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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1953 fasta sequence
[CGCGTGGGTTTTTTTTTAAATCGGATGTAGATCGGATAAGTAATTTGAGAGAAAACTTGTTTGAAGAGGAAAGGACGTACATGTATATATTAAAAAGCATGCATGTAGTACCATGTACTAGCTAGATTTCTCCATGTTTAGACGTCGCTAGATAAGGCAAAATTGAGAGGCCTCTCCAAATAGATTTTATATAAAAAAAACACTAGGCTGAAATTAAGTGCGCTGAGCCGCTGAGTGATGGACTAGTGAGGAGACTGCAGCCTCTCATCGCAGTCGCGGAGTCCACGCTCTTATCCCGAAATGAGTCCGAAGAAGCTGGCTGTCATCTACCTGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAGCTGCTCGTGCCGCACGGCATCGATGTCACCATCGTCCTCGGCGGCCAGGACGACGGGGGCGCCGCTGCTACCG-GTCTTTCCTAGCGGACGCCGCCGCCACCAACCCAGAGCTCTCCTTCCACCGCCTCCCGCAACCCACGCTCCCCTGCAACGTGCCCGCTGATGATTACGTGTCTCGCTCGGGTCTTCGAGTTTGCACGGGCTTCCGGCCCCGATCTATGTGACTTCCTCCGGTCCACCTCCCCGGCCGTCCTCATCATCGACTTCTTCTGCTACAGCGCCCTCGACGTTGGCGCCGAGCTCCGCATCCCGACGTACTTCTTCCTCACCACTTGCATCGCTAGCCTCGCTTTTCTGCTGTACCTTCCAGTCATCCAAGAGGAGAATACCATGAGCTTCAGAGATCTCAGTGGTGACCTCGTGCACGCGCCGGGTATCCCACCGATACCGGCAGATCACCTCCCCATGTCTCAGTTAGACCGCGACAGCGTGAGCAGCAGGCACTTCCTCGCCTTGTCCGAACAGGTGTGCAACTCGCACGGTGTTATGGTAAATAGCTGCCACTCCCTCGAGCGGCGCGCGGCCGACGCCATCGTCGCCGGTCTCTGCACGTTCCCAGGGCGTCGAACGCCGCCGCTGCACTGCATAGGGCCACTGATAAAGCCGCGGGAGGAGGACAGTACAGAGCGCCACGAGTGCCTCGCCTGGCTTGACGCGCAGCCCAAGGCCAGCGTGTTGTTCCTCTGTTTCGGCAGCTTGGGCGTGTTCAGCGTGGAGCAGATCAAGCAGGTGGCCGTCGGCCTAGAGACGAGCGGCCACCGGTTCCTGTGGGTGGTGCGTCCCCCGCCTGGCTTGGAGCACGTAACCGGGCCTGACCTCGACGCGCTCATCTTCCCGGAAGGCTTCCTACGCCGGACCAAGGGAAGGGGGCTCGAGGTCATATCGTGTTCACCGCAACGCGAGGTGCTGGAGCACGGTGCGGTGGGC-GGGTTCGTGACACA-CTGTGGATGGAACTCGGTGTTGGA-GCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTGTACGCGGA-G-CA--GAGGATGAACA-AGGTGTTCTTGGTGG-AAGAGATGCGCTTGG-CCGTGGGGGTGGAAGGCTATGACA-AAGGAATCGTTACG-GCGGAGGAGATTCA-GGAGAAGGCGAGG-TGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACT-T-TGGCGGCCATGCGAGAGGTGA-AAGAGGCGCCAAGTGACAAAGGTGAGTCCAA-AA-TGACG-TTGTTAGAACTCGTAAG-CCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATG-TTAACGGG-CTAGCCTTCTGCACCG-TTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCATAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAAAAAATAACCGGGTAAGCTTGCAAAAGGTTTCTGCTTAC]
[-] EMBL BI807672 [CGCGTGGGTTTTTTTTTAAATCGGATGTAGATCGGATAAGTAATTTGAGAGAAAACTTGTTTGAAGAGGAAAGGACGTACATGTATATATTAAAAAGCATGCATGTAGTACCATGTACTAGCTAGATTTCTCCATGTTTAGACGTCGCTAGATAAGGCAAAATTGAGAGGCCTCTCCAAATAGATTTTATATAAAAAAAACACTAGGCTGAAATTAAGTGCGCTGAGCCGCTGAGTGATGGACTAGTGAGGAGACTGCAGCCTCTCATCGCAGTCGCGGAGTCCACGCTCTTATCCCGAAATGAGTCCGAAGAAGCTGGCTGTCATCTACCTGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAGCTGCTCGTGCCGCACGGCATCGATGTCACCATCGTCCTCGGCGGCCAGGACGACGGGGGCGCCGCTGCTACCG GTCTTTCCTAGCGGACGCCG ]
