cluster # 12427

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Oryza sativa
cluster # 12427 cluster # 12427 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12427#0 length = 866 sequences # 7
consensus_12427#1 length = 693 sequences # 1

consensus_12427#2 length = 391 sequences # 1
consensus_12427#3 length = 241 sequences # 1

consensusID : consensus_12427#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 866
fasta sequence

                              [CCAGCGCGAGCCACATGGCGTCCACCACCACCACCACGGCGGCGGCCGCGGCCCGCTTCACCTGCCTCGCGCCGGCCACGCGCCCCGCCTCCGCCTCCGCCTCCGCGGGCCGCTTCCTCCTCCCGGCGCGGCAGTGGGGGGCGGCGACGACGCACGGGAGCGCGGCGGTGCCCGTCGTCGCGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTCGCCTACG-CCACCGCCGCCACCGGGAAGAGCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTCACCGGTTATATATATGTCCACGTATATAGTTGTAACAAAAAA]

[+] EMBL CB666846             [CCAGCGCGAGCCACATGGCGTCCACCACCACCACCACGGCGGCGGCCGCGGCCCGCTTCACCTGCCTCGCGCCGGCCACGCGCCCCGCCTCCGCCTCCGCCTCCGCGGGCCGCTTCCTCCTCCCGGCGCGGCAGTGGGGGGCGGCGACGACGCACGGGAGCGCGGCGGTGCCCGTCGTCGCGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTCGCCTACG CCACCGCCGCCACCGGGAAGAGCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAAGTTTACTTGATTAT                                                                        ]
[+] EMBL CB680780             [                                                                                                                 TTCCTCCTCCCGGCGCGGCAGTGGGGGGCGGCGACGACGCACGGGAGCGCGGAGGTGCCCGTCGTCGCGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTCGCCTACG CCACCGCCGCCACCGGGAAGAGCGTCCACAACTTCACCGCCCAGGACATTGATGGAAAAGATGTTGCGCTTAACAAGCTCAAGGGAACGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB666847             [                                                                                                                                               GCGACGACGCACGGGAGCGCGGCGGTGCCCGTCGTCGCGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTCGCCTACG CCACCGCCGCCACCGGGAAGAGCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTC                                          ]
[-] EMBL CB663116             [                                                                                                                                                                        TGCCCGTCGTCGCGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTTGCCTACGCCCACCGCCGCCACCGGGAAGAGCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTC                                          ]
[-] EMBL CB680781             [                                                                                                                                                                                                            CAGGGGTCGCCTACG CCACCGCCGCCACCGGGAAGAGCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTC                                          ]
[+] EMBL BP184751             [                                                                                                                                                                                                                                                          ACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGGGTAAAATTACT                                           ]
[-] EMBL CF299139             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTCACCGGTTATATATATGTCCACGTATATAGTTGTAACAAAAAA]




>consensus_12427#0
CCAGCGCGAGCCACATGGCGTCCACCACCACCACCACGGCGGCGGCCGCGGCCCGCTTCA
CCTGCCTCGCGCCGGCCACGCGCCCCGCCTCCGCCTCCGCCTCCGCGGGCCGCTTCCTCC
TCCCGGCGCGGCAGTGGGGGGCGGCGACGACGCACGGGAGCGCGGCGGTGCCCGTCGTCG
CGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTCGCCTACGCCACCGCCGCCACCGGGAAGA
GCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCA
AGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATT
ACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCAT
TTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTG
CTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTA
ACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTG
TGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACC
CACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAG
TACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAG
TTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTCACCGGTTATATATATG
TCCACGTATATAGTTGTAACAAAAAA

