These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 669 fasta sequence [TTTTTTTTTTTTTTTTTTTTAACTCAAATAAATACGAGGCCTTGGCAATATAATTCACCTTTTGTTACACGTGATCGTTGCCACCTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCTGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGAGTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCACTATCTCAAGTTCTCAATGGAATGGAATCTCTGCTGGCTTCATGTGCCCTTGCACTCCCCCTTGTCTCG] [+] EMBL CA755925 [TTTTTTTTTTTTTTTTTTTTAACTCAAATAAATACGAGGCCTTGGCAATATAATTCACCTTTTGTTACACGTGATCGTTGCCACCTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCTGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGAGTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCAC GTCTC ] [+] EMBL CA761314 [ TTTTTTTTTTTTTTTTTTTAACTCAAATAAATATGAGGCCTTGGCAATATAATTCACCTTTTGTTACACGTGATCGTTGCCACCTGTGCTGACTCACAGCCACATCTCAAACATAAGCTATGTCACAAGACTCAAACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAAACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATAAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTCGGGGTGGTTGTTTGGGCCCGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGTTGGGCTGCCTCTGACTAAGGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAGGAAGTAGAATGCCAACAAGGTGATAAAAAGATAGTANAGTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCACTATCTCAAGTTCTCAATGGAATGGAATCTCTGCTGGCTTCATGTGCCCTTGCACTCCCCCTTGTCTCG] [+] EMBL CF280815 [ TTTTAACTCAAATAAATACGAGGCCTTGGCAATATAATTCACCTTTTGTTACACGTGATCGTTGCCACCTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCTTGAAGGGAAGGGCACTTGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCTGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTGGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGA ] [+] EMBL CB965122 [ GCC TGGCAATATAATTCACC TTTGTTACACGTGATTG TGCCACTTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCCGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGAGTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCACTATCTCAAGTTCTCAATGGAATGGAA ] [-] EMBL BU672808 [ CCTTGGCAATATAATTCACCTTTTGTTACACGTGATTGTTGCCACTTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCCGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGAGTGGTAGTGCTGGTGATTTCCCC TTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCACTATCTCAAGTTCTC ATGGAATGGAt ] [-] EMBL BI306104 [ CAATATAATTCACCTTTTGTTACACGTGATTGTTGCCACTTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCCGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTNTTGGGAGCGGcc ] [-] EMBL AK062405 [ GTTGCCACCTGTGCTGACTCACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGTTTGGGCCTGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGAGTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCACTATCTCAAGTTCTCAATGGAATGGAATCTCTGCTGGCTTCATGTGC ] [-] EMBL CF280814 [ CACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACTTGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGG GGCTTGTGG GG TGTTTGGG CTGAGGG GCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGTCCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTGGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTATAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGAGTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCACTATCTCAAGTTCTCAATGGAATGGAATCTCTGCTGGCTTCATGT ] consensusID : consensus_12414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 399 fasta sequence [ACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAAT-CCTAGCTAGC-TAG-CTAGC-TGCTCA-GCTCCAAC-CCGGTGGC-TTGTGGTGGTTGTTTGGGCC-CGAGGGTGCATAGTC-CTGTGTCTC-CAAAGCCATC-CTCGCATTGATCATGGCGTCCTCCTCT-AGGGCAACAAC-TGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGGGAGCGCCCAGCTATTCCCTTAGT] [-] EMBL CB964778 [ACAGCCACATCTCATACATAAGCTATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGGCACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATATATGAAT CCTAGCTAGC TAG CTAGC TGCTCA GCTCCAAC CCGGTGGC TTGTGGTGGTTGTTTGGGCC CGAGGGTGCATAGTC CTGTGTCTC CAAAGCCATC CTCGCATTGATCATGGCGTCCTCCTCT AGGGCAACAAC TGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGGGAGCGCCCAGCTATTCCCTTAGT] [-] EMBL CB967072 [ aATATGAATCCCTAGCTAGCATAGACTAGCGTGCTCACGCTCCAACACCGGTGGCATTGTGGTGGTTGTTTGGGCCACGAGGGTGCATAGTCACTGTGTCTCACAAAGCCATCACTCGCATTGATCATGGCGTCCTCCTCTAAGGGCAACAACATGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTCTGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12414#0 TTTTTTTTTTTTTTTTTTTTAACTCAAATAAATACGAGGCCTTGGCAATATAATTCACCT 60 consensus_12414#1 ------------------------------------------------------------ consensus_12414#0 TTTGTTACACGTGATCGTTGCCACCTGTGCTGACTCACAGCCACATCTCATACATAAGCT 120 consensus_12414#1 ------------------------------------ACAGCCACATCTCATACATAAGCT 24 ************************ consensus_12414#0 ATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGG 180 consensus_12414#1 ATGTCACAAGACTCAGACTACCAATCAAGAGGTTTTGCAAAATCGTCATGAAGGGAAGGG 84 ************************************************************ consensus_12414#0 CACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATA 240 consensus_12414#1 CACATGCACATGAGACTGCATGAGTAAGATATAAGCACACACTTTGATATAGGTGATATA 144 ************************************************************ consensus_12414#0 TATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGT 300 consensus_12414#1 TATGAATCCTAGCTAGCTAGCTAGCTGCTCAGCTCCAACCCGGTGGCTTGTGGTGGTTGT 204 ************************************************************ consensus_12414#0 TTGGGCCTGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGT 360 consensus_12414#1 TTGGGCCCGAGGGTGCATAGTCCTGTGTCTCCAAAGCCATCCTCGCATTGATCATGGCGT 264 ******* **************************************************** consensus_12414#0 CCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTC 420 consensus_12414#1 CCTCCTCTAGGGCAACAACTGGTCTCTCCATTTCCATCTTTGGCTTTGCTGTGCTGCCTC 324 ************************************************************ consensus_12414#0 TGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGAGAGAGGTA 480 consensus_12414#1 TGACTAATGGCATCTCACTGGACTCTTGCAAGTGCAGCCTTTGCACTCTTGGGAGCGCCC 384 *************************************************** *** * consensus_12414#0 TAGCATTGGAAGGAACAATCAAGAAGTAGAATGCCAACAAGGTGATAAGAAGATAGTAGA 540 consensus_12414#1 AGCTATTCCCTTAGT--------------------------------------------- 399 *** consensus_12414#0 GTGGTAGTGCTGGTGATTTCCCCATTGTATGCATGCACTATAGAAGGCTGTTGAGCAGCA 600 consensus_12414#1 ------------------------------------------------------------ consensus_12414#0 CTATCTCAAGTTCTCAATGGAATGGAATCTCTGCTGGCTTCATGTGCCCTTGCACTCCCC 660 consensus_12414#1 ------------------------------------------------------------ consensus_12414#0 CTTGTCTCG 669 consensus_12414#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||