[+] EMBL AK108266 [ GCTCTTATCCCGAAATGAGTCCGAAGAAGCTGGCTGACATCTACCCGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAGCTGCTCGTGCCGCACGGCATCGATGTCACCATCGTCCTCGGCGGCCAGGACGACGGGGGCGCCGCTGCTACCGCGTCTTTCCTAGCGGACGCCGCCGCCACCAACCCAGAGCTCTCCTTCCACCGCCTCCCGCAACCCACGCTCCCCTGCAACGTGCCCGCTGATGATTACGTGTCTCGCTCGGGTCTTCGAGTTTGCACGGGCTTCCGGCCCCGATCTATGTGACTTCCTCCGGTCCACCTCCCCGGCCGTCCTCATCATCGACTTCTTCTGCTACAGCGCCCTCGACGTTGGCGCCGAGCTCCGCATCCCGACGTACTTCTTCCTCACCACTTGCATCGCTAGCCTCGCTTTTCTGCTGTACCTTCCAGTCATCCAAGAGGAGAATACCATGAGCTTCAGAGATCTCAGTGGTGACCTCGTGCACGCGCCGGGTATCCCACCGATACCGGCAGATCACCTCCCCATGTCTCAGTTAGACCGCGACAGCGTGAGCAGCAGGCACTTCCTCGCCTTGTCCGAACAGGTGTGCAACTCGCACGGTGTTATGGTAAATAGCTGCCACTCCCTCGAGCGGCGCGCGGCCGACGCCATCGTCGCCGGTCTCTGCACGTTCCCAGGGCGTCGAACGCCGCCGCTGCACTGCATAGGGCCACTGATAAAGCCGCGGGAGGAGGACAGTACAGAGCGCCACGAGTGCCTCGCCTGGCTTGACGCGCAGCCCAAGGCCAGCGTGTTGTTCCTCTGTTTCGGCAGCTTGGGCGTGTTCAGCGTGGAGCAGATCAAGCAGGTGGCCGTCGGCCTAGAGACGAGCGGCCACCGGTTCCTGTGGGTGGTGCGTCCCCCGCCTGGCTTGGAGCACGTAACCGGGCCTGACCTCGACGCGCTCATCTTCCCGGAAGGCTTCCTACGCCGGACCAAGGGAAGGGGGCTCGAGGTCATATCGTGTTCACCGCAACGCGAGGTGCTGGAGCACGGTGCGGTGGGC GGGTTCGTGTCACA CTGTGGATGGAACTCGGTGTTGGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTGTACGCGGA G CA GAGGATGAACA AGGTGTTCTTGGTGG AAGAGATGCGTTTGG CCGTGGGGGTGGAAGGCTATGACA AAGGAATCGTTACG GCGGAGGAGATTCA GGAGAAGGCGAGG TGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACT T TGGCGGCCATGCGAGAGGTGA AAGAGGCGCCAAGTGACAAAGGTGAGTCCAA AA TGACG TTGTTAGAACTCGTAAG CCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATG TTAACGGG CTAGCCTTCTGCACCG TTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCAGAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAACATTTAACCGGGTAAGCTTGCAAAAGGTTTCTGCTTAC]
[+] EMBL BI812886 [ GCTTCCTAC CC GACCAA GGAAGGGGCCTC TGTCCAATCGTTGGCACC C AC CGA GT CTGGAGCCCGTTCCGGT GGC GGTTCGTGACACA CTGTGGATGGAACTC GTTTTGGA GCCGTCACA CGGGGGTGCCCATGCTGGCAT GCC TTGTACGCGGA G CA GAGGATGAACA AGGTGTTCTTGGTGG AAGAGATGCGCTTGG CCGTGGGGGTGGAAGGCTATGACA AAGGAATCGTTACG GCGGAGGAGATTCA GGAGAAGGCGAGG TGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACT T TGGCGGCCATGCGAGAGGTGA AAGAGGCGCCAAGTGACAAAGGTGAGTCC A AA TGACG TTGTTAGAACTCGTAAG CCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATG TTAACGGG CTAGCCTTCTGCACCG TTTGGTCC AAATAAACATACCAGGTCATACTATAGTATATTTCCGCCATAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAAAAAA ]
[+] EMBL BQ906313 [ GCGGTGGNCGGGGTTCGTGACACACCTGTGGATGGAACTCGGTGTTGGA GCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTGTACGCGGA G CA GAGGATGAACA AGGTGTTCTTGGTGG AAGAGATGCGCTTGGCCCGTGGGGGTGGAAGGCTATGACA AAGGAATCGTTACG GCGGAGGAGATTCA GGAGAAGGCGAGG TGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACT T TGGCGGCCATGCGAGAGGTGA AAGAGGCGCCAAGTGACAAAGGTGAGTCCAA AA TGACG TTGTTAGAACTCGTAAG CCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATG TTAACGGG CTAGCCTTCTGCACCG TTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCAGAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACAC ATATTTTCAACATTTAAaaa ]
