These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 796 fasta sequence [TCTTTTAAGTAACCAAATTAGCAAACTAAATCAGTACTCCCCCCCATGCAAACACATCACCTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG-A-TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTCGTCATCCTCCTCGTCG] [+] EMBL CB682631 [TCTTTTAAGTAACCAAATTAGCAAACTAAATCAGTACTCCCCCTCATGCAAACACATCACCTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTCGT ] [+] EMBL CB682665 [cCTTTT TTTTACCAAATTAGCAAACTAAATCAGTACTCCCCCCCATGCAAACACATCACCTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTC ] [+] EMBL CB620719 [ AACTAAATCAGTACTCCTCACCATGCAAACACATCACCTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAAGCCGCTGAACCCGCCGCCGCCGCCGGCGCTGTCCCAGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTCGTCATCCTCCT ] [-] EMBL AU173499 [ TTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAANAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGG ] [+] EMBL CB666902 [ GTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGAGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAAGCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTCGTCATCCTCCTCGTCG] [+] EMBL CB965105 [ TAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCAC ] [+] EMBL BU673035 [ AGCACATATACTAACGTA TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCAC ] [-] EMBL C28743 [ CG ATTAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTNACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTT ] consensusID : consensus_12432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 596 fasta sequence [GCCTCCTCCCCAAGATTATTGCCCCCCAGATCTAGATCTGAATCGACGCCGCAGCCGTGACTGAGAGGATGGCGCAGGAGGCGGCGTCTGCGAAACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCAAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGC] [+] EMBL CB682664 [GCCTCCTCCCCAAGATTATTGCCCCCCAGATCTAGATCTGAATCGACGCCGCAGCCGTGACTGAGAGGATGGCGCAGGAGGCGGCGTCTGCGAAACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCAAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGC] [+] EMBL CB682630 [GCCTCCTCCCCAAAACTATTGCCCCCCAGATCTAGATCTGAATCGACGCCGCAGCCGTGACTGAGAGGATGGCGCAGGAGGCGGCGTCGGTGAAGATCCCGCTCGCTCGCCATCACACCACCAAATTAGGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAACTGCTGGTTTGTTACGAACCGTCTCCGCCGGGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCAAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCAAGGGGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12432#0 TCTTTTAAGTAACCAAATTAGCAAACTAAATCAGTACTCCCCCCCATGCAAACACATCAC 60 consensus_12432#1 ------------------------------------------------------------ consensus_12432#0 CTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTA 120 consensus_12432#1 --------------------------GCCTCCTCCCCAAGATTATTGCCCCC-CAGATCT 33 * * * **** ** ** consensus_12432#0 GCACATATACTAACGATAAGTACAGCC-TGATAAATACATCCTGCTACTGAATGCATCCT 179 consensus_12432#1 AGATCTGAATCGACGCCG----CAGCCGTGACTGAGAGGA--TGGCGCAGGAGGCGGCGT 87 * * * *** ***** *** * * ** * * * ** * * consensus_12432#0 GAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCT 239 consensus_12432#1 -------CTGCGAAACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCT 140 ** ** ********************************************** consensus_12432#0 GCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGC 299 consensus_12432#1 GCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGC 200 ************************************************************ consensus_12432#0 CGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGT 359 consensus_12432#1 CGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCAAGAGCCTCGTGGAGGT 260 ******************************************* **************** consensus_12432#0 GGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGAT 419 consensus_12432#1 GGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGAT 320 ************************************************************ consensus_12432#0 CGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAAT 479 consensus_12432#1 CGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAAT 380 ************************************************************ consensus_12432#0 CCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAG 539 consensus_12432#1 CCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAG 440 ************************************************************ consensus_12432#0 GTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGG 599 consensus_12432#1 GTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGG 500 ************************************************************ consensus_12432#0 GGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCG 659 consensus_12432#1 GGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCG 560 ************************************************************ consensus_12432#0 GCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGA 719 consensus_12432#1 GCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGC------------------------ 596 ************************************ consensus_12432#0 TGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTT 779 consensus_12432#1 ------------------------------------------------------------ consensus_12432#0 CGTCATCCTCCTCGTCG 796 consensus_12432#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||