|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1517 fasta sequence
[TCCATTTCCGCGTCTCTCCGCGACCAGGCTCTGCCCCCCCAGCGCGACGAACTGCCCGGTGGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGCCGGCGGCACCCCTCCCCCCGCCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTATTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCAACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCA-GACG-TTTCAAAGGTTTTGTCAGTAACTCTGGATGA-TTGGTCTGATAGTGATATAGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGATCACCCAAAACCCAAGATGGATTCAACTATGGAATATAGGACTAAATTTATAAGAGCCAAGTATGAGAC-ACAAGATTTTTTG-AAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGATGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGTCGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCAGTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCATGATA-CGTTCTCTGCTGATGATATCAT-GGGGGAAGC-GGAGATAGATCTTCAACCAATGATCACA-G-CCGTCAT-GGCCTTT-GGAGA-TCCCTCGC-GTGTT-GGTGACATGCAAATT-GGAAGG-TGGTTCATGACCAAAGACAAT-GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACA-GGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCAAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCA-CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACCAATTATATTATTCTTTAGTGAAGTGTGCT-TTCAACCCGTTGTCATAAAAAAAAAAAATTCATTGTGGTGATATNAAGTNCTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK066163 [TCCATTTCCGCGTCTCTCCGCGACCAGGCTCTGCCCCCCCAGCGCGACGAACTGCCCGGTGGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGCCGGCGGCACCCCTCCCCCCGCCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTATTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCAACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCA GACG TTTCAAAGGTTTTGTCAGTAACTCTGGATGA TTGGTCTGATAGTGATATAGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGATCACCCAAAACCCAAGATGGATTCAACTATGGAATATAGGACTAAATTTATAAGAGCCAAGTATGAGAC ACAAGATTTTTTG AAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGATGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGTCGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCAGTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCATGATA CGTTCTCTGCTGATGATATCAT GGGGGAAGC GGAGATAGATCTTCAACCAATGATCACA G CCGTCAT GGCCTTT GGAGA TCCCTCGC GTGTT GGTGACATGCAAATT GGAAGG TGGTTCATGACCAAAGACAAT GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACA GGAAGTGCACCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCAAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCA CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACCAATTATATTA ]
[+] EMBL AU197643 [ GGCTCTGCCCCCCCAGCGCGACGAACTGCCCGGTGGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGCCGGCGGCACCCCTCCCCCCGCCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTATTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCAACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATTTCTTTGNTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCAGGACGNTTTCAAAGGTTTTGNCAGTAANTCTGGATGATTTGGTCTGATAGTGATAT ]
[+] EMBL CA753709 [ TCTGCCCCCCCAGCACGACGAACTGCCCGGTGGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGCCGGCGGCACCCCTCCCCCCACCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTATTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCAACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATCTCTTTGCTTAAAGTGTGGAGATGTACCTAGAGCACTTGGACCA GACG TTTCAAAGGTTTTGTCAGTAACTCTGGATGA TTGGTCTGATAGTGATATAGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTTCCAAAGATCCCCCCAAACCCCAGATGGATTCCACTATGGAATATANGACTAAATTTATAAGAGCAAAGTATTAGACAACAGAATTTTTTGAAAGCCAg ]
[+] EMBL CA767596 [ TTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCA GACG TTTCAAAGGTTTTGTCAGTAACTCTGGATGA TTGGTCTGATAGTGATATGGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGATCACCCAAAACCCAAGATGGATTCAACTATGGAATATAGGACTAAATTTATAAGAGCCAAGTATGAGAC ACAAGATTTTTTG AAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGATGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGTCGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCAGTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGNTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGGTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCATGATACCGTTCTCTGCTGATGATATCATGGGGGGAAGCNGGAGATAGATCTTNAACCAATGATCACAGG CCGTCATGGGCCTTTGGGAGATTCCCTCGCGGGGTTGGGGGACATGCAAATTGGGAAGGNGGGTTCATGANCAAANACAATGGCCCT ]
[+] EMBL CA999582 [ ATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCA CACG TTTCGAAGGTTTTGTCAGTAACTCTGGATGA TTGGTCTGATAGTGATATAGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGATCACCCCAA ]
[+] EMBL CA999920 [ AGCCAAGTATGAGAC ACAAGATTTTTTG AAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGATGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGTCGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCAGTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTTAACTTGAAGTATACGACCATGATA CGTTCTCTGCTGATGATATCAT GGGGGGAGC GGAGATAGATCTTCAACCAATGATCA ]
[-] EMBL CA762974 [ GTAAGAGGTATTCAGTTGGCCGTNAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCCTGATA CGTTCTCTGCTGATGATATCAT GGGGGAAGC GGAGATAGATCTTCAACCAATGATCACA G CCGTCAT GGCCTTT GGAGA TCCCTCGC GTGTT GGTGACATGCAAATT GGAAGG TGGTTCATGACCAAAGACAAT GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAGAACA GGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCC AAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCA CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACCAATTATATTATTCTTTAGTGAAGTGTGCT TTCAACCCGTTGTCAAAAAAAAAA ]
[+] EMBL BM421477 [ CGTTCTCTGCTGATGATATCAT GGGGGAACC GGAGATAGATCTTCAACCAATGATCACA GCCCGTCAT GCCTTT GGAGA TCCCTCGC GTGTT GGTGACATGCAAATT GGAAGG TGGTTCATGACCCAAGAC AT GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACACGGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCNAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCACCCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACC ATTATATTATTCTTTAGTGAAGTGTGCTCTTCAACCCGTTGTCATAAAAAAAAAA ]
[+] EMBL BM421274 [ TCAT GGGGGAA C GGAGATAGATCTTCAACC ATGATCACA G CCGTCAT GGCCTTT GGAGA TCCCTCGC GTGTT GGTGACATGCAAATT GGAAGG TGGTTCATGACC AAGAC AT GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACACGGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCC ATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCCAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTC AATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCA CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACC ATTATATTATTCTTTAGTGAAGTGTGCT TTCAACCCGTTGTCATAAAAAAAAAA ]
[+] EMBL AU055973 [ AGAAGCGTCAGTTTTGTAATTTAAANGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCN CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGNACTCACGACCAATTATATTATTCTTTAGTGAAGTGTGCT TTCAACCCGTTGTCATAAAAATGGCTAATTCATTGTGGTGATATNAAGTNCTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||