[+] EMBL BI812989 [ ACGCGGACGCCACTGAGGATGAACATAGGTGTTCTTGGTGGTAAGAGATGCGCTT G CCGTGGGGGTGGAAGGCTATGACACAAGGAATCGTTACG GCGGAGGAGATTCATGGAGAAGGCGAGG TGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACT T TGGCGGCCATGCGAGAGGTGA AAGAGGCGCCAAGTGACAAAGGTGAGTCC A AA TGACG TTGTTAGAACTCGTAAG CCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATG TTAACGGG CTAGCCTTCTGCACCG TTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCATAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAAAAAA ]
[+] EMBL BI812844 [ GCTT G CCGT GGGGTGGAAGGCTATGACA AAGGAATCGTTACGCGCGGAGGAGATTCA GGAGAAGGCGAGGCTGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACTCTCTGGCGGCCATGCGAGAGGTGACAAGAGGCGCCAAGTGAC AAGGTGAGTCCAAGAACTGACGCTTGTTAGAACTCGTAAGTCCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATGCTTAACGGGACTA CCTTCTGCACCGCTTTGGTCCAACATAAACATACCAGGTCATACTATAGTATATTTCCGCCATAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATC ATGTTGTAGCTTAGACTAGAGGTAACAC ATATTTTCAAAAAA ]
[+] EMBL BI812852 [ aATGGATTCTGACGGTGGAAGAGAGCTCCGGGA CGGACT T T GCGGCCATGCGAGAGGTGA AAGAGGC CCCAGTGAC AAGGTGAGTCC A AA TGACT TTGTTAGAACTCGTAAG CCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATG TTAACGGG CTAGCCTTCTGCACCG TTTGGTCCCAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCATAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATC ATGTTGTAGCTTAGAATAGAGGTAACACAATATTTTCAAAAAA ]
consensusID : consensus_12428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1639 fasta sequence
[TGAGCGCCTGAGCCGTGAGGAGAGTCAACGCAAGCTGACAAGCTTTTCCCAATTCCATGAGCGCATCAGACTGCAGCCTCTCATCACAGTCGCGGAGTCCCATCCCCTGTTCCGAAATGAGTCCGAAGAAGCTGGCTGTCATCTACCCGCCGCCGGGGATGATCAGCCACTTGGTCTCCACGGTGGAGCTCGGAAAGCTGCTCGCGGCGCAAGGCCTCGACATCACCATCGTCCTCGGTGGTCATGACGAAAAGGAGGCCGCTGCTACTGCTACCACGTCTTTCCTGGCGGAAGCCGCGGCCGCCAACCCGGAGCTCTCCTTCCATCGCCTCCCTCAACCCACGCTCCAATGCGACGTGCCCGCCGATGATTACGTGTCTCGGATCTTCGAGTTCGCACGCTCTTCCGGCCCTGATCTACGTGACTTTCTCCGGTCCACCTCCCCGGCCGTCCTCATCATCGACTTCTTCTGCTACAGCGCCCTGAACATCGGCGCCGAGCTCGGCATTCCGACCTACTTCTTCCTCACCACTTGCATCGCCAGCGTCGCTTTCATGCTGTACCTTCCCGTCGTCCAGGGGGAGAATACCCTGAGCTTCAGAGATCTCGGTGGTGACCTCGTGCACGCGCCGGGGATCCCGCCGATACCAGCCGACCACCTCCCCAGGTCTCAGTTCGACCGCGACAGCATGAGCAGCAATCACTTCCTCGCCTTGTCCGAACAGGTGTGCAACGCGCACGGTGTTATGGTGAACAGCTGCCGGTCCCTCGAGCGGCGCGCCGCTGACGCCGTCGTCGCCGGCCTCTGCACATTCCCAGGGCGTCGAACGCCGCCGTTGCACTGCATAGGGCCACTGATAAAGCCGCGGGAGGACGACAGCGCAGAGCGCCATGAGTGCCTCGCCTGGCTGGACGCGCAGCCCAAGGACAGCGTGTTGTTCCTCTGTTTCGGCAGCATGGGCGTGTTCAGCGTGGAGCAGATCAAGCAGGTGGCCGTCGGCCTGGAGACGAGCGGCCACCGGTTCCTGTGGGTGGTGCGTCGCCCGCCTGGCTTCGAGCACGTTACCGGGCCCGACCTCGAAGCCCTCATCTTCCCGGAAGGCTTCCTTCGCCGGACCAAGGGAAGGGGGCTCGTGGTCATGTCGTGGGCACCGCAACGCGAGGTGCTGGAGCATGGTGCGGTGGGTGGGTTCGTGACACACTGTGGATGGAACTCGGTGTTAGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTATACGCGGAGCAGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGCTTGGCCGTGGCGGTGGAAGGGTATGACAAAGGGGTCGTTACAGCAGAGGAGATTCAGGAGAAGGCGAGGTGGATTATGGATTCGGACGGTGGAAGAGAGCTCCGAGAGCGGACTTTGGCAGCCATGCGGGAGGTGAAAGAGGCGTTAAGTGACAAAGGAGAGTTCAAAATAGCGTTGTTACAACTCACAAGTCAGTGGAAAAACTACAATAACTCATAAGTCAGCAGAAAAGCTTCTGAGAGAGAAGGATGGAGATATGAACAGTGGTGTTCATGGGCTAGCCTCCTCCACCATTTGATTTAAGGGAAAATTGTAACCATGCCATT]
[+] EMBL AK106947 [TGAGCGCCTGAGCCGTGAGGAGAGTCAACGCAAGCTGACAAGCTTTTCCCAATTCCATGAGCGCATCAGACTGCAGCCTCTCATCACAGTCGCGGAGTCCCATCCCCTGTTCCGAAATGAGTCCGAAGAAGCTGGCTGTCATCTACCCGCCGCCGGGGATGATCAGCCACTTGGTCTCCACGGTGGAGCTCGGAAAGCTGCTCGCGGCGCAAGGCCTCGACATCACCATCGTCCTCGGTGGTCATGACGAAAAGGAGGCCGCTGCTACTGCTACCACGTCTTTCCTGGCGGAAGCCGCGGCCGCCAACCCGGAGCTCTCCTTCCATCGCCTCCCTCAACCCACGCTCCAATGCGACGTGCCCGCCGATGATTACGTGTCTCGGATCTTCGAGTTCGCACGCTCTTCCGGCCCTGATCTACGTGACTTTCTCCGGTCCACCTCCCCGGCCGTCCTCATCATCGACTTCTTCTGCTACAGCGCCCTGAACATCGGCGCCGAGCTCGGCATTCCGACCTACTTCTTCCTCACCACTTGCATCGCCAGCGTCGCTTTCATGCTGTACCTTCCCGTCGTCCAGGGGGAGAATACCCTGAGCTTCAGAGATCTCGGTGGTGACCTCGTGCACGCGCCGGGGATCCCGCCGATACCAGCCGACCACCTCCCCAGGTCTCAGTTCGACCGCGACAGCATGAGCAGCAATCACTTCCTCGCCTTGTCCGAACAGGTGTGCAACGCGCACGGTGTTATGGTGAACAGCTGCCGGTCCCTCGAGCGGCGCGCCGCTGACGCCGTCGTCGCCGGCCTCTGCACATTCCCAGGGCGTCGAACGCCGCCGTTGCACTGCATAGGGCCACTGATAAAGCCGCGGGAGGACGACAGCGCAGAGCGCCATGAGTGCCTCGCCTGGCTGGACGCGCAGCCCAAGGACAGCGTGTTGTTCCTCTGTTTCGGCAGCATGGGCGTGTTCAGCGTGGAGCAGATCAAGCAGGTGGCCGTCGGCCTGGAGACGAGCGGCCACCGGTTCCTGTGGGTGGTGCGTCGCCCGCCTGGCTTCGAGCACGTTACCGGGCCCGACCTCGAAGCCCTCATCTTCCCGGAAGGCTTCCTTCGCCGGACCAAGGGAAGGGGGCTCGTGGTCATGTCGTGGGCACCGCAACGCGAGGTGCTGGAGCATGGTGCGGTGGGTGGGTTCGTGACACACTGTGGATGGAACTCGGTGTTAGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTATACGCGGAGCAGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGCTTGGCCGTGGCGGTGGAAGGGTATGACAAAGGGGTCGTTACAGCAGAGGAGATTCAGGAGAAGGCGAGGTGGATTATGGATTCGGACGGTGGAAGAGAGCTCCGAGAGCGGACTTTGGCAGCCATGCGGGAGGTGAAAGAGGCGTTAAGTGACAAAGGAGAGTTCAAAATAGCGTTGTTACAACTCACAAGTCAGTGGAAAAACTACAATAACTCATAAGTCAGCAGAAAAGCTTCTGAGAGAGAAGGATGGAGATATGAACAGTGGTGTTCATGGGCTAGCCTCCTCCACCATTTGATTTAAGGGAAAATTGTAACCATGCCATT]
consensusID : consensus_12428#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[GGCTTGGAGCACGTAACCGGGCCTGACCTCGACGCGCTCATCTTCCCGGAAGGCTTCCTACGCCGGACCAAGGGAAGGGGGCTCGTGGTCATATCGTGTTCACCGCAACGCGAGGTGCTGGAGCACGGTGCGGTGGGCGGGTTCGTGTCACACTGTGGATGGAACTCGGTGTTGGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTGTACGCGGAGCAGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGTTTGGCCGTGGGGGTGGAAGGCTATGACAAAGGAATCGTTACGGCGGAGGAGATTCAGGAGAAGGCGAGGTGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACTTTGGCGGCCATGCGAGAGGTGAAAGAGGCGCCAAGTGACAAAGGTGAGTCCAAAATGACGTTGTTAGAACTCGTAAGCCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATGTTAACGGGCTAGCCTTCTGCACCGTTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCAGAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTAAAAAAAAGGGA]
[-] EMBL CB672082 [GGCTTGGAGCACGTAACCGGGCCTGACCTCGACGCGCTCATCTTCCCGGAAGGCTTCCTACGCCGGACCAAGGGAAGGGGGCTCGTGGTCATATCGTGTTCACCGCAACGCGAGGTGCTGGAGCACGGTGCGGTGGGCGGGTTCGTGTCACACTGTGGATGGAACTCGGTGTTGGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTGTACGCGGAGCAGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGTTTGGCCGTGGGGGTGGAAGGCTATGACAAAGGAATCGTTACGGCGGAGGAGATTCAGGAGAAGGCGAGGTGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACTTTGGCGGCCATGCGAGAGGTGAAAGAGGCGCCAAGTGACAAAGGTGAGTCCAAAATGACGTTGTTAGAACTCGTAAGCCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATGTTAACGGGCTAGCCTTCTGCACCGTTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCAGAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTAAAAAAAAGGGA]
consensusID : consensus_12428#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence
[TTTTTTTTTTAGGCCTCTCCAAATAGATTTTATATAAAAAAAACACTAGGCTGAAATTAAGTGCGCTGAGCCGCTGAGTGATGGACTAGTGAGGAGACTGCAGCCTCTCATCGCAGTCGCGGAGTCCACGCTCTTATCCCGAAATGAGTCCGAAGAAGCTGGCTGTCATCTACCTGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAGCTGCTCGTGCCGACGGATCGATGTCACCATCGTCCTCGGGGCAGGACGACGGGGGCGCCGATTGCTACCGCGTCTTCTCCTAGCGGACGCCGCCGCACCAACCCAGAGCTCTCCTTCCACCGGCTCCCGCAACCCACGCTCCCTGAAGTGCCCGCT]
[-] EMBL BI812369 [TTTTTTTTTTAGGCCTCTCCAAATAGATTTTATATAAAAAAAACACTAGGCTGAAATTAAGTGCGCTGAGCCGCTGAGTGATGGACTAGTGAGGAGACTGCAGCCTCTCATCGCAGTCGCGGAGTCCACGCTCTTATCCCGAAATGAGTCCGAAGAAGCTGGCTGTCATCTACCTGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAGCTGCTCGTGCCGACGGATCGATGTCACCATCGTCCTCGGGGCAGGACGACGGGGGCGCCGATTGCTACCGCGTCTTCTCCTAGCGGACGCCGCCGCACCAACCCAGAGCTCTCCTTCCACCGGCTCCCGCAACCCACGCTCCCTGAAGTGCCCGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 TGAGCGCCTGAGCCGTGAGGAGAGTCAACGCAAGCTGACAAGCTTTTCCCAATTCCATGA 60
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 GCGCATCAGACTGCAGCCTCTCATCACAGTCGCGGAGTCCCATCCCCTGTTCCGAAATGA 120
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 GTCCGAAGAAGCTGGCTGTCATCTACCCGCCGCCGGGGATGATCAGCCACTTGGTCTCCA 180
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 CGGTGGAGCTCGGAAAGCTGCTCGCGGCGCAAGGCCTCGACATCACCATCGTCCTCGGTG 240
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 GTCATGACGAAAAGGAGGCCGCTGCTACTGCTACCACGTCTTTCCTGGCGGAAGCCGCGG 300
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 CCGCCAACCCGGAGCTCTCCTTCCATCGCCTCCCTCAACCCACGCTCCAATGCGACGTGC 360
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 CCGCCGATGATTACGTGTCTCGGATCTTCGAGTTCGCACGCTCTTCCGGCCCTGATCTAC 420
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 GTGACTTTCTCCGGTCCACCTCCCCGGCCGTCCTCATCATCGACTTCTTCTGCTACAGCG 480
