 12414 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12414#0 length = 669 sequences # 8

consensus_12414#1 length = 399 sequences # 2

consensusID : consensus_12414#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 669
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTAACTCAAATAAATACGAGGCCTTGGCAATATAATTCACCTTTTGTTACACGTGATCGTTGCCACCTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCTGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGAGTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCACTATCTCAAGTTCTCAATGGAATGGAATCTCTGCTGGCTTCATGTGCCCTTGCACTCCCCCTTGTCTCG]

[+] EMBL CA755925             [TTTTTTTTTTTTTTTTTTTTAACTCAAATAAATACGAGGCCTTGGCAATATAATTCACCTTTTGTTACACGTGATCGTTGCCACCTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCTGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGAGTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCAC GTCTC                                                              ]
[+] EMBL CA761314             [ TTTTTTTTTTTTTTTTTTTAACTCAAATAAATATGAGGCCTTGGCAATATAATTCACCTTTTGTTACACGTGATCGTTGCCACCTGTGCTGACTCACAGCCACATCTCAAACATAAGCTATGTCACAAGACTCAAACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAAACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATAAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTCGGGGTGGTTGTTTGGGCCCGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGTTGGGCTGCCTCTGACTAAGGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAGGAAGTAGAATGCCAACAAGGTGATAAAAAGATAGTANAGTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCACTATCTCAAGTTCTCAATGGAATGGAATCTCTGCTGGCTTCATGTGCCCTTGCACTCCCCCTTGTCTCG]
[+] EMBL CF280815             [                TTTTAACTCAAATAAATACGAGGCCTTGGCAATATAATTCACCTTTTGTTACACGTGATCGTTGCCACCTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCTTGAAGGGAAGGGCACTTGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCTGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTGGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGA                                                                                                                                                                     ]
[+] EMBL CB965122             [                                      GCC TGGCAATATAATTCACC TTTGTTACACGTGATTG TGCCACTTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCCGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGAGTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCACTATCTCAAGTTCTCAATGGAATGGAA                                          ]
[-] EMBL BU672808             [                                       CCTTGGCAATATAATTCACCTTTTGTTACACGTGATTGTTGCCACTTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCCGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGAGTGGTAGTGCTGGTGATTTCCCC TTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCACTATCTCAAGTTCTC ATGGAATGGAt                                          ]
[-] EMBL BI306104             [                                             CAATATAATTCACCTTTTGTTACACGTGATTGTTGCCACTTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCCGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTNTTGGGAGCGGcc                                                                                                                                                                                             ]
[-] EMBL AK062405             [                                                                            GTTGCCACCTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCTGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGAGTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCACTATCTCAAGTTCTCAATGGAATGGAATCTCTGCTGGCTTCATGTGC                      ]
[-] EMBL CF280814             [                                                                                                                            CACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACTTGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGG GGCTTGTGG GG TGTTTGGG CTGAGGG GCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTGGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGAGTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCACTATCTCAAGTTCTCAATGGAATGGAATCTCTGCTGGCTTCATGT                        ]




>consensus_12414#0
TTTTTTTTTTTTTTTTTTTTAACTCAAATAAATACGAGGCCTTGGCAATATAATTCACCT
TTTGTTACACGTGATCGTTGCCACCTGTGCTGACTCACAGCCACATCTCATACATAAGCT
ATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGG
CACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATA
TATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGT
TTGGGCCTGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGT
CCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTC
TGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTA
TAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGA
GTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCA
CTATCTCAAGTTCTCAATGGAATGGAATCTCTGCTGGCTTCATGTGCCCTTGCACTCCCC
CTTGTCTCG

consensusID : consensus_12414#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 399
fasta sequence

                              [ACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAAT-CCTAGCTAGC-TAG-CTAGC-TGCTCA-GCTCCAAC-CCGGTGGC-TTGTGGTGGTTGTTTGGGCC-CGAGGGTGCATAGTC-CTGTGTCTC-CAAAGCCATC-CTCGCATTGATCATGGCGTCCTCCTCT-AGGGCAACAAC-TGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGGGAGCGCCCAGCTATTCCCTTAGT]

[-] EMBL CB964778             [ACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAAT CCTAGCTAGC TAG CTAGC TGCTCA GCTCCAAC CCGGTGGC TTGTGGTGGTTGTTTGGGCC CGAGGGTGCATAGTC CTGTGTCTC CAAAGCCATC CTCGCATTGATCATGGCGTCCTCCTCT AGGGCAACAAC TGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGGGAGCGCCCAGCTATTCCCTTAGT]
[-] EMBL CB967072             [                                                                                                                                              aATATGAATCCCTAGCTAGCATAGACTAGCGTGCTCACGCTCCAACACCGGTGGCATTGTGGTGGTTGTTTGGGCCACGAGGGTGCATAGTCACTGTGTCTCACAAAGCCATCACTCGCATTGATCATGGCGTCCTCCTCTAAGGGCAACAACATGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTT                         ]




>consensus_12414#1
ACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTT
GCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGC
ACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCC
AACCCGGTGGCTTGTGGTGGTTGTTTGGGCCCGAGGGTGCATAGTCCTGTGTCTCCAAAG
CCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCA
TCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCA
GCCTTTGCACTCTTGGGAGCGCCCAGCTATTCCCTTAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12414#0      TTTTTTTTTTTTTTTTTTTTAACTCAAATAAATACGAGGCCTTGGCAATATAATTCACCT 60
consensus_12414#1      ------------------------------------------------------------
                                                                                   

consensus_12414#0      TTTGTTACACGTGATCGTTGCCACCTGTGCTGACTCACAGCCACATCTCATACATAAGCT 120
consensus_12414#1      ------------------------------------ACAGCCACATCTCATACATAAGCT 24
                                                           ************************

consensus_12414#0      ATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGG 180
consensus_12414#1      ATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGG 84
                       ************************************************************

consensus_12414#0      CACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATA 240
consensus_12414#1      CACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATA 144
                       ************************************************************

consensus_12414#0      TATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGT 300
consensus_12414#1      TATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGT 204
                       ************************************************************

consensus_12414#0      TTGGGCCTGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGT 360
consensus_12414#1      TTGGGCCCGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGT 264
                       ******* ****************************************************

consensus_12414#0      CCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTC 420
consensus_12414#1      CCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTC 324
                       ************************************************************

consensus_12414#0      TGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTA 480
consensus_12414#1      TGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGGGAGCGCCC 384
                       *************************************************** *** *   

consensus_12414#0      TAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGA 540
consensus_12414#1      AGCTATTCCCTTAGT--------------------------------------------- 399
                           ***                                                     

consensus_12414#0      GTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCA 600
consensus_12414#1      ------------------------------------------------------------
                                                                                   

consensus_12414#0      CTATCTCAAGTTCTCAATGGAATGGAATCTCTGCTGGCTTCATGTGCCCTTGCACTCCCC 660
consensus_12414#1      ------------------------------------------------------------
                                                                                   

consensus_12414#0      CTTGTCTCG 669
consensus_12414#1      ---------