consensusID : consensus_12427#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [AAGATGTGCCGCTTATCAAGTCAAAGGCAGGGGCGCTTCTAATTGTTAATGTTGCATCTCAGGGTGGGGTGACAACAGCAAATTACACGGAACTATCTCATCTCTCTGAGAAGTCCGACACTCAAGGGTTTAAGATTCTCGCATTTCCTTGCAATCAGTTTGGTGCACAAGAAAGTGGGTCGAACCCGCAGATTAAGCAGTTTGCTCGGACAAGGTTTAAAGCTTAATTTCCCATTTTTGACAAGGTTGAGGTCATCGGGCCTAACCCAGGCCCTATTTATAAGTTTTTTAAGTCGAGTGCTGGAGTATTTTTGGGTGATCTTGTTAAATGGAATTTTGACAAGTTCTTGGTGGACAAAACTGGAAAAGTTTTTGAAAAATACCCACCTACAAATTTGCCCTTTCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTAATAGAGGTCCCCCTTTAGCTAAGCTTTTCTGTACATAAGCCTTGCCTAAAAACAAGAGTTTTACTTGGGTAAAAAACATTTTTTTCGTGTGTAAAATAACTCATAGGTTAAATATATGGGCCCGTGTATAGTTGTAACATGAGACTTATAGGATATCAAATTTGTAGGCTTATTTGGCCCCTGTAACTGTTTTTGTTGCAGCATCCTTTTTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760010             [AAGATGTGCCGCTTATCAAGTCAAAGGCAGGGGCGCTTCTAATTGTTAATGTTGCATCTCAGGGTGGGGTGACAACAGCAAATTACACGGAACTATCTCATCTCTCTGAGAAGTCCGACACTCAAGGGTTTAAGATTCTCGCATTTCCTTGCAATCAGTTTGGTGCACAAGAAAGTGGGTCGAACCCGCAGATTAAGCAGTTTGCTCGGACAAGGTTTAAAGCTTAATTTCCCATTTTTGACAAGGTTGAGGTCATCGGGCCTAACCCAGGCCCTATTTATAAGTTTTTTAAGTCGAGTGCTGGAGTATTTTTGGGTGATCTTGTTAAATGGAATTTTGACAAGTTCTTGGTGGACAAAACTGGAAAAGTTTTTGAAAAATACCCACCTACAAATTTGCCCTTTCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTAATAGAGGTCCCCCTTTAGCTAAGCTTTTCTGTACATAAGCCTTGCCTAAAAACAAGAGTTTTACTTGGGTAAAAAACATTTTTTTCGTGTGTAAAATAACTCATAGGTTAAATATATGGGCCCGTGTATAGTTGTAACATGAGACTTATAGGATATCAAATTTGTAGGCTTATTTGGCCCCTGTAACTGTTTTTGTTGCAGCATCCTTTTTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12427#1
AAGATGTGCCGCTTATCAAGTCAAAGGCAGGGGCGCTTCTAATTGTTAATGTTGCATCTC
AGGGTGGGGTGACAACAGCAAATTACACGGAACTATCTCATCTCTCTGAGAAGTCCGACA
CTCAAGGGTTTAAGATTCTCGCATTTCCTTGCAATCAGTTTGGTGCACAAGAAAGTGGGT
CGAACCCGCAGATTAAGCAGTTTGCTCGGACAAGGTTTAAAGCTTAATTTCCCATTTTTG
ACAAGGTTGAGGTCATCGGGCCTAACCCAGGCCCTATTTATAAGTTTTTTAAGTCGAGTG
CTGGAGTATTTTTGGGTGATCTTGTTAAATGGAATTTTGACAAGTTCTTGGTGGACAAAA
CTGGAAAAGTTTTTGAAAAATACCCACCTACAAATTTGCCCTTTCAGATTGAGAAGGACA
TCCAGAAACTCCTTGCGGCATAAGTAATAGAGGTCCCCCTTTAGCTAAGCTTTTCTGTAC
ATAAGCCTTGCCTAAAAACAAGAGTTTTACTTGGGTAAAAAACATTTTTTTCGTGTGTAA
AATAACTCATAGGTTAAATATATGGGCCCGTGTATAGTTGTAACATGAGACTTATAGGAT
ATCAAATTTGTAGGCTTATTTGGCCCCTGTAACTGTTTTTGTTGCAGCATCCTTTTTGTT
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12427#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [TCTTATTATTGAATCGATTCACTATTTTACTTTCGGCCAATTTTCATGCTATATTTTAGTGTCATGAAGATAGCTTTGCTAAATGTACTAATTACCTTTGAATTATTTCAAGTGCTTTCCATATAAAAGTTTATGCATTTGGTTGAGATGCACATCCCTGAACCCTCTTTTGGTTATAATATTCCAAATCACTTGTGCCGCATTATTCTGTTTAATGCATTGTGCCATTCCCCGTTGCTCACAGTCTTCTTTATATACATCTCTTGCAGRAGGACATCCAGAAACTCCTTGCGGCATAAGBACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATKAGAGTTTTACTTGATTAAAAAAATMTATATATWAT]