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 CCCTGAACATCGGCGCCGAGCTCGGCATTCCGACCTACTTCTTCCTCACCACTTGCATCG 540
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 CCAGCGTCGCTTTCATGCTGTACCTTCCCGTCGTCCAGGGGGAGAATACCCTGAGCTTCA 600
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 GAGATCTCGGTGGTGACCTCGTGCACGCGCCGGGGATCCCGCCGATACCAGCCGACCACC 660
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 TCCCCAGGTCTCAGTTCGACCGCGACAGCATGAGCAGCAATCACTTCCTCGCCTTGTCCG 720
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 AACAGGTGTGCAACGCGCACGGTGTTATGGTGAACAGCTGCCGGTCCCTCGAGCGGCGCG 780
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 CCGCTGACGCCGTCGTCGCCGGCCTCTGCACATTCCCAGGGCGTCGAACGCCGCCGTTGC 840
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ------------------------------------------------------------
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ACTGCATAGGGCCACTGATAAAGCCGCGGGAGGACGACAGCGCAGAGCGCCATGAGTGCC 900
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 --------------------------------CGCGTGGGTTTTTTTTTAAATCGGATGT 28
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 TCGCCTGGCTGGACGCGCAGCCCAAGGACAGCGTGTTGTTCCTCTGTTTCGGCAGCATGG 960
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 AGATCGGATAAGTAATTTGAGAGAAAACTTGTTTGAAGAGGAAAGGACGTACATGTATAT 88
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 GCGTGTTCAGCGTGGAGCAGATCAAGCAGGTGGCCGTCGGCCTGGAGACGAGCGGCCACC 1020
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ATTAAAAAGCATGCATGTAGTACCATGTACTAGCTAGATTTCTCCATGTTTAGACGTCGC 148
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 GGTTCCTGTGGGTGGTGCGTCGCCCGCCTGGCTTCGAGCACGTTACCGGGCCCGACCTCG 1080
consensus_12428#2 -----------------------------GGCTTGGAGCACGTAACCGGGCCTGACCTCG 31
consensus_12428#0 TAGATAAGGCAAAATTGAGAGGCCTCTCCAAATAGATTTTATATAAAAAAAACACTAGGC 208
consensus_12428#3 ---------TTTTTTTTTTAGGCCTCTCCAAATAGATTTTATATAAAAAAAACACTAGGC 51
consensus_12428#1 AAGCCCTCATCTTCCCGGAAGGCTTCCTTCGCCGGACC--AAGGGAAGGGGGCTCGTGGT 1138
consensus_12428#2 ACGCGCTCATCTTCCCGGAAGGCTTCCTACGCCGGACC--AAGGGAAGGGGGCTCGTGGT 89
**** ** ** * ** * * **
consensus_12428#0 TGAAATTAAGTGCGCTGAGCCGCTGAGTGATGGACTAGTGAGGAGACTGCAGCCTCTCAT 268
consensus_12428#3 TGAAATTAAGTGCGCTGAGCCGCTGAGTGATGGACTAGTGAGGAGACTGCAGCCTCTCAT 111
consensus_12428#1 C-ATGTCGTGGGCACCGCAACGCGAGGTGCTGGAGCATGGTGCGGTGGGTGGGTTCGTGA 1197
consensus_12428#2 C-ATATCGTGTTCACCGCAACGCGAGGTGCTGGAGCACGGTGCGGTGGGCGGGTTCGTGT 148
* * * * * * *** *** **** * * * * * * **
consensus_12428#0 CGCAGTC---GCGGAGTCCACGCTCTTATCC---CGAAATGAGTCCGAAGAAGCTGGC-T 321
consensus_12428#3 CGCAGTC---GCGGAGTCCACGCTCTTATCC---CGAAATGAGTCCGAAGAAGCTGGC-T 164
consensus_12428#1 CACACTGTGGATGGAACTCGGTGTTAGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCAT 1257
