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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1302 fasta sequence
[TTTTTTTTTTGTGAAATTGTATGTTGCCATTACCAGTGATGTCTTCACTGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAAGGATGCAGTAAACTCTCAGGAACTGACTTAGAATGGACAGCTGATAATAGAGCTTTTGCACTGCACATTGATTGTACTCTGTCAA-CTGGTTGCTAAATGCTAAAAGTTCTGT-AGATAGTAAAACCAGCT-AGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTGCGTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGAGCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATCCAATATTTAGCCCAGAAAGACTTCTCAGGTG-ATTTCACCACTTCACCA-AGACCATTTTCGGCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTCTTCAGAACAGTGTATGAATTGAATACCCACTTTGATGGCATTTTCACTGGACGGGGATATGTGCCACCCCCCAACAGAACCATAATTAACTGCTAAAATATTTACACCATCCATGTGGATAACAATATGTTCATCCAAACTTTCACGTGGTATGCATCTAGCTTTGATTGAGGAAACAACATAGTCTTTTCTTGCAGGATCCAACACATTAGACAGCAACCTAATTGAATAAAAACCATCTTCATCCAGCAATTTTTTAAATGCATCCTTTTCATCACCAGTCAACTCGTTCCTTGTGAACCGAAGCTTAGTGAGAGTCTGGGATCCGTGCGCGGAGGACTTGAGGCGGGCGGAGAAGGACCCCGCGGGGACGAACCCGGCGCCGAGGTCGTGCTCGAGCGAGNACTGCACGGCGCTGGACTCCGCCGCCGCNGNGCTGCTGTCCCCGGGCCGCCGGCGGGAGGAGGAGACCGCCGCCGCAGCGGGCGCGGGCGGCCCTGGCGTGGGGCGTGCGCCCGCGCCCTCGAACTCGTCGTCGTCGTGGAGGAGCAGCTCGTCGGACTGGAAGGCGGAGGCGGCGGCGAGGGAGAGGGAGAGGGCGAGGAGGAGGAGGAGGGGGAGGAGGCGAGGGCGGCGCGGCGCGGCCATGGCTTCTGGTCGGGGGAG]
[-] EMBL AU032295 [TTTTTTTTTTGTGAAATTGTATGTT CCATTACCAGTGATGTATTCACTGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAAGGATGCAGTAAACTCTCAGGAACTGACTTAGAATGGACAGCTGATAATAGAGCTTTTGCACTGCACATTGATTGTACTCTGTCAACCTGGTTGCTAAATGCNAAAAGTTCTGTAAGATAGTAAAACCAGCTAAGCAAATNGCCTTTGGATCTAAGCAG ]
[+] EMBL CF327011 [ TTTTTTGTGAAATTGTATGTTGCCATTACCAGTGATGTCTTCACTGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTA ]
[-] EMBL CF327012 [ TTTTTGTGAAATTGTATGTTGCCATTACCAGTGATGTCTTCACTGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTG GGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAA ]
[-] EMBL AU164476 [ TTTTTGAAATTGTATGTTGCCATTACCAGTGATGTCTTCACTGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAAGGATGCAGTAAACTCTCAGGAACTGACTTAGAATGGACAGCTGATAATAGAGCTTTTGCACTGCACATTGATTGTACTCTGTCAA CTGGTTGCTAAATGCTAAAAGTTCTGT AGATAGTAAAACCAGCT AGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTGCGTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGAGCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGA ]
[+] EMBL CB683883 [ TGTTGCCATTACCAGTGATGCCTTCAATGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAAGGATGCAGTAAACTCTCAGGAACTGACTTAGAATGGACAGCTGATAATAGAGCTTTTGCACTGCACATTGATTGTACTCTGTCAA CTGGTTGCTAAATGCTAAAAGTTCTGT AGATAGTAAAACCAGCT AGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTGCGTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGAGCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATCCAATATTTAGCCCAGAAAGACTTCTCAGGTG ATTTCACCACTTCACCA AGACCATTTTCGGCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTCTTCAGAACAGTGTATGAATTGAATACCCACTTTGATGGCATTTTCACTGGACGGGGATATGTGCCACCCCCCAACAGAACC ]
[+] EMBL BI306547 [ AGTGATGTCTTCACTGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAAGGATGCAGTAAACTCTCAGGAACTGACTTAGAATGGACAGCTGATAATAGAGCTTTTGCACTGCACATTGATTGTACTCTGTCAA CTGGTTGCTAAATGCTAAAAGTTCTGT AGATAGTAAAACCAGCT AGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTTATTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGAGCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATCCAATATTTAGCCCAGAAAGACTTCTCAGGTG ATTTCACCACTTCACCA AGACCATTTTCGGCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTC ]
