cluster # 12421

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Oryza sativa
cluster # 12421 cluster # 12421 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12421#0 length = 409 sequences # 6
consensus_12421#1 length = 376 sequences # 1

consensus_12421#2 length = 352 sequences # 2
consensus_12421#3 length = 316 sequences # 1

consensusID : consensus_12421#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 409
fasta sequence

                              [GATGAAGNAGCCCCGCGGAGGCNGAGGATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTTATGGATACCCCAGATTCCGCCGTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGA---TATGTGCAAATTCAGGCAGCAGCATTATGTACTATTAACTTCGTTTATGTGGAAGTGCGCACTATTTTGGGTTTTGGCTGCATTTTTGGTTTCCATCTTTTCAATTCAATTATAGCTTATTGCTTCAAAAAAAAA]

[+] EMBL AU032260             [GATGAAGNAGCCCCGCGGAGGCNGAGGATTCGGTGNTCATCCTTATATGAGNCCATATGGAGCACCATTTTANAATCCCTATGGTTATGGATACCCCAGATTCCGCCGTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATNACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGA   TATGTGCAAATTCAGGCANCAGNATTATGTNCTnnnnaa                                                                                                ]
[+] EMBL AU181478             [                          GATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTTATGGATACCCCAGATTCCGCCGTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGA   TATGTGCAAATTCAGGCAGCAGCATTATGNACTATTAACTTCGTTTATGTGGAAGTGCGCACTATTTTGGGTTTTGGCTGCATTTTTGGTTTCCATCTTTTCAATTCAATTATAGCTTATTGCTTCAAAAAAAAA]
[+] EMBL AA752982             [                          GATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTTATGGATACCCCAGATTCCGCCGTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGA   TATGTGCAAATTCAGGCAGCAGCATTATGTACTATTAACTTCGTTTATGTGGAAGTGCGCACTATTTTGGGT                                                               ]
[+] EMBL CB682238             [                          GATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTTATGGATACCCCAGATTCCGCCGTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGA   TATGTGCAAATTCAGGCAGCAGCATTATGTACTATTAACTTCGTTTATGTGGAAGTGCGCACTA                                                                       ]
[+] EMBL CB679203             [                          GATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTTATGGATACCCCAGATTCCGCCGTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGA   TATGTGCAAATTCAGGCAGCAGCATTATGTACTATTAACTTCGTTTATGTGGAAGTGCGCACTA                                                                       ]
[-] EMBL BI306583             [                           ATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTTATGGATACCCCAAATTCCGCCGTCCACGCAGGCCATACTTTTGAAGCTGTTTTCGTGGAGTTTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTC   GTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATTACTTTTTTCACAGGGTGTTTTTTGTTGTTTAAAGATGTTATGTGCAAATTCAGGCAGCAACATTATGTACTATTAACTTCGTTTATGTGGAAGTGCGCACTATTTTGGGT                                                               ]




>consensus_12421#0
GATGAAGNAGCCCCGCGGAGGCNGAGGATTCGGTGGTCATCCTTATATGAGGCCATATGG
AGCACCATTTTACAATCCCTATGGTTATGGATACCCCAGATTCCGCCGTCCACGCAGGCC
ATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATGACATTAGTCCAATAGCCCAAA
GAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCA
CTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGCATT
ATGTACTATTAACTTCGTTTATGTGGAAGTGCGCACTATTTTGGGTTTTGGCTGCATTTT
TGGTTTCCATCTTTTCAATTCAATTATAGCTTATTGCTTCAAAAAAAAA

consensusID : consensus_12421#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [TGCATGGTCGCCCAAATCAAGGGGGCGCCAAAGAGGGACTAACGTCCCTTGGAATAAACCAGCCCCCCGGAAGCCAGAAGAATCGGGNGTCCTCCCTTATATAGGGCCATAATGAGCACCCATTTTTCCAATCCCCTATGGGTTATGGATCCCCCAGATTNCGNCCGTCCACGCAGGCCCATACCTTTTAAAGCTGTNTTCGTGGGAGTCTTCAGCCCATGACATTAGTNCAATAGCCCAAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGCATTATGTACTAAAAAA]

[+] EMBL AU173203             [TGCATGGTCGCCCAAATCAAGGGGGCGCCAAAGAGGGACTAACGTCCCTTGGAATAAACCAGCCCCCCGGAAGCCAGAAGAATCGGGNGTCCTCCCTTATATAGGGCCATAATGAGCACCCATTTTTCCAATCCCCTATGGGTTATGGATCCCCCAGATTNCGNCCGTCCACGCAGGCCCATACCTTTTAAAGCTGTNTTCGTGGGAGTCTTCAGCCCATGACATTAGTNCAATAGCCCAAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGCATTATGTACTAAAAAA]




>consensus_12421#1
TGCATGGTCGCCCAAATCAAGGGGGCGCCAAAGAGGGACTAACGTCCCTTGGAATAAACC
AGCCCCCCGGAAGCCAGAAGAATCGGGNGTCCTCCCTTATATAGGGCCATAATGAGCACC
CATTTTTCCAATCCCCTATGGGTTATGGATCCCCCAGATTNCGNCCGTCCACGCAGGCCC
ATACCTTTTAAAGCTGTNTTCGTGGGAGTCTTCAGCCCATGACATTAGTNCAATAGCCCA
AAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGA
TCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGC
ATTATGTACTAAAAAA

consensusID : consensus_12421#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 352
fasta sequence