consensus_12428#2 CACACTGTGGATGGAACTCGGTGTTGGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCAT 208
* ** * *** * * * * * * * * * * ****** *
consensus_12428#0 GTCATCTACCTGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAG 381
consensus_12428#3 GTCATCTACCTGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAG 224
consensus_12428#1 GGCCGTTATACGC-GGAGCAGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGCTTG 1316
consensus_12428#2 GGCCGTTGTACGC-GGAGCAGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGTTTG 267
* * * ** * * ** *** * * ** *** ** *** * * *
consensus_12428#0 CTGCTCGTGCCGCACGGCATCGATGTCACCATCGTCCTCGGCGGCCAGGACGACGGGGGC 441
consensus_12428#3 CTGCTCGTGCCG-ACGG-ATCGATGTCACCATCGTCCTCG--GGGCAGGACGACGGGGGC 280
consensus_12428#1 GCCGTGGCGGTGGAAGGGTATGACAAAGGGGTCGTTACAGCAGAGGAGATTCAGGAGAAG 1376
consensus_12428#2 GCCGTGGGGGTGGAAGGCTATGACAAAGGAATCGTTACGGCGGAGGAGATTCAGGAGAAG 327
* * * * * ** ** **** * * ** * * *
consensus_12428#0 GCCG-CTG--CTACCG-GTCTT-TCCTAGCGGACGCCGCCGCCACCAACCCAGAGCTCTC 496
consensus_12428#3 GCCGATTG--CTACCGCGTCTTCTCCTAGCGGACGCCGCCGC-ACCAACCCAGAGCTCTC 337
consensus_12428#1 GCGAGGTGGATTATGGATTCGGACGGTGGAAGAGAGCTCCGAGAGCGGACTTTGGCAGCC 1436
consensus_12428#2 GCGAGGTGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACTTTGGCGGCC 387
** ** * * ** * * ** * *** * * * ** *
consensus_12428#0 CTTCCACCGCCTCCCGCAAC-CCACGCTCCCCTGCAACGTGCCCGCTGATGATTACGTGT 555
consensus_12428#3 CTTCCACCGGCTCCCGCAAC-CCACGCTCCC---TGAAGTGCCCGCT------------- 380
consensus_12428#1 ATGCGGGAGGTGAAAGAGGCGTTAAGTGACAAAGGAGAGTTCAAAATAGCGTTGTTACAA 1496
consensus_12428#2 ATGCGAGAGGTGAAAGAGGCGCCAAGTGACAAAGGTGAGTCCAAAATGACGTTGTTAGAA 447
* * * * * * * * ** * *
consensus_12428#0 CTCGCTCGGGTCTTCGAGTTTGCACGGGCTTCCGGCCCCGATCTATGTGACTTCCTCCGG 615
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 CTCACAAGTCAGTGGAAAAACTAC-AATAACTCATAAGTCAGCAGAAAAGCTTCTGAGAG 1555
consensus_12428#2 CTCGTAAGCCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATGTT 507
consensus_12428#0 TCCACCTCCCCGGCCGTCCTCATCATCGACTTCTTCTGCTACAGCGCCCTCGACGTTGGC 675
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 AGAAGGATGGAGATATGAACAGTGGTGTTCA---TGGGCTAGCC---TCCTCCACCATTT 1609
consensus_12428#2 AACGGGCTAGCCTTCTGCACCGTTTGGTCCAAAATAAACATACCAGGTCATACTATAGTA 567
consensus_12428#0 GCCGAGCTCCGCATCCCGACGTACTTCTTCCTCACCACTTGCATCGCTAGCCTCGCTTTT 735
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 GATTTAAGGGAAAATTGTAACCATGCCATT------------------------------ 1639
consensus_12428#2 TATTTCCGCCAGAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGC 627
consensus_12428#0 CTGCTGTACCTTCCAGTCATCCAAGAGGAGAATACCATGAGCTTCAGAGATCTCAGTGGT 795
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 TGGATCATTTATTTTAAAAAAAAGGGA--------------------------------- 654