[-] EMBL CF303999 [ TCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATCCAATATTTAGCCCAGAAAGACTTCTCAGGTGNATTTCACCACTTCACCANAGACCATTTTCGGCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTCTTCAGAACAGTGTATGAATTGAATACCCACTTTGATGGCATTTTCACTGGACGGGGATATGTG CACCCGCCAACAGAACCATAATTAACTGCTAAAATATTTACACCATCCATGTGGATAACAATATGTTCATCCAAACTTTCACGTGGTATGCATCTAGCTTTGATTGAGGAAACAACATAGTCTTTTCTTGCAGGATCCAACACATTAGACAGCAACCTAATTGAATAAAAACCATCTTCATCCAGCAATTTTTTAAATGCATCCTTTTCATCACCAGTCAACTCGTTCCTTGTGAACCGAAGCTTAGTGAGAGTCTGGGATCCGTGCGCGGAGGACTTGAGGCGGGCGGAGAAGGACCCCGCGGGGACGAACCCGGCGCCGAGGTCGTGCTCGAGCGAG ]
[-] EMBL AU032294 [ CCAACACATTAAACAGCAACCTAATTGAAT AAAACCATCTTCATCCAGCAATTTTTTAAATGCATCCTTTTCATCACCAGTCAACTCGTTCCTTGTGAACCGAAGCTTAGTGAGAGTCTGGGAGCCGTGCGCGGAGGACTTNAGGCAGGCGGAGAAGGACCCCGCGGGGACGAACCCGGCGCCGAGNTCGTGCTCGAGCGAGNACTGCACGGCGCTGGACTCCGCCGCCGCNGNGCTGCTGTCCCCGGGCCGCCGGCGGGAGGAGGAGACCGCCGCCGCAGCGGGCGCGGGCGGCCCTGGCGTGGGGCGTGCGCCCGCGCCCTCGAACTCGTCGTCGTCGTGGAGGAGCAGCTCGTCGGACTGGAAGGCGGAGGCGGCGG ]
[-] EMBL CB683491 [ CCTCCGCCGCGCTGTTGTCCCCGGGCCGCCGGCGGGAGGAGGACACCGCCTCCGCCGCGGGCGCGGTCGGCCCTGGCGTGGGCCTTGCGCCCGCGCCCTCGAACTCGTCGTCGTCGTGGAGGAGCAGCTCGTCGGACTGGAAGGCGGAGGCGGCGGCGAGGGAGAGGGAGAGGGCGAGGAGGAGGAGGAGGGGGAGGAGGCGAGGGCGGCGCGGCGCGGCCATGGCTTCTGGTCGGGGGAG]
consensusID : consensus_12418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[GCTTGCGCCCGCTCTCGCTTCTACTCTTCTTTGCATGGTGCTCGCCCATGATGGCCTGTTGTGGGTCGCGCGCTTCAACGACATTCATTTTCGGCGCTAAATGATCCGGCCAGAGAACAGTTGCGCACTACCTAAAAACTAAAGACTTCCCTTACCACCTGACTGCTTAATGATGCAGACCAACTCTCTTGAACTGACTTAGAATGGACACGCTGATAATACAACCTTTCGCACTGCACATGGTAATGCCACTCTGGCCACTGGTTGCTACCTGCTAAAAGCCATTTGGATCTACAAACACCTAGGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTTATTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGAGCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATCCAATATTTAGCCCAGAAAGACTTCTCAGGTGATTTCACCACTTCACCAAGACCATTTTCGGCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTC]
[+] EMBL BI306207 [GCTTGCGCCCGCTCTCGCTTCTACTCTTCTTTGCATGGTGCTCGCCCATGATGGCCTGTTGTGGGTCGCGCGCTTCAACGACATTCATTTTCGGCGCTAAATGATCCGGCCAGAGAACAGTTGCGCACTACCTAAAAACTAAAGACTTCCCTTACCACCTGACTGCTTAATGATGCAGACCAACTCTCTTGAACTGACTTAGAATGGACACGCTGATAATACAACCTTTCGCACTGCACATGGTAATGCCACTCTGGCCACTGGTTGCTACCTGCTAAAAGCCATTTGGATCTACAAACACCTAGGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTTATTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGAGCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATCCAATATTTAGCCCAGAAAGACTTCTCAGGTGATTTCACCACTTCACCAAGACCATTTTCGGCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12418#0 ------------TTTTTTTTTTGTGAAATTGTATGTTGCCATTACCAGTGATGTCTTCAC 48
consensus_12418#1 GCTTGCGCCCGCTCTCGCTTCTACTCTTCTTTGCATGGTGCTCGCCCATGATGGCCT-GT 59
* * ** * * * * * * ** ***** * *
consensus_12418#0 TGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGA 108
consensus_12418#1 TGTGG-GTCGCG-CGCTTCAACGACATTCATTTTCGGCGCTAAATGATCCGGCCAGAGAA 117
** * * * * **** * * * *** ***** * * ** * *
consensus_12418#0 CAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAAGGATGCA 168
consensus_12418#1 CAGTTGCGCACTACCTAAAAACTAAAGACTTCCCTTACCACCTGACTGCTTAATGATGCA 177
** ** * * * * ***** **** **** ****** *** ******
consensus_12418#0 G-TAAACTCTCAGGAACTGACTTAGAATGGACA-GCTGATAATAGAGCTTTT-GCACTGC 225
consensus_12418#1 GACCAACTCTCTTGAACTGACTTAGAATGGACACGCTGATAATACAACCTTTCGCACTGC 237
