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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 796 fasta sequence
[TCTTTTAAGTAACCAAATTAGCAAACTAAATCAGTACTCCCCCCCATGCAAACACATCACCTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG-A-TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTCGTCATCCTCCTCGTCG]
[+] EMBL CB682631 [TCTTTTAAGTAACCAAATTAGCAAACTAAATCAGTACTCCCCCTCATGCAAACACATCACCTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTCGT ]
[+] EMBL CB682665 [cCTTTT TTTTACCAAATTAGCAAACTAAATCAGTACTCCCCCCCATGCAAACACATCACCTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTC ]
[+] EMBL CB620719 [ AACTAAATCAGTACTCCTCACCATGCAAACACATCACCTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAAGCCGCTGAACCCGCCGCCGCCGCCGGCGCTGTCCCAGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTCGTCATCCTCCT ]
[-] EMBL AU173499 [ TTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAANAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGG ]
[+] EMBL CB666902 [ GTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGAGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAAGCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTCGTCATCCTCCTCGTCG]
[+] EMBL CB965105 [ TAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCAC ]
[+] EMBL BU673035 [ AGCACATATACTAACGTA TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCAC ]
[-] EMBL C28743 [ CG ATTAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTNACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTT ]
consensusID : consensus_12432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 596 fasta sequence
[GCCTCCTCCCCAAGATTATTGCCCCCCAGATCTAGATCTGAATCGACGCCGCAGCCGTGACTGAGAGGATGGCGCAGGAGGCGGCGTCTGCGAAACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCAAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGC]
[+] EMBL CB682664 [GCCTCCTCCCCAAGATTATTGCCCCCCAGATCTAGATCTGAATCGACGCCGCAGCCGTGACTGAGAGGATGGCGCAGGAGGCGGCGTCTGCGAAACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCAAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGC]
[+] EMBL CB682630 [GCCTCCTCCCCAAAACTATTGCCCCCCAGATCTAGATCTGAATCGACGCCGCAGCCGTGACTGAGAGGATGGCGCAGGAGGCGGCGTCGGTGAAGATCCCGCTCGCTCGCCATCACACCACCAAATTAGGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAACTGCTGGTTTGTTACGAACCGTCTCCGCCGGGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCAAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCAAGGGGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12432#0 TCTTTTAAGTAACCAAATTAGCAAACTAAATCAGTACTCCCCCCCATGCAAACACATCAC 60
consensus_12432#1 ------------------------------------------------------------
consensus_12432#0 CTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTA 120
consensus_12432#1 --------------------------GCCTCCTCCCCAAGATTATTGCCCCC-CAGATCT 33
* * * **** ** **
consensus_12432#0 GCACATATACTAACGATAAGTACAGCC-TGATAAATACATCCTGCTACTGAATGCATCCT 179
consensus_12432#1 AGATCTGAATCGACGCCG----CAGCCGTGACTGAGAGGA--TGGCGCAGGAGGCGGCGT 87
* * * *** ***** *** * * ** * * * ** * *
consensus_12432#0 GAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCT 239
consensus_12432#1 -------CTGCGAAACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCT 140
** ** **********************************************
consensus_12432#0 GCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGC 299
consensus_12432#1 GCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGC 200
************************************************************
consensus_12432#0 CGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGT 359
consensus_12432#1 CGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCAAGAGCCTCGTGGAGGT 260
******************************************* ****************
consensus_12432#0 GGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGAT 419
consensus_12432#1 GGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGAT 320
************************************************************
consensus_12432#0 CGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAAT 479
consensus_12432#1 CGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAAT 380
************************************************************
consensus_12432#0 CCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAG 539
consensus_12432#1 CCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAG 440
************************************************************
consensus_12432#0 GTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGG 599
consensus_12432#1 GTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGG 500
************************************************************
consensus_12432#0 GGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCG 659
consensus_12432#1 GGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCG 560
************************************************************
consensus_12432#0 GCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGA 719
consensus_12432#1 GCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGC------------------------ 596
************************************
consensus_12432#0 TGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTT 779
consensus_12432#1 ------------------------------------------------------------
consensus_12432#0 CGTCATCCTCCTCGTCG 796
consensus_12432#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||