consensus_12428#0 GACCTCGTGCACGCGCCGGGTATCCCACCGATACCGGCAGATCACCTCCCCATGTCTCAG 855
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 TTAGACCGCGACAGCGTGAGCAGCAGGCACTTCCTCGCCTTGTCCGAACAGGTGTGCAAC 915
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 TCGCACGGTGTTATGGTAAATAGCTGCCACTCCCTCGAGCGGCGCGCGGCCGACGCCATC 975
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 GTCGCCGGTCTCTGCACGTTCCCAGGGCGTCGAACGCCGCCGCTGCACTGCATAGGGCCA 1035
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 CTGATAAAGCCGCGGGAGGAGGACAGTACAGAGCGCCACGAGTGCCTCGCCTGGCTTGAC 1095
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 GCGCAGCCCAAGGCCAGCGTGTTGTTCCTCTGTTTCGGCAGCTTGGGCGTGTTCAGCGTG 1155
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 GAGCAGATCAAGCAGGTGGCCGTCGGCCTAGAGACGAGCGGCCACCGGTTCCTGTGGGTG 1215
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 GTGCGTCCCCCGCCTGGCTTGGAGCACGTAACCGGGCCTGACCTCGACGCGCTCATCTTC 1275
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 CCGGAAGGCTTCCTACGCCGGACCAAGGGAAGGGGGCTCGAGGTCATATCGTGTTCACCG 1335
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 CAACGCGAGGTGCTGGAGCACGGTGCGGTGGGCGGGTTCGTGACACACTGTGGATGGAAC 1395
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 TCGGTGTTGGAGCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTGTACGCGGAGC 1455
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 AGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGCTTGGCCGTGGGGGTGGAAGGCT 1515
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 ATGACAAAGGAATCGTTACGGCGGAGGAGATTCAGGAGAAGGCGAGGTGGCTCATGGATT 1575
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 CTGACGGTGGAAGAGAGCTCCGGGAGCGGACTTTGGCGGCCATGCGAGAGGTGAAAGAGG 1635
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 CGCCAAGTGACAAAGGTGAGTCCAAAATGACGTTGTTAGAACTCGTAAGCCAGTGGAAAA 1695
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 GTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATGTTAACGGGCTAGCCTTCTGCA 1755
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 CCGTTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCATAGTAGTA 1815
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 AAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATC 1875
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 AATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAAAAAATAACCGGGTAAGCTTG 1935
consensus_12428#3 ------------------------------------------------------------
consensus_12428#1 ------------------------------------------------------------
consensus_12428#2 ------------------------------------------------------------
consensus_12428#0 CAAAAGGTTTCTGCTTAC 1953
consensus_12428#3 ------------------
consensus_12428#1 ------------------
consensus_12428#2 ------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||