[+] EMBL AA754320             [TCTTATTATTGAATCGATTCACTATTTTACTTTCGGCCAATTTTCATGCTATATTTTAGTGTCATGAAGATAGCTTTGCTAAATGTACTAATTACCTTTGAATTATTTCAAGTGCTTTCCATATAAAAGTTTATGCATTTGGTTGAGATGCACATCCCTGAACCCTCTTTTGGTTATAATATTCCAAATCACTTGTGCCGCATTATTCTGTTTAATGCATTGTGCCATTCCCCGTTGCTCACAGTCTTCTTTATATACATCTCTTGCAGRAGGACATCCAGAAACTCCTTGCGGCATAAGBACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATKAGAGTTTTACTTGATTAAAAAAATMTATATATWAT]




>consensus_12427#2
TCTTATTATTGAATCGATTCACTATTTTACTTTCGGCCAATTTTCATGCTATATTTTAGT
GTCATGAAGATAGCTTTGCTAAATGTACTAATTACCTTTGAATTATTTCAAGTGCTTTCC
ATATAAAAGTTTATGCATTTGGTTGAGATGCACATCCCTGAACCCTCTTTTGGTTATAAT
ATTCCAAATCACTTGTGCCGCATTATTCTGTTTAATGCATTGTGCCATTCCCCGTTGCTC
ACAGTCTTCTTTATATACATCTCTTGCAGRAGGACATCCAGAAACTCCTTGCGGCATAAG
BACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATKAGAG
TTTTACTTGATTAAAAAAATMTATATATWAT

consensusID : consensus_12427#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [GCCGAATTCGGCACNAGGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTNCACCATTCCAGATTGAAAAAGACATCCAGAAACTCCTTGCGGCATAAGTACTAAANGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACT]

[+] EMBL AA753209             [GCCGAATTCGGCACNAGGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTNCACCATTCCAGATTGAAAAAGACATCCAGAAACTCCTTGCGGCATAAGTACTAAANGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACT]




>consensus_12427#3
GCCGAATTCGGCACNAGGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAA
AAGTTGTTGAGAGATACCCACCTACAACTNCACCATTCCAGATTGAAAAAGACATCCAGA
AACTCCTTGCGGCATAAGTACTAAANGTCACACTTCAGCTAAGCTCTTCTGTACATATGC
CTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTAC
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12427#0      CCAGCGCGAGCCACATGGCGTCCACCACCACCACCACGGCGGCGGCCGCGGCCCGCTTCA 60
consensus_12427#1      ------------------------------------------------------------
consensus_12427#3      ------------------------------------------------------------
consensus_12427#2      ------------------------------------------------------------
                                                                                   

consensus_12427#0      CCTGCCTCGCGCCGGCCACGCGCCCCGCCTCCGCCTCCGCCTCCGCGGGCCGCTTCCTCC 120
consensus_12427#1      ------------------------------------------------------------
consensus_12427#3      ------------------------------------------------------------
consensus_12427#2      ------------------------------------------------------------
                                                                                   

consensus_12427#0      TCCCGGCGCGGCAGTGGGGGGCGGCGACGACGCACGGGAGCGCGGCGGTGCCCGTCGTCG 180
consensus_12427#1      ------------------------------------------------------------
consensus_12427#3      ------------------------------------------------------------
consensus_12427#2      ------------------------------------------------------------
                                                                                   

consensus_12427#0      CGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTCGCCTACGCCACCGCCGCCACCGGGAAGA 240
consensus_12427#1      ------------------------------------------------------------
consensus_12427#3      ------------------------------------------------------------
consensus_12427#2      ------------------------------------------------------------
                                                                                   

consensus_12427#0      GCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCA 300
consensus_12427#1      ------------------------------------AAGATGTGCCGCTTATCAAGTCAA 24
consensus_12427#3      ------------------------------------------------------------
consensus_12427#2      ------------------------------------------------------------
                                                                                   

consensus_12427#0      AGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATT 360
consensus_12427#1      AGGCAGGGGCGCTTCTAATTGTTAATGTTGCATCTCAGGGTGGGGTGACAACAGCAAATT 84
consensus_12427#3      ------------------------------------------------------------
consensus_12427#2      ------------------------------------------------------------
                                                                                   

consensus_12427#0      ACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCAT 420
consensus_12427#1      ACACGGAACTATCTCATCTCTCTGAGAAGTCCGACACTCAAGGGTTTAAGATTCTCGCAT 144
consensus_12427#3      ------------------------------------------------------------
consensus_12427#2      ------------------------------------------------------------
                                                                                   