* ******* ******************** ********** * * *** *******
consensus_12418#0 ACAT--TGATTGTACTCTGTCAACTGGTTGCTAAATGCTAAAAGTTCTGTAGATAGTAAA 283
consensus_12418#1 ACATGGTAATGCCACTCTGGCCACTGGTTGCTACCTGCTAAAAGCCATTTGGATC-TACA 296
**** * ** ****** * *********** ********* * * *** ** *
consensus_12418#0 ACCAGCTAG-CAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTGC 342
consensus_12418#1 AACACCTAGGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTTA 356
* ** **** ************************************************
consensus_12418#0 GTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGA 402
consensus_12418#1 TTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGA 416
***********************************************************
consensus_12418#0 GCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGC 462
consensus_12418#1 GCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGC 476
************************************************************
consensus_12418#0 ATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATC 522
consensus_12418#1 ATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATC 536
************************************************************
consensus_12418#0 CAATATTTAGCCCAGAAAGACTTCTCAGGTGATTTCACCACTTCACCAAGACCATTTTCG 582
consensus_12418#1 CAATATTTAGCCCAGAAAGACTTCTCAGGTGATTTCACCACTTCACCAAGACCATTTTCG 596
************************************************************
consensus_12418#0 GCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTCTTCAGA 642
consensus_12418#1 GCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTC------ 650
******************************************************
consensus_12418#0 ACAGTGTATGAATTGAATACCCACTTTGATGGCATTTTCACTGGACGGGGATATGTGCCA 702
consensus_12418#1 ------------------------------------------------------------
consensus_12418#0 CCCCCCAACAGAACCATAATTAACTGCTAAAATATTTACACCATCCATGTGGATAACAAT 762
consensus_12418#1 ------------------------------------------------------------
consensus_12418#0 ATGTTCATCCAAACTTTCACGTGGTATGCATCTAGCTTTGATTGAGGAAACAACATAGTC 822
consensus_12418#1 ------------------------------------------------------------
consensus_12418#0 TTTTCTTGCAGGATCCAACACATTAGACAGCAACCTAATTGAATAAAAACCATCTTCATC 882
consensus_12418#1 ------------------------------------------------------------
consensus_12418#0 CAGCAATTTTTTAAATGCATCCTTTTCATCACCAGTCAACTCGTTCCTTGTGAACCGAAG 942
consensus_12418#1 ------------------------------------------------------------
consensus_12418#0 CTTAGTGAGAGTCTGGGATCCGTGCGCGGAGGACTTGAGGCGGGCGGAGAAGGACCCCGC 1002
consensus_12418#1 ------------------------------------------------------------
consensus_12418#0 GGGGACGAACCCGGCGCCGAGGTCGTGCTCGAGCGAGNACTGCACGGCGCTGGACTCCGC 1062
consensus_12418#1 ------------------------------------------------------------
consensus_12418#0 CGCCGCNGNGCTGCTGTCCCCGGGCCGCCGGCGGGAGGAGGAGACCGCCGCCGCAGCGGG 1122
consensus_12418#1 ------------------------------------------------------------
consensus_12418#0 CGCGGGCGGCCCTGGCGTGGGGCGTGCGCCCGCGCCCTCGAACTCGTCGTCGTCGTGGAG 1182
consensus_12418#1 ------------------------------------------------------------
consensus_12418#0 GAGCAGCTCGTCGGACTGGAAGGCGGAGGCGGCGGCGAGGGAGAGGGAGAGGGCGAGGAG 1242
consensus_12418#1 ------------------------------------------------------------
consensus_12418#0 GAGGAGGAGGGGGAGGAGGCGAGGGCGGCGCGGCGCGGCCATGGCTTCTGGTCGGGGGAG 1302
consensus_12418#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||