                              [GATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTTATGGATACCCCAGATTCCGCCGTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGCATTATGTACTATTAA-TTCGTTTATGTGGAAGTGCGCACTATTTTGGGTTTTGGCTGCAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU029362             [GATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTTATGGATACCCCAGATTCCGCCGTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGCATTATGTACTATTAA TTCGTTTATGTGGAAGTGCGCACTATTTTGGGTTTTGGCTGCAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF310082             [ ATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTTATGGATACCCCAGATTCCGCCGTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGCATTATGTACTATTAACTTCGTTTATGTGGAAGTGCGCACTATTTTGGGTTTTGGCTGCAAAAAA                  ]




>consensus_12421#2
GATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTT
ATGGATACCCCAGATTCCGCCGTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAG
TCTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCG
ATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTG
TTTAAAGATATGTGCAAATTCAGGCAGCAGCATTATGTACTATTAATTCGTTTATGTGGA
AGTGCGCACTATTTTGGGTTTTGGCTGCAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12421#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence

                              [GATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTTATGGATACCCCAGATTCCGCCGTTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGCATTATGTACTATTAACCTCGTTTGGCCATCGAGTGGTGTGCCGA]

[+] EMBL AU225443             [GATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTTATGGATACCCCAGATTCCGCCGTTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGCATTATGTACTATTAACCTCGTTTGGCCATCGAGTGGTGTGCCGA]




>consensus_12421#3
GATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATGGTT
ATGGATACCCCAGATTCCGCCGTTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGA
GTCTTCAGCACATGACATTAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTC
GATACTTCATAGTTAGCAACTATAAAGTTCGATCACTTTCTTCACAGGGTGTTTTTTGTT
GTTTAAAGATATGTGCAAATTCAGGCAGCAGCATTATGTACTATTAACCTCGTTTGGCCA
TCGAGTGGTGTGCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12421#0      ----------------------------------------------------GATGAAGN 8
consensus_12421#2      ------------------------------------------------------------
consensus_12421#3      ------------------------------------------------------------
consensus_12421#1      TGCATGGTCGCCCAAATCAAGGGGGCGCCAAAGAGGGACTAACGTCCCTTGGAATAAACC 60
                                                                                   

consensus_12421#0      AGCCCCGCGGAGGCN-GAGGATTCGGTGGTCATCC-TTATATGAGGCCATATGGAGCACC 66
consensus_12421#2      -------------------GATTCGGTGGTCATCC-TTATATGAGGCCATATGGAGCACC 40
consensus_12421#3      -------------------GATTCGGTGGTCATCC-TTATATGAGGCCATATGGAGCACC 40
consensus_12421#1      AGCCCCCCGGAAGCCAGAAGAATCGGGNGTCCTCCCTTATATAGGGCCATAATGAGCACC 120
                                          ** ****  *** *** ******  *******  *******

consensus_12421#0      A--TTTTACAATCCC-TATGG-TTATGGATACCCCAGATTCCGCCGT-CCACGCAGGCC- 120
consensus_12421#2      A--TTTTACAATCCC-TATGG-TTATGGATACCCCAGATTCCGCCGT-CCACGCAGGCC- 94
consensus_12421#3      A--TTTTACAATCCC-TATGG-TTATGGATACCCCAGATTCCGCCGTTCCACGCAGGCC- 95
consensus_12421#1      CATTTTTCCAATCCCCTATGGGTTATGGATCCCCCAGATTNCGNCCGTCCACGCAGGCCC 180
                          **** ******* ***** ******** ********* ** *   *********** 

consensus_12421#0      ATAC-TTTTGAAGCTGTCTTCGTGG-AGTCTTCAGCACATGACATTAGTCCAATAGCCCA 178
consensus_12421#2      ATAC-TTTTGAAGCTGTCTTCGTGG-AGTCTTCAGCACATGACATTAGTCCAATAGCCCA 152
consensus_12421#3      ATAC-TTTTGAAGCTGTCTTCGTGG-AGTCTTCAGCACATGACATTAGTCCAATAGCCCA 153
consensus_12421#1      ATACCTTTTAAAGCTGTNTTCGTGGGAGTCTTCAGCCCATGACATTAGTNCAATAGCCCA 240
                       **** **** ******* ******* ********** ************ **********

consensus_12421#0      AA-GAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGA 237
consensus_12421#2      AA-GAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGA 211
consensus_12421#3      AA-GAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGA 212
consensus_12421#1      AAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGA 300
                       ** *********************************************************

consensus_12421#0      TCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGC 297
consensus_12421#2      TCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGC 271
consensus_12421#3      TCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGC 272
consensus_12421#1      TCACTTTCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGC 360
                       ************************************************************

consensus_12421#0      ATTATGTACTATTAACTTCGTTTATGTGGAAGTGCGCACTATTTTGGGTTTTGGCTGCAT 357
consensus_12421#2      ATTATGTACTATTAA-TTCGTTTATGTGGAAGTGCGCACTATTTTGGGTTTTGGCTGCAA 330
consensus_12421#3      ATTATGTACTATTAACCTCGTTTG---GCCATCGAGTGGTGTGCCGA------------- 316
consensus_12421#1      ATTATGTACTAAAAAA-------------------------------------------- 376
                       ***********  **                                             

consensus_12421#0      TTTTGGTTTCCATCTTTTCAATTCAATTATAGCTTATTGCTTCAAAAAAAAA 409
consensus_12421#2      AAAAAAAAAAAAAAAAAAAAAA------------------------------ 352
consensus_12421#3      ----------------------------------------------------
consensus_12421#1      ----------------------------------------------------