consensus_12427#0      TTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTG 480
consensus_12427#1      TTCCTTGCAATCAGTTTGGTGCACAAGAAAGTGGGTCGAACCCGCAGATTAAGCAGTTTG 204
consensus_12427#3      ------------------------------------------------------------
consensus_12427#2      --TCTTATTATTGAATCGATTCACTA---TTTTACTTTCGGCCAATTTTCATGCTATATT 55
                                                                                   

consensus_12427#0      CTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTA 540
consensus_12427#1      CTCGGACAAGGTTTAAAGCTTAATTTCCCATTTTTGACAAGGTTGAGGTCATCGGGCCTA 264
consensus_12427#3      ------------------------------------------------------------
consensus_12427#2      TTAGTGTCA----TGAAGATAGCTTTGCTAAATGTACTAA--TTACCTTTGAATTATTTC 109
                                                                                   

consensus_12427#0      ACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTG-GAGGATTTTTGGGTGATCTT 599
consensus_12427#1      ACCCAGGCCCTATTTATAAGTTTTTTAAGTCGAGTGCTG-GAGTATTTTTGGGTGATCTT 323
consensus_12427#3      -----------------------------------GCCG-AA------TTCGGC-ACNAG 17
consensus_12427#2      AAGTGCTTTCCATATAAAAGTTTATGCATTTGGTTGAGATGCACATCCCTGAACCCTCTT 169
                                                          *             *          

consensus_12427#0      GTGAA-ATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATA 658
consensus_12427#1      GTTAA-ATGGAATTTTGACAAGTTCTTGGTGGACAAAACTGGAAAAGTTTTTGAAAAATA 382
consensus_12427#3      GTGAA-ATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATA 76
consensus_12427#2      TTGGTTATAATATTCCAAATCACTTGTGCCGCATTATTCTGTTTAATGCATTGTGCCATT 229
                        *    **   ***   *     *  **  * *  *  ***   **    ***    ** 

consensus_12427#0      CCC----ACCTACAACTTCACCATTCCAGATTG-----AGAAGGACATCCAGAAACTCCT 709
consensus_12427#1      CCC----ACCTACAAATTTGCCCTTTCAGATTG-----AGAAGGACATCCAGAAACTCCT 433
consensus_12427#3      CCC----ACCTACAACTNCACCATTCCAGATTG-----AAAAAGACATCCAGAAACTCCT 127
consensus_12427#2      CCCCGTTGCTCACAGTCTTCTTTATATACATCTCTTGCAGRAGGACATCCAGAAACTCCT 289
                       ***     *  ***          *  * **       *  * *****************

consensus_12427#0      TGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCT 769
consensus_12427#1      TGCGGCATAAGTAATAGAGGTCCCCCTTTAGCTAAGCTTTTCTGTACATAAGCCTTGCCT 493
consensus_12427#3      TGCGGCATAAGTACTAAANGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCT 187
consensus_12427#2      TGCGGCATAAGBACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCT 349
                       *********** * ** * *** * *** ********* *********** *********

consensus_12427#0      CATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTCACCGG 829
consensus_12427#1      AAAAACAAGAGTTTTACTTGGGTAAAAAACATTTTTTTCGTGTGTAAAATAACTCATAGG 553
consensus_12427#3      CATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACT------ 241
consensus_12427#2      CATAATKAGAGTTTTACTTGATTAAAAAA-ATMTATATATWAT----------------- 391
                        * **  *************  ** * *  ** * * *    *                 

consensus_12427#0      TTATATATATGTCCACGTATATAGTTGTAACAAAAAA----------------------- 866
consensus_12427#1      TTAAATATATGGGCCCGTGTATAGTTGTAACATGAGACTTATAGGATATCAAATTTGTAG 613
consensus_12427#3      ------------------------------------------------------------
consensus_12427#2      ------------------------------------------------------------
                                                                                   

consensus_12427#0      ------------------------------------------------------------
consensus_12427#1      GCTTATTTGGCCCCTGTAACTGTTTTTGTTGCAGCATCCTTTTTGTTCCAAAAAAAAAAA 673
consensus_12427#3      ------------------------------------------------------------
consensus_12427#2      ------------------------------------------------------------
                                                                                   

consensus_12427#0      --------------------
consensus_12427#1      AAAAAAAAAAAAAAAAAAAA 693
consensus_12427#3      --------------------
consensus_12427